Wall clock time and date at job start Tue Mar 31 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 116.99836 * 2 1 4 4 C 1.38836 * 119.90155 * 179.97438 * 3 2 1 5 5 C 1.37886 * 120.09197 * 179.97438 * 4 3 2 6 6 C 1.39614 * 119.90666 * 0.02562 * 5 4 3 7 7 C 1.47788 * 120.09567 * 179.97438 * 6 5 4 8 8 C 1.35870 * 126.69562 * 161.08211 * 7 6 5 9 9 N 1.33980 * 108.27446 * 179.89187 * 8 7 6 10 10 C 1.31383 * 109.65041 * 0.37920 * 9 8 7 11 11 S 1.76206 * 125.67764 * 179.77120 * 10 9 8 12 12 C 1.80998 * 100.00033 * 359.97438 * 11 10 9 13 13 C 1.50696 * 109.47202 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00220 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99742 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00206 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47147 * 119.99603 * 17 15 13 20 20 H 1.48496 * 109.46796 * 239.99859 * 17 15 13 21 21 N 1.36446 * 108.64307 * 359.76470 * 10 9 8 22 22 C 1.40150 * 126.59397 * 180.02562 * 21 10 9 23 23 C 1.38833 * 120.06976 * 111.76708 * 22 21 10 24 24 C 1.38123 * 119.93169 * 179.79439 * 23 22 21 25 25 C 1.38275 * 120.06760 * 0.48206 * 24 23 22 26 26 C 1.38281 * 120.13568 * 359.74922 * 25 24 23 27 27 C 1.38121 * 120.06345 * 0.02562 * 26 25 24 28 28 C 1.39622 * 119.81039 * 359.97438 * 6 5 4 29 29 C 1.37880 * 119.90662 * 0.02562 * 28 6 5 30 30 H 1.08996 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46909 * 300.00220 * 1 2 3 32 32 H 1.09003 * 109.47113 * 60.00231 * 1 2 3 33 33 H 1.08000 * 119.95463 * 0.25358 * 4 3 2 34 34 H 1.07997 * 120.04342 * 180.02562 * 5 4 3 35 35 H 1.08000 * 125.86212 * 0.03050 * 8 7 6 36 36 H 1.08998 * 109.47041 * 300.00098 * 12 11 10 37 37 H 1.08998 * 109.46904 * 60.00190 * 12 11 10 38 38 H 0.97005 * 119.99499 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.03436 * 359.97438 * 23 22 21 40 40 H 1.08007 * 119.96660 * 180.25049 * 24 23 22 41 41 H 1.08000 * 119.93559 * 179.72798 * 25 24 23 42 42 H 1.07993 * 119.97117 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.03171 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.04205 * 179.97438 * 28 6 5 45 45 H 1.08004 * 119.95317 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 3.4327 1.2814 0.0005 5 6 4.0627 2.5080 0.0000 6 6 3.3043 3.6801 -0.0005 7 6 3.9752 4.9969 -0.0005 8 6 3.4257 6.1881 -0.3542 9 7 4.3589 7.1393 -0.2145 10 6 5.4806 6.5994 0.2056 11 16 6.9818 7.4653 0.5239 12 6 6.4668 9.1502 0.1094 13 6 7.6245 10.0935 0.3117 14 1 8.5755 9.7151 0.6562 15 6 7.4693 11.4398 0.0581 16 7 6.3110 11.9007 -0.3609 17 14 8.9042 12.6092 0.3095 18 1 10.0871 11.8466 0.7830 19 1 9.2282 13.2786 -0.9757 20 1 8.5375 13.6320 1.3218 21 7 5.2894 5.2567 0.3546 22 6 6.2393 4.3201 0.7846 23 6 6.0906 3.6928 2.0141 24 6 7.0261 2.7672 2.4332 25 6 8.1153 2.4724 1.6339 26 6 8.2687 3.0991 0.4108 27 6 7.3340 4.0222 -0.0157 28 6 1.9101 3.6048 -0.0011 29 6 1.2881 2.3742 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0186 0.3742 -0.0032 34 1 5.1413 2.5617 0.0000 35 1 2.4103 6.3422 -0.6882 36 1 6.1467 9.1865 -0.9319 37 1 5.6395 9.4463 0.7544 38 1 6.2017 12.8480 -0.5390 39 1 5.2426 3.9262 2.6410 40 1 6.9089 2.2758 3.3878 41 1 8.8479 1.7515 1.9656 42 1 9.1202 2.8666 -0.2115 43 1 7.4542 4.5110 -0.9712 44 1 1.3197 4.5091 -0.0011 45 1 0.2097 2.3150 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044085329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:34 Heat of formation + Delta-G solvation = 76.543710 kcal Electronic energy + Delta-G solvation = -29035.540115 eV Core-core repulsion = 25110.528882 eV Total energy + Delta-G solvation = -3925.011232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89106 -40.17429 -39.10321 -37.55203 -33.99800 -33.14157 -31.81270 -31.27789 -31.01070 -29.34085 -28.65018 -28.30249 -27.04254 -23.64227 -23.28109 -23.02837 -22.76016 -22.30850 -20.86737 -20.12377 -18.60813 -18.23356 -16.66478 -16.45752 -16.23281 -16.01679 -15.84841 -15.71850 -15.26609 -14.77883 -14.50873 -14.34646 -14.23842 -13.99448 -13.64108 -13.59275 -13.45420 -13.02952 -12.98116 -12.80608 -12.42781 -12.35091 -12.26305 -11.98731 -11.77871 -11.48756 -11.38687 -11.03363 -10.91621 -10.79139 -10.43557 -9.92117 -9.70424 -9.62577 -9.34239 -9.23093 -9.19470 -9.10781 -8.76710 -8.61603 -7.97286 -6.57966 -6.17685 -4.25011 0.81636 1.01599 1.12786 1.21325 1.98511 2.30674 2.96524 2.99996 3.25283 3.31397 3.32320 3.36255 3.50222 3.60592 3.76531 4.34977 4.51845 4.59276 4.64838 4.72827 4.74297 4.79455 4.81713 4.91920 5.09438 5.13818 5.17133 5.18733 5.18923 5.29871 5.30928 5.43936 5.53500 5.66747 5.78404 5.81619 6.03848 6.05839 6.11880 6.16245 6.27445 6.30120 6.49861 6.59940 6.62419 6.89220 7.12962 7.18446 7.29199 7.33721 7.71674 7.97176 8.23280 8.76231 9.38064 10.92772 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.002483 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.062394 B =11273.645171 C =13030.995034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.119 3.881 4 C -0.142 4.142 5 C -0.082 4.082 6 C -0.031 4.031 7 C 0.001 3.999 8 C 0.015 3.985 9 N -0.479 5.479 10 C 0.233 3.767 11 S -0.065 6.065 12 C 0.081 3.919 13 C -0.524 4.524 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.882 5.882 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 N -0.412 5.412 22 C 0.124 3.876 23 C -0.102 4.102 24 C -0.110 4.110 25 C -0.111 4.111 26 C -0.107 4.107 27 C -0.101 4.101 28 C -0.066 4.066 29 C -0.200 4.200 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.172 0.828 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.266 0.734 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -25.462 2.297 26.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.073 3.927 4 C -0.161 4.161 5 C -0.100 4.100 6 C -0.032 4.032 7 C -0.112 4.112 8 C -0.137 4.137 9 N -0.199 5.199 10 C -0.134 4.134 11 S 0.167 5.833 12 C -0.066 4.066 13 C -0.564 4.564 14 H 0.085 0.915 15 C -0.135 4.135 16 N -0.519 5.519 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 N -0.096 5.096 22 C 0.034 3.966 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.085 4.085 29 C -0.219 4.219 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.190 0.810 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.931 -25.074 2.493 25.886 hybrid contribution -0.831 0.532 -0.202 1.007 sum -6.762 -24.542 2.291 25.560 Atomic orbital electron populations 1.23052 0.78463 1.03847 1.01447 1.86064 1.21336 1.27055 1.88832 1.19074 0.92267 0.84092 0.97235 1.20269 0.91248 0.98316 1.06269 1.21253 1.00178 0.90844 0.97746 1.17775 0.92536 0.89449 1.03478 1.19517 0.84289 0.95042 1.12366 1.22371 0.99543 0.87360 1.04391 1.70876 0.98571 1.30814 1.19656 1.26059 1.01567 0.82016 1.03740 1.85559 1.04661 1.09572 1.83524 1.21264 1.00215 0.83817 1.01309 1.20660 0.96695 0.91527 1.47541 0.91522 1.24938 0.96330 0.97734 0.94520 1.69999 1.23257 1.14690 1.43969 0.86308 0.81915 0.80499 0.77987 1.19437 1.20659 1.20668 1.42923 1.08664 1.05971 1.52064 1.17573 0.91158 0.93414 0.94491 1.21203 1.00054 0.96699 0.94142 1.21032 0.94126 0.97612 1.00088 1.21274 0.97659 0.99597 0.94396 1.21068 0.98706 0.96134 0.96665 1.21287 0.93444 0.97363 0.99906 1.20892 0.92804 0.97456 0.97319 1.21100 0.99987 0.91946 1.08856 0.88337 0.92618 0.92586 0.85211 0.85230 0.81048 0.93027 0.93046 0.92434 0.85520 0.85196 0.85400 0.84985 0.84980 0.85051 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.15 10.49 -19.51 -0.20 -3.36 16 3 C 0.12 1.28 6.69 -39.14 -0.26 1.02 16 4 C -0.14 -1.60 9.97 -39.49 -0.39 -1.99 16 5 C -0.08 -1.02 8.62 -39.20 -0.34 -1.36 16 6 C -0.03 -0.41 5.86 -104.96 -0.62 -1.03 16 7 C 0.00 0.02 6.73 -81.75 -0.55 -0.53 16 8 C 0.01 0.26 11.25 -17.46 -0.20 0.06 16 9 N -0.48 -10.44 10.56 -13.09 -0.14 -10.58 16 10 C 0.23 4.89 7.92 -88.34 -0.70 4.19 16 11 S -0.07 -1.45 21.82 -107.50 -2.35 -3.80 16 12 C 0.08 2.18 4.94 36.00 0.18 2.36 16 13 C -0.52 -14.69 9.13 -34.44 -0.31 -15.01 16 14 H 0.07 1.82 7.71 -52.49 -0.40 1.42 16 15 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 16 N -0.88 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 N -0.41 -7.20 2.85 -56.96 -0.16 -7.37 16 22 C 0.12 1.83 3.17 -83.61 -0.27 1.56 16 23 C -0.10 -1.29 8.65 -39.40 -0.34 -1.64 16 24 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 25 C -0.11 -1.02 10.04 -39.55 -0.40 -1.42 16 26 C -0.11 -1.11 10.04 -39.61 -0.40 -1.50 16 27 C -0.10 -1.34 9.65 -39.40 -0.38 -1.72 16 28 C -0.07 -0.74 9.57 -39.20 -0.38 -1.12 16 29 C -0.20 -2.00 9.02 -39.50 -0.36 -2.36 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 32 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.64 4.99 -52.49 -0.26 1.38 16 35 H 0.17 2.44 7.62 -52.49 -0.40 2.04 16 36 H 0.05 1.48 8.14 -51.92 -0.42 1.06 16 37 H 0.05 1.48 8.14 -51.92 -0.42 1.06 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.13 1.28 7.35 -52.49 -0.39 0.90 16 45 H 0.13 0.97 6.28 -52.48 -0.33 0.64 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -32.94 396.76 -11.88 -44.82 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.52 Total: 2.28 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -5.21 Total: -18.96 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.44 Total: -43.17 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.20 Total: -3.36 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.35 Total: -3.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.94 -11.88 -44.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.366 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds