Wall clock time and date at job start Tue Mar 31 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 N 1.46490 * 109.47052 * 120.00189 * 2 1 3 5 5 C 1.34779 * 120.00679 * 274.99885 * 4 2 1 6 6 O 1.21590 * 119.99145 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00592 * 180.02562 * 5 4 2 8 8 C 1.40022 * 120.00052 * 174.74357 * 7 5 4 9 9 C 1.38911 * 120.00399 * 326.15264 * 8 7 5 10 10 C 1.38006 * 119.99694 * 179.78818 * 9 8 7 11 11 C 1.38897 * 120.00770 * 0.46142 * 10 9 8 12 12 O 1.35778 * 120.00394 * 179.76890 * 11 10 9 13 13 C 1.34816 * 116.99869 * 185.94091 * 12 11 10 14 14 H 1.07999 * 120.00151 * 5.40944 * 13 12 11 15 15 C 1.38627 * 119.99841 * 185.41354 * 13 12 11 16 16 N 1.31582 * 120.00159 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00142 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46988 * 59.99939 * 17 15 13 19 19 H 1.48504 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47097 * 299.99876 * 17 15 13 21 21 C 1.38907 * 119.99848 * 359.78563 * 11 10 9 22 22 C 1.38009 * 119.99943 * 359.97438 * 21 11 10 23 23 C 1.50703 * 109.46899 * 240.00662 * 2 1 3 24 24 C 1.33987 * 124.92747 * 100.00366 * 23 2 1 25 25 C 1.46785 * 106.18803 * 179.73007 * 24 23 2 26 26 C 1.39405 * 134.36884 * 179.97438 * 25 24 23 27 27 C 1.36735 * 119.71283 * 179.97438 * 26 25 24 28 28 C 1.38745 * 120.41936 * 359.97438 * 27 26 25 29 29 C 1.37847 * 120.68294 * 0.02889 * 28 27 26 30 30 C 1.38940 * 119.81989 * 359.97438 * 29 28 27 31 31 O 1.34453 * 124.91659 * 279.69276 * 23 2 1 32 32 H 1.08995 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47038 * 300.00263 * 1 2 3 34 34 H 1.09007 * 109.46971 * 59.99214 * 1 2 3 35 35 H 0.97000 * 120.00038 * 95.00338 * 4 2 1 36 36 H 0.96995 * 119.99708 * 354.74415 * 7 5 4 37 37 H 1.08001 * 119.99760 * 0.02562 * 9 8 7 38 38 H 1.08004 * 119.99888 * 180.22381 * 10 9 8 39 39 H 0.96993 * 120.00033 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.00194 * 179.97438 * 21 11 10 41 41 H 1.08004 * 119.99851 * 179.97438 * 22 21 11 42 42 H 1.08007 * 126.90720 * 359.72831 * 24 23 2 43 43 H 1.07999 * 120.14240 * 359.97438 * 26 25 24 44 44 H 1.08004 * 119.78999 * 180.02562 * 27 26 25 45 45 H 1.08004 * 119.65726 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.08720 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8575 1.1612 2.4119 7 7 2.5968 -0.6537 3.4574 8 6 2.8353 0.0673 4.6338 9 6 3.2985 1.3751 4.5652 10 6 3.5293 2.0871 5.7246 11 6 3.3077 1.4929 6.9604 12 8 3.5393 2.1919 8.1012 13 6 3.4232 1.5206 9.2645 14 1 3.2430 0.4558 9.2579 15 6 3.5352 2.1972 10.4693 16 7 3.7552 3.4944 10.4774 17 14 3.3736 1.2672 12.0813 18 1 4.4260 0.2222 12.1575 19 1 3.5306 2.2123 13.2160 20 1 2.0352 0.6278 12.1520 21 6 2.8494 0.1835 7.0292 22 6 2.6138 -0.5270 5.8697 23 6 2.0323 -0.7103 -1.2306 24 6 2.4679 -0.1031 -2.3427 25 6 2.8601 -1.1740 -3.2668 26 6 3.3802 -1.2039 -4.5598 27 6 3.6441 -2.4055 -5.1566 28 6 3.3979 -3.5934 -4.4832 29 6 2.8838 -3.5834 -3.2042 30 6 2.6085 -2.3732 -2.5797 31 8 2.1138 -2.0452 -1.3693 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5140 -0.8900 35 1 2.2490 -1.6318 1.1525 36 1 2.7552 -1.6103 3.4343 37 1 3.4743 1.8360 3.6044 38 1 3.8861 3.1051 5.6712 39 1 3.8332 3.9678 11.3204 40 1 2.6774 -0.2787 7.9900 41 1 2.2578 -1.5453 5.9232 42 1 2.5199 0.9605 -2.5230 43 1 3.5739 -0.2820 -5.0879 44 1 4.0474 -2.4301 -6.1582 45 1 3.6112 -4.5356 -4.9661 46 1 2.6954 -4.5138 -2.6891 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043572472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:54 Heat of formation + Delta-G solvation = -11.722556 kcal Electronic energy + Delta-G solvation = -30436.683746 eV Core-core repulsion = 26065.092130 eV Total energy + Delta-G solvation = -4371.591616 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.55137 -41.67580 -40.50385 -38.95669 -38.39149 -36.69566 -35.44449 -34.18658 -33.83943 -32.05094 -31.84939 -31.36757 -29.62176 -29.14856 -27.28434 -25.35671 -23.99775 -23.81771 -23.33196 -22.55051 -21.92307 -21.71010 -20.11509 -19.44549 -19.02163 -18.50446 -18.33871 -17.56106 -17.26890 -16.71736 -16.49988 -16.32061 -16.16233 -15.98387 -15.48695 -15.42424 -15.08607 -14.97216 -14.82768 -14.52934 -14.45841 -14.16698 -14.06716 -13.81789 -13.54944 -13.29062 -13.27068 -13.15926 -13.04617 -12.78625 -12.69475 -12.53150 -12.38517 -12.13607 -11.88843 -11.41441 -11.38423 -11.15440 -10.96387 -10.57414 -10.31151 -9.82529 -9.61468 -9.17734 -8.56230 -8.43083 -6.10373 -0.11497 0.38406 0.54499 0.59057 1.17798 1.38071 1.48465 1.51658 1.54541 1.63804 2.05047 2.21041 2.76473 2.86054 3.08958 3.19295 3.23979 3.53872 3.68114 3.96554 4.00697 4.06972 4.08939 4.12564 4.15351 4.24884 4.38561 4.51686 4.51992 4.59276 4.63965 4.68866 4.75910 4.79882 4.91010 5.07128 5.12743 5.18720 5.22178 5.26317 5.31896 5.32429 5.42398 5.44061 5.51890 5.59250 5.70402 5.73074 5.92174 6.04947 6.14808 6.19843 6.93816 7.01106 7.45625 7.82335 8.80079 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.001444 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.155081 B =19391.183204 C =19648.545030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.246 3.754 3 H 0.115 0.885 4 N -0.727 5.727 5 C 0.704 3.296 6 O -0.611 6.611 7 N -0.662 5.662 8 C 0.084 3.916 9 C -0.072 4.072 10 C -0.187 4.187 11 C 0.106 3.894 12 O -0.232 6.232 13 C -0.412 4.412 14 H 0.106 0.894 15 C -0.025 4.025 16 N -0.922 5.922 17 Si 1.020 2.980 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.256 1.256 21 C -0.218 4.218 22 C -0.082 4.082 23 C 0.020 3.980 24 C -0.193 4.193 25 C -0.154 4.154 26 C -0.082 4.082 27 C -0.137 4.137 28 C -0.090 4.090 29 C -0.120 4.120 30 C 0.029 3.971 31 O -0.199 6.199 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.413 0.587 36 H 0.421 0.579 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.272 0.728 40 H 0.132 0.868 41 H 0.157 0.843 42 H 0.177 0.823 43 H 0.143 0.857 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.039 -18.252 -32.018 36.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.141 3.859 3 H 0.133 0.867 4 N -0.384 5.384 5 C 0.405 3.595 6 O -0.490 6.490 7 N -0.311 5.311 8 C -0.010 4.010 9 C -0.093 4.093 10 C -0.207 4.207 11 C 0.055 3.945 12 O -0.139 6.139 13 C -0.488 4.488 14 H 0.123 0.877 15 C -0.222 4.222 16 N -0.561 5.561 17 Si 0.839 3.161 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.238 4.238 22 C -0.102 4.102 23 C -0.028 4.028 24 C -0.212 4.212 25 C -0.155 4.155 26 C -0.100 4.100 27 C -0.154 4.154 28 C -0.107 4.107 29 C -0.138 4.138 30 C -0.018 4.018 31 O -0.101 6.101 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.249 0.751 36 H 0.259 0.741 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.175 0.825 42 H 0.194 0.806 43 H 0.161 0.839 44 H 0.174 0.826 45 H 0.182 0.818 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.286 -17.004 -31.656 36.083 hybrid contribution 0.149 -0.436 0.892 1.004 sum -3.137 -17.440 -30.764 35.502 Atomic orbital electron populations 1.22207 0.92585 1.03339 1.03579 1.19398 0.95014 0.95026 0.76433 0.86745 1.44952 1.71390 1.14515 1.07501 1.15958 0.77938 0.84812 0.80829 1.90950 1.57420 1.15945 1.84657 1.42109 1.68669 1.11952 1.08387 1.17102 1.05706 0.92977 0.85247 1.20718 0.97402 0.94088 0.97045 1.20231 1.09504 1.01005 0.89923 1.19864 0.94845 0.92226 0.87576 1.83967 1.78898 1.38536 1.12496 1.21815 1.51684 0.93925 0.81423 0.87687 1.26615 0.95969 0.96846 1.02758 1.70203 1.47782 1.09510 1.28565 0.84633 0.79909 0.77389 0.74185 1.18000 1.19955 1.18067 1.21113 1.08278 0.94608 0.99758 1.20783 0.99257 1.00900 0.89237 1.22281 1.02460 0.80371 0.97700 1.22550 1.05185 1.00628 0.92854 1.20228 1.05424 0.92632 0.97174 1.20645 0.97137 1.00120 0.92091 1.21216 1.00959 0.91575 1.01691 1.21399 0.96493 1.00202 0.92652 1.20332 1.03163 0.94366 0.95933 1.20069 1.00808 0.96708 0.84241 1.83860 1.69477 1.23687 1.33112 0.91410 0.92062 0.89452 0.75076 0.74066 0.85192 0.86956 0.91953 0.85022 0.82500 0.80583 0.83887 0.82593 0.81758 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.47 71.98 0.68 -1.90 16 2 C 0.25 4.37 3.01 44.25 0.13 4.50 16 3 H 0.11 2.24 7.55 -2.39 -0.02 2.22 16 4 N -0.73 -13.59 5.07 -461.42 -2.34 -15.93 16 5 C 0.70 18.62 8.26 179.05 1.48 20.10 16 6 O -0.61 -21.45 13.72 -4.00 -0.05 -21.50 16 7 N -0.66 -16.24 5.35 -317.05 -1.70 -17.94 16 8 C 0.08 2.82 6.27 38.16 0.24 3.06 16 9 C -0.07 -2.85 8.65 22.38 0.19 -2.66 16 10 C -0.19 -8.61 9.98 22.37 0.22 -8.39 16 11 C 0.11 5.37 6.65 22.59 0.15 5.52 16 12 O -0.23 -14.18 9.76 -22.91 -0.22 -14.41 16 13 C -0.41 -23.96 9.44 67.91 0.64 -23.32 16 14 H 0.11 5.47 5.29 -2.91 -0.02 5.46 16 15 C -0.02 -1.40 5.49 84.82 0.47 -0.94 16 16 N -0.92 -57.23 13.67 21.61 0.30 -56.93 16 17 Si 1.02 42.68 29.55 68.60 2.03 44.71 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 C -0.22 -9.29 9.13 22.38 0.20 -9.09 16 22 C -0.08 -2.71 9.96 22.38 0.22 -2.49 16 23 C 0.02 0.34 6.05 24.72 0.15 0.49 16 24 C -0.19 -3.17 10.99 23.54 0.26 -2.91 16 25 C -0.15 -2.63 6.40 -20.21 -0.13 -2.76 16 26 C -0.08 -1.04 10.05 22.20 0.22 -0.81 16 27 C -0.14 -1.25 9.98 22.04 0.22 -1.03 16 28 C -0.09 -0.79 10.01 22.30 0.22 -0.57 16 29 C -0.12 -1.52 10.07 22.35 0.23 -1.30 16 30 C 0.03 0.51 7.42 22.99 0.17 0.68 16 31 O -0.20 -3.67 10.18 -8.96 -0.09 -3.77 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.41 5.80 8.29 -92.71 -0.77 5.03 16 36 H 0.42 6.76 8.83 -92.71 -0.82 5.94 16 37 H 0.13 5.01 6.45 -2.91 -0.02 4.99 16 38 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.13 5.54 5.71 -2.91 -0.02 5.52 16 41 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 45 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 46 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -80.35 397.16 3.36 -76.98 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.53 Total: 32.60 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 5.98 Total: -23.81 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.74 Total: -90.80 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.37 Total: -39.67 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -80.35 3.36 -76.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.260 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds