Wall clock time and date at job start Tue Mar 31 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 N 1.46490 * 109.47052 * 120.00189 * 2 1 3 5 5 C 1.34779 * 120.00679 * 274.99885 * 4 2 1 6 6 O 1.21590 * 119.99145 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00592 * 180.02562 * 5 4 2 8 8 C 1.40022 * 120.00052 * 174.74357 * 7 5 4 9 9 C 1.38911 * 120.00399 * 326.15264 * 8 7 5 10 10 C 1.38006 * 119.99694 * 179.78818 * 9 8 7 11 11 C 1.38897 * 120.00770 * 0.46142 * 10 9 8 12 12 O 1.35778 * 120.00394 * 179.76890 * 11 10 9 13 13 C 1.34816 * 116.99869 * 185.94091 * 12 11 10 14 14 H 1.07999 * 120.00151 * 5.40944 * 13 12 11 15 15 C 1.38627 * 119.99841 * 185.41354 * 13 12 11 16 16 N 1.31582 * 120.00159 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00142 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46988 * 59.99939 * 17 15 13 19 19 H 1.48504 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47097 * 299.99876 * 17 15 13 21 21 C 1.38907 * 119.99848 * 359.78563 * 11 10 9 22 22 C 1.38009 * 119.99943 * 359.97438 * 21 11 10 23 23 C 1.50703 * 109.46899 * 240.00662 * 2 1 3 24 24 C 1.33987 * 124.92747 * 100.00366 * 23 2 1 25 25 C 1.46785 * 106.18803 * 179.73007 * 24 23 2 26 26 C 1.39405 * 134.36884 * 179.97438 * 25 24 23 27 27 C 1.36735 * 119.71283 * 179.97438 * 26 25 24 28 28 C 1.38745 * 120.41936 * 359.97438 * 27 26 25 29 29 C 1.37847 * 120.68294 * 0.02889 * 28 27 26 30 30 C 1.38940 * 119.81989 * 359.97438 * 29 28 27 31 31 O 1.34453 * 124.91659 * 279.69276 * 23 2 1 32 32 H 1.08995 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47038 * 300.00263 * 1 2 3 34 34 H 1.09007 * 109.46971 * 59.99214 * 1 2 3 35 35 H 0.97000 * 120.00038 * 95.00338 * 4 2 1 36 36 H 0.96995 * 119.99708 * 354.74415 * 7 5 4 37 37 H 1.08001 * 119.99760 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.99888 * 180.22381 * 10 9 8 39 39 H 0.96993 * 120.00033 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.00194 * 179.97438 * 21 11 10 41 41 H 1.08004 * 119.99851 * 179.97438 * 22 21 11 42 42 H 1.08007 * 126.90720 * 359.72831 * 24 23 2 43 43 H 1.07999 * 120.14240 * 359.97438 * 26 25 24 44 44 H 1.08004 * 119.78999 * 180.02562 * 27 26 25 45 45 H 1.08004 * 119.65726 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.08720 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8575 1.1612 2.4119 7 7 2.5968 -0.6537 3.4574 8 6 2.8353 0.0673 4.6338 9 6 3.2985 1.3751 4.5652 10 6 3.5293 2.0871 5.7246 11 6 3.3077 1.4929 6.9604 12 8 3.5393 2.1919 8.1012 13 6 3.4232 1.5206 9.2645 14 1 3.2430 0.4558 9.2579 15 6 3.5352 2.1972 10.4693 16 7 3.7552 3.4944 10.4774 17 14 3.3736 1.2672 12.0813 18 1 4.4260 0.2222 12.1575 19 1 3.5306 2.2123 13.2160 20 1 2.0352 0.6278 12.1520 21 6 2.8494 0.1835 7.0292 22 6 2.6138 -0.5270 5.8697 23 6 2.0323 -0.7103 -1.2306 24 6 2.4679 -0.1031 -2.3427 25 6 2.8601 -1.1740 -3.2668 26 6 3.3802 -1.2039 -4.5598 27 6 3.6441 -2.4055 -5.1566 28 6 3.3979 -3.5934 -4.4832 29 6 2.8838 -3.5834 -3.2042 30 6 2.6085 -2.3732 -2.5797 31 8 2.1138 -2.0452 -1.3693 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5140 -0.8900 35 1 2.2490 -1.6318 1.1525 36 1 2.7552 -1.6103 3.4343 37 1 3.4743 1.8360 3.6044 38 1 3.8861 3.1051 5.6712 39 1 3.8332 3.9678 11.3204 40 1 2.6774 -0.2787 7.9900 41 1 2.2578 -1.5453 5.9232 42 1 2.5199 0.9605 -2.5230 43 1 3.5739 -0.2820 -5.0879 44 1 4.0474 -2.4301 -6.1582 45 1 3.6112 -4.5356 -4.9661 46 1 2.6954 -4.5138 -2.6891 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043572472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:55 Heat of formation + Delta-G solvation = 9.816155 kcal Electronic energy + Delta-G solvation = -30435.749757 eV Core-core repulsion = 26065.092130 eV Total energy + Delta-G solvation = -4370.657627 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.93181 -40.40748 -38.84644 -38.34628 -36.90051 -35.60258 -34.02153 -33.21154 -32.18510 -31.14301 -30.84718 -30.18897 -28.93952 -27.64067 -25.35195 -24.56834 -23.26111 -22.49089 -22.13501 -21.63386 -21.04164 -20.49152 -18.74366 -17.84810 -17.76064 -17.75208 -17.07020 -16.62131 -16.38556 -15.83346 -15.51179 -15.03879 -14.71109 -14.54144 -14.43027 -14.28069 -13.92953 -13.80344 -13.59965 -13.48169 -13.46728 -13.08517 -12.78400 -12.69452 -12.47704 -12.44475 -12.22458 -11.85525 -11.76438 -11.55344 -11.51438 -11.39152 -11.02991 -10.68661 -10.55582 -10.45802 -10.05569 -9.66217 -9.37442 -9.24189 -9.06180 -8.68266 -8.59484 -8.17657 -6.88381 -6.41681 -3.99844 0.44359 0.92541 1.84015 2.16825 2.18965 2.25052 2.64646 3.13995 3.14999 3.18723 3.28146 3.29205 3.83390 3.99040 4.18361 4.21642 4.50786 4.60559 4.62427 4.65996 4.79296 4.82957 4.88700 5.01493 5.13216 5.22149 5.33156 5.35630 5.40994 5.51050 5.58118 5.72417 5.79553 5.81201 5.90286 5.96756 6.00098 6.10239 6.15035 6.21959 6.26305 6.29384 6.67226 6.75006 6.84021 6.93107 7.13641 7.23018 7.26648 7.45353 7.81780 7.99055 8.02662 8.61172 9.03547 9.74557 10.76287 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.001444 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.155081 B =19391.183204 C =19648.545030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.244 3.756 3 H 0.122 0.878 4 N -0.746 5.746 5 C 0.703 3.297 6 O -0.572 6.572 7 N -0.673 5.673 8 C 0.055 3.945 9 C -0.067 4.067 10 C -0.176 4.176 11 C 0.145 3.855 12 O -0.177 6.177 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.218 4.218 22 C -0.092 4.092 23 C 0.030 3.970 24 C -0.191 4.191 25 C -0.129 4.129 26 C -0.070 4.070 27 C -0.137 4.137 28 C -0.094 4.094 29 C -0.107 4.107 30 C 0.054 3.946 31 O -0.190 6.190 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.398 0.602 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.270 0.730 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -14.475 -29.530 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.139 3.861 3 H 0.140 0.860 4 N -0.403 5.403 5 C 0.404 3.596 6 O -0.449 6.449 7 N -0.320 5.320 8 C -0.037 4.037 9 C -0.087 4.087 10 C -0.196 4.196 11 C 0.091 3.909 12 O -0.081 6.081 13 C -0.468 4.468 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.238 4.238 22 C -0.113 4.113 23 C -0.018 4.018 24 C -0.211 4.211 25 C -0.130 4.130 26 C -0.088 4.088 27 C -0.155 4.155 28 C -0.113 4.113 29 C -0.125 4.125 30 C 0.006 3.994 31 O -0.091 6.091 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.232 0.768 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.180 0.820 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.153 0.847 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.871 -13.133 -29.066 32.025 hybrid contribution 0.036 -1.454 0.631 1.585 sum -2.835 -14.587 -28.435 32.084 Atomic orbital electron populations 1.22274 0.93270 1.03077 1.03742 1.19396 0.94557 0.95388 0.76779 0.86024 1.45112 1.72655 1.14024 1.08494 1.15866 0.78331 0.85283 0.80156 1.90957 1.55862 1.14055 1.83999 1.42302 1.68914 1.11005 1.09743 1.17013 1.09304 0.93791 0.83629 1.20613 0.97232 0.93021 0.97851 1.20116 1.09114 1.00855 0.89544 1.19414 0.92769 0.90669 0.88013 1.84005 1.75994 1.36775 1.11304 1.21249 1.51556 0.92965 0.81003 0.89194 1.25277 0.96633 0.95855 0.98757 1.70039 1.44890 1.07278 1.27521 0.85796 0.79115 0.78714 0.79873 1.19544 1.20312 1.19552 1.20960 1.08924 0.95645 0.98242 1.20439 1.00853 0.99201 0.90774 1.22454 1.01299 0.80276 0.97752 1.22259 1.06058 0.99789 0.92998 1.19938 1.04294 0.92602 0.96157 1.20323 0.97261 0.98697 0.92535 1.20808 1.02018 0.92037 1.00614 1.20957 0.98151 0.98843 0.93300 1.19972 1.02940 0.94399 0.95186 1.19636 0.99887 0.95678 0.84161 1.83909 1.69013 1.23610 1.32606 0.91937 0.90225 0.90994 0.76611 0.76777 0.85706 0.86138 0.92002 0.85126 0.87215 0.82021 0.85396 0.85278 0.84725 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.47 37.16 0.35 -1.09 16 2 C 0.24 2.31 3.01 -69.09 -0.21 2.10 16 3 H 0.12 1.22 7.55 -51.93 -0.39 0.83 16 4 N -0.75 -7.69 5.07 -59.82 -0.30 -8.00 16 5 C 0.70 9.98 8.26 -86.92 -0.72 9.27 16 6 O -0.57 -10.31 13.72 5.29 0.07 -10.24 16 7 N -0.67 -9.28 5.35 -14.18 -0.08 -9.36 16 8 C 0.06 0.99 6.27 -83.62 -0.52 0.47 16 9 C -0.07 -1.33 8.65 -39.42 -0.34 -1.67 16 10 C -0.18 -3.91 9.98 -39.42 -0.39 -4.30 16 11 C 0.15 3.55 6.65 -39.09 -0.26 3.29 16 12 O -0.18 -5.10 9.76 0.00 0.00 -5.10 16 13 C -0.39 -10.94 9.44 30.88 0.29 -10.65 16 14 H 0.09 2.30 5.29 -52.49 -0.28 2.02 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 17 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C -0.22 -4.70 9.13 -39.42 -0.36 -5.06 16 22 C -0.09 -1.66 9.96 -39.41 -0.39 -2.06 16 23 C 0.03 0.28 6.05 -35.80 -0.22 0.06 16 24 C -0.19 -1.66 10.99 -37.62 -0.41 -2.08 16 25 C -0.13 -1.18 6.40 -105.16 -0.67 -1.85 16 26 C -0.07 -0.51 10.05 -39.69 -0.40 -0.91 16 27 C -0.14 -0.82 9.98 -39.94 -0.40 -1.22 16 28 C -0.09 -0.55 10.01 -39.54 -0.40 -0.95 16 29 C -0.11 -0.78 10.07 -39.46 -0.40 -1.18 16 30 C 0.05 0.51 7.42 -38.48 -0.29 0.22 16 31 O -0.19 -1.86 10.18 3.90 0.04 -1.82 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.40 3.32 8.29 -40.82 -0.34 2.98 16 36 H 0.40 4.04 8.83 -40.82 -0.36 3.68 16 37 H 0.13 2.42 6.45 -52.49 -0.34 2.08 16 38 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 45 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -34.47 397.16 -9.75 -44.22 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.37 Total: 10.12 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -5.83 Total: -16.62 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.38 Total: -42.02 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.11 Total: -17.16 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.47 -9.75 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.036 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds