Wall clock time and date at job start Tue Mar 31 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 116.99836 * 2 1 4 4 C 1.38836 * 119.90155 * 179.97438 * 3 2 1 5 5 C 1.37886 * 120.09197 * 179.97438 * 4 3 2 6 6 C 1.39614 * 119.90666 * 0.02562 * 5 4 3 7 7 C 1.47788 * 120.09567 * 179.97438 * 6 5 4 8 8 C 1.35870 * 126.69562 * 161.08211 * 7 6 5 9 9 N 1.33980 * 108.27446 * 179.89187 * 8 7 6 10 10 C 1.31383 * 109.65041 * 0.37920 * 9 8 7 11 11 S 1.76206 * 125.67764 * 179.77120 * 10 9 8 12 12 C 1.80998 * 100.00033 * 359.97438 * 11 10 9 13 13 C 1.50696 * 109.47202 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00220 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99742 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00206 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47147 * 119.99603 * 17 15 13 20 20 H 1.48496 * 109.46796 * 239.99859 * 17 15 13 21 21 N 1.36446 * 108.64307 * 359.76470 * 10 9 8 22 22 C 1.40150 * 126.59397 * 180.02562 * 21 10 9 23 23 C 1.38833 * 120.06976 * 111.76708 * 22 21 10 24 24 C 1.38123 * 119.93169 * 179.79439 * 23 22 21 25 25 C 1.38275 * 120.06760 * 0.48206 * 24 23 22 26 26 C 1.38281 * 120.13568 * 359.74922 * 25 24 23 27 27 C 1.38121 * 120.06345 * 0.02562 * 26 25 24 28 28 C 1.39622 * 119.81039 * 359.97438 * 6 5 4 29 29 C 1.37880 * 119.90662 * 0.02562 * 28 6 5 30 30 H 1.08996 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46909 * 300.00220 * 1 2 3 32 32 H 1.09003 * 109.47113 * 60.00231 * 1 2 3 33 33 H 1.08000 * 119.95463 * 0.25358 * 4 3 2 34 34 H 1.07997 * 120.04342 * 180.02562 * 5 4 3 35 35 H 1.08000 * 125.86212 * 0.03050 * 8 7 6 36 36 H 1.08998 * 109.47041 * 300.00098 * 12 11 10 37 37 H 1.08998 * 109.46904 * 60.00190 * 12 11 10 38 38 H 0.97005 * 119.99499 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.03436 * 359.97438 * 23 22 21 40 40 H 1.08007 * 119.96660 * 180.25049 * 24 23 22 41 41 H 1.08000 * 119.93559 * 179.72798 * 25 24 23 42 42 H 1.07993 * 119.97117 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.03171 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.04205 * 179.97438 * 28 6 5 45 45 H 1.08004 * 119.95317 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 3.4327 1.2814 0.0005 5 6 4.0627 2.5080 0.0000 6 6 3.3043 3.6801 -0.0005 7 6 3.9752 4.9969 -0.0005 8 6 3.4257 6.1881 -0.3542 9 7 4.3589 7.1393 -0.2145 10 6 5.4806 6.5994 0.2056 11 16 6.9818 7.4653 0.5239 12 6 6.4668 9.1502 0.1094 13 6 7.6245 10.0935 0.3117 14 1 8.5755 9.7151 0.6562 15 6 7.4693 11.4398 0.0581 16 7 6.3110 11.9007 -0.3609 17 14 8.9042 12.6092 0.3095 18 1 10.0871 11.8466 0.7830 19 1 9.2282 13.2786 -0.9757 20 1 8.5375 13.6320 1.3218 21 7 5.2894 5.2567 0.3546 22 6 6.2393 4.3201 0.7846 23 6 6.0906 3.6928 2.0141 24 6 7.0261 2.7672 2.4332 25 6 8.1153 2.4724 1.6339 26 6 8.2687 3.0991 0.4108 27 6 7.3340 4.0222 -0.0157 28 6 1.9101 3.6048 -0.0011 29 6 1.2881 2.3742 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0186 0.3742 -0.0032 34 1 5.1413 2.5617 0.0000 35 1 2.4103 6.3422 -0.6882 36 1 6.1467 9.1865 -0.9319 37 1 5.6395 9.4463 0.7544 38 1 6.2017 12.8480 -0.5390 39 1 5.2426 3.9262 2.6410 40 1 6.9089 2.2758 3.3878 41 1 8.8479 1.7515 1.9656 42 1 9.1202 2.8666 -0.2115 43 1 7.4542 4.5110 -0.9712 44 1 1.3197 4.5091 -0.0011 45 1 0.2097 2.3150 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044085329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:33 Heat of formation + Delta-G solvation = 60.117295 kcal Electronic energy + Delta-G solvation = -29036.252417 eV Core-core repulsion = 25110.528882 eV Total energy + Delta-G solvation = -3925.723535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.22335 -40.98876 -40.07375 -38.39531 -35.39625 -35.11419 -32.84955 -32.16804 -31.91487 -30.79649 -30.35692 -29.33861 -27.87424 -25.36509 -24.55360 -24.23429 -23.65827 -23.30801 -22.18211 -21.26143 -19.73321 -19.10669 -18.52235 -17.55624 -17.31065 -17.05825 -16.87499 -16.63805 -16.55435 -16.35775 -15.67921 -15.42069 -15.34791 -14.93086 -14.80728 -14.61586 -14.51305 -14.45481 -14.39478 -14.33071 -13.85176 -13.67956 -13.23699 -12.77806 -12.75341 -12.66324 -12.59860 -12.42363 -12.33450 -12.19772 -11.83060 -11.62027 -11.36133 -11.16296 -11.05365 -10.81956 -10.51216 -10.13814 -10.01533 -9.79394 -9.17403 -8.33024 -8.16094 -6.50517 -0.23594 0.07294 0.25059 0.33376 0.37308 1.05119 1.40510 1.41934 1.48841 1.57445 1.81400 1.91587 2.33122 2.36455 2.61677 2.78728 3.00928 3.43893 3.73831 3.82699 3.84521 3.86362 3.98550 4.15267 4.16534 4.26440 4.32824 4.37449 4.40570 4.42604 4.51409 4.54576 4.59387 4.76653 4.87065 4.91953 4.94924 5.01713 5.03799 5.12852 5.25292 5.30831 5.33986 5.43390 5.51640 5.54121 5.56276 5.62631 5.74629 5.80503 6.11139 6.38632 6.58055 6.79437 7.18417 8.79446 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.002483 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.062394 B =11273.645171 C =13030.995034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.126 3.874 4 C -0.150 4.150 5 C -0.078 4.078 6 C -0.063 4.063 7 C 0.029 3.971 8 C -0.018 4.018 9 N -0.518 5.518 10 C 0.192 3.808 11 S -0.041 6.041 12 C 0.090 3.910 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.015 3.985 16 N -0.922 5.922 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.273 1.273 21 N -0.401 5.401 22 C 0.089 3.911 23 C -0.112 4.112 24 C -0.102 4.102 25 C -0.096 4.096 26 C -0.102 4.102 27 C -0.120 4.120 28 C -0.061 4.061 29 C -0.197 4.197 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.198 0.802 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.271 0.729 39 H 0.118 0.882 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.159 0.841 43 H 0.114 0.886 44 H 0.145 0.855 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 -28.924 3.404 29.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.080 3.920 4 C -0.169 4.169 5 C -0.097 4.097 6 C -0.064 4.064 7 C -0.085 4.085 8 C -0.168 4.168 9 N -0.239 5.239 10 C -0.176 4.176 11 S 0.191 5.809 12 C -0.058 4.058 13 C -0.584 4.584 14 H 0.090 0.910 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.806 3.194 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.198 1.198 21 N -0.083 5.083 22 C 0.000 4.000 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.139 4.139 28 C -0.080 4.080 29 C -0.216 4.216 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.215 0.785 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.177 0.823 43 H 0.132 0.868 44 H 0.162 0.838 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.425 -28.580 3.608 29.314 hybrid contribution -1.190 1.211 -0.539 1.782 sum -6.615 -27.369 3.068 28.324 Atomic orbital electron populations 1.23394 0.76267 1.05750 1.02464 1.86066 1.23608 1.26417 1.88320 1.19240 0.92339 0.84852 0.95543 1.20417 0.91931 0.98204 1.06317 1.21220 1.00012 0.91039 0.97439 1.17820 0.93545 0.88185 1.06898 1.20059 0.83662 0.96044 1.08772 1.22815 1.00342 0.87273 1.06377 1.70733 0.99810 1.33214 1.20191 1.25599 1.01034 0.83684 1.07261 1.84936 1.05766 1.05886 1.84330 1.20768 0.99102 0.87633 0.98293 1.21008 0.97014 0.92454 1.47939 0.91017 1.26020 0.99407 0.99615 0.93637 1.70138 1.25722 1.15412 1.44688 0.85129 0.78162 0.77829 0.78289 1.18225 1.19746 1.19785 1.43028 1.09565 1.05170 1.50574 1.17901 0.91690 0.94308 0.96102 1.21253 1.00876 0.97695 0.93337 1.21423 0.93190 0.96206 1.01203 1.21744 0.97581 0.98949 0.93121 1.21418 0.98369 0.94737 0.97534 1.21314 0.94206 0.98880 0.99518 1.21108 0.91953 0.98804 0.96093 1.21376 1.01484 0.90929 1.07777 0.86208 0.91525 0.91552 0.83762 0.85723 0.78533 0.96555 0.96620 0.91996 0.86407 0.82089 0.81390 0.82335 0.86800 0.83757 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.51 10.49 -92.72 -0.97 -6.49 16 3 C 0.13 2.41 6.69 22.55 0.15 2.56 16 4 C -0.15 -3.09 9.97 22.33 0.22 -2.87 16 5 C -0.08 -1.91 8.62 22.52 0.19 -1.71 16 6 C -0.06 -1.68 5.86 -20.08 -0.12 -1.80 16 7 C 0.03 1.00 6.73 40.05 0.27 1.27 16 8 C -0.02 -0.67 11.25 83.82 0.94 0.28 16 9 N -0.52 -24.54 10.56 -195.31 -2.06 -26.60 16 10 C 0.19 8.67 7.92 179.55 1.42 10.09 16 11 S -0.04 -1.95 21.82 -56.49 -1.23 -3.18 16 12 C 0.09 5.24 4.94 71.23 0.35 5.59 16 13 C -0.54 -31.98 9.13 25.60 0.23 -31.75 16 14 H 0.07 4.04 7.71 -2.91 -0.02 4.01 16 15 C 0.01 0.85 5.46 84.65 0.46 1.32 16 16 N -0.92 -56.66 13.29 21.45 0.28 -56.37 16 17 Si 0.98 44.20 29.54 68.60 2.03 46.23 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 N -0.40 -14.84 2.85 -334.13 -0.95 -15.80 16 22 C 0.09 2.70 3.17 38.10 0.12 2.82 16 23 C -0.11 -2.81 8.65 22.38 0.19 -2.62 16 24 C -0.10 -1.75 10.04 22.25 0.22 -1.53 16 25 C -0.10 -1.41 10.04 22.29 0.22 -1.19 16 26 C -0.10 -1.90 10.04 22.25 0.22 -1.68 16 27 C -0.12 -3.24 9.65 22.39 0.22 -3.02 16 28 C -0.06 -1.30 9.57 22.52 0.22 -1.08 16 29 C -0.20 -3.43 9.02 22.33 0.20 -3.22 16 30 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 32 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.12 3.14 4.99 -2.91 -0.01 3.12 16 35 H 0.20 5.89 7.62 -2.91 -0.02 5.87 16 36 H 0.02 1.02 8.14 -2.40 -0.02 1.00 16 37 H 0.02 0.98 8.14 -2.40 -0.02 0.96 16 38 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.14 2.64 7.35 -2.91 -0.02 2.62 16 45 H 0.16 1.78 6.28 -2.91 -0.02 1.76 16 Total: -1.00 -77.92 396.76 4.97 -72.95 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 1.02 Total: 16.56 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 6.86 Total: -27.30 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -2.73 Total: -98.77 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.97 Total: -6.49 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -1.23 Total: -3.18 kcal Total: -77.92 4.97 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.066 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds