Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29584 * 1 3 3 Si 1.86798 * 119.99436 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00156 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00250 * 3 2 1 6 6 H 1.48503 * 109.47052 * 149.99945 * 3 2 1 7 7 C 1.46310 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 S 1.71202 * 119.99947 * 0.27601 * 7 2 1 10 10 C 1.76195 * 99.99760 * 179.72130 * 9 7 2 11 11 N 1.31557 * 125.67451 * 0.02927 * 10 9 7 12 12 C 1.33275 * 109.64167 * 179.97438 * 11 10 9 13 13 C 1.36607 * 108.24836 * 359.97438 * 12 11 10 14 14 C 1.47699 * 126.69285 * 180.02562 * 13 12 11 15 15 C 1.39686 * 120.14892 * 184.69415 * 14 13 12 16 16 C 1.37916 * 119.84004 * 179.76508 * 15 14 13 17 17 C 1.38400 * 120.15154 * 0.51401 * 16 15 14 18 18 C 1.38360 * 120.31192 * 359.74100 * 17 16 15 19 19 N 1.48015 * 119.92053 * 179.97438 * 18 17 16 20 20 O 1.31696 * 119.99445 * 180.02562 * 19 18 17 21 21 O 1.31695 * 120.00186 * 0.02562 * 19 18 17 22 22 C 1.37950 * 120.15197 * 359.97438 * 18 17 16 23 23 N 1.36557 * 125.67485 * 179.71497 * 10 9 7 24 24 C 1.40109 * 126.57420 * 0.02562 * 23 10 9 25 25 C 1.38853 * 120.07085 * 244.75141 * 24 23 10 26 26 C 1.38113 * 119.93270 * 179.70159 * 25 24 23 27 27 C 1.38286 * 120.06640 * 0.59662 * 26 25 24 28 28 C 1.38287 * 120.13578 * 359.67576 * 27 26 25 29 29 C 1.38111 * 120.06754 * 0.02622 * 28 27 26 30 30 H 0.96996 * 120.00564 * 359.97438 * 1 2 3 31 31 H 1.08002 * 125.87581 * 179.97438 * 12 11 10 32 32 H 1.07996 * 120.08046 * 0.02562 * 15 14 13 33 33 H 1.07996 * 119.91762 * 180.23069 * 16 15 14 34 34 H 1.08001 * 119.84348 * 179.71949 * 17 16 15 35 35 H 1.07997 * 120.08133 * 179.97438 * 22 18 17 36 36 H 1.08005 * 120.03061 * 359.97438 * 25 24 23 37 37 H 1.08001 * 119.96780 * 180.31479 * 26 25 24 38 38 H 1.07998 * 119.92997 * 179.70024 * 27 26 25 39 39 H 1.07996 * 119.96318 * 180.02562 * 28 27 26 40 40 H 1.08000 * 120.03086 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2297 1.6178 0.0000 4 1 2.4771 2.0465 -1.4001 5 1 1.4271 2.6527 0.7001 6 1 3.5273 1.4404 0.7001 7 6 2.0274 -1.2671 -0.0006 8 1 3.1075 -1.2669 -0.0010 9 16 1.1715 -2.7497 -0.0084 10 6 2.5213 -3.8822 -0.0144 11 7 3.7959 -3.5565 -0.0122 12 6 4.5407 -4.6618 -0.0177 13 6 3.7038 -5.7415 -0.0231 14 6 4.0992 -7.1646 -0.0297 15 6 3.1271 -8.1623 -0.1336 16 6 3.5038 -9.4890 -0.1440 17 6 4.8404 -9.8329 -0.0411 18 6 5.8081 -8.8499 0.0675 19 7 7.2350 -9.2276 0.1776 20 8 8.1572 -8.2932 0.2816 21 8 7.5824 -10.4979 0.1717 22 6 5.4460 -7.5188 0.0733 23 7 2.4184 -5.2438 -0.0161 24 6 1.2336 -5.9916 -0.0139 25 6 0.9217 -6.7979 1.0727 26 6 -0.2500 -7.5290 1.0746 27 6 -1.1063 -7.4681 -0.0095 28 6 -0.7958 -6.6704 -1.0956 29 6 0.3714 -5.9322 -1.1007 30 1 -0.4851 0.8400 0.0004 31 1 5.6201 -4.6977 -0.0179 32 1 2.0834 -7.8954 -0.2099 33 1 2.7536 -10.2613 -0.2281 34 1 5.1295 -10.8735 -0.0452 35 1 6.2022 -6.7525 0.1585 36 1 1.5927 -6.8499 1.9174 37 1 -0.4956 -8.1524 1.9216 38 1 -2.0197 -8.0445 -0.0078 39 1 -1.4668 -6.6246 -1.9406 40 1 0.6131 -5.3090 -1.9490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044085342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = 147.621551 kcal Electronic energy + Delta-G solvation = -29012.143300 eV Core-core repulsion = 24888.955229 eV Total energy + Delta-G solvation = -4123.188071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.078 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -41.88574 -40.09579 -39.14558 -38.26637 -34.55409 -34.00619 -32.88583 -32.63022 -31.95808 -31.14729 -29.36357 -28.15030 -26.81797 -25.58726 -23.75800 -23.30644 -22.86756 -22.39258 -20.78977 -20.38651 -18.97535 -18.43250 -18.11823 -17.22447 -16.80477 -16.36605 -16.10343 -15.76192 -15.53649 -15.08143 -14.90917 -14.78327 -14.38159 -14.19888 -13.84631 -13.62625 -13.51553 -13.33122 -13.15197 -13.05712 -12.04379 -11.98143 -11.72258 -11.46542 -11.42975 -11.42078 -11.27934 -11.25218 -11.22344 -10.79877 -10.32954 -10.27694 -9.84882 -9.78465 -9.48836 -9.44315 -9.15646 -8.97762 -8.67699 -8.37139 -6.84263 -6.73532 -4.11918 -0.82547 0.47035 0.89500 0.97607 1.00469 1.16054 2.22578 2.40971 3.05400 3.12502 3.16261 3.19190 3.23781 3.49537 3.64541 3.96031 4.10571 4.21768 4.53769 4.61551 4.69534 4.71021 4.72772 4.73389 4.76726 4.92636 4.98600 5.18142 5.27121 5.29968 5.38449 5.49691 5.53437 5.58307 5.64824 5.78333 5.79133 5.92769 6.14226 6.21099 6.22583 6.28427 6.58675 6.60926 6.64514 6.99769 7.23594 7.45410 8.29422 8.45111 8.71917 10.31706 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003075 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.515317 B = 9104.470992 C =11599.801333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.090 3.910 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.616 4.616 8 H 0.110 0.890 9 S 0.196 5.804 10 C 0.221 3.779 11 N -0.492 5.492 12 C 0.052 3.948 13 C -0.061 4.061 14 C 0.036 3.964 15 C -0.095 4.095 16 C -0.102 4.102 17 C -0.078 4.078 18 C 0.009 3.991 19 N -0.016 5.016 20 O -0.168 6.168 21 O -0.177 6.177 22 C -0.058 4.058 23 N -0.418 5.418 24 C 0.128 3.872 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.114 4.114 28 C -0.104 4.104 29 C -0.101 4.101 30 H 0.282 0.718 31 H 0.170 0.830 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -17.844 -0.593 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.128 4.128 3 Si 0.755 3.245 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.764 4.764 8 H 0.128 0.872 9 S 0.436 5.564 10 C -0.142 4.142 11 N -0.212 5.212 12 C -0.104 4.104 13 C -0.174 4.174 14 C 0.032 3.968 15 C -0.114 4.114 16 C -0.121 4.121 17 C -0.098 4.098 18 C -0.077 4.077 19 N 0.463 4.537 20 O -0.363 6.363 21 O -0.370 6.370 22 C -0.079 4.079 23 N -0.105 5.105 24 C 0.037 3.963 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.123 4.123 29 C -0.121 4.121 30 H 0.093 0.907 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.613 -16.792 -0.630 17.425 hybrid contribution 2.097 0.394 0.073 2.135 sum -2.516 -16.398 -0.557 16.599 Atomic orbital electron populations 1.68972 1.07804 1.29750 1.40745 1.26467 0.94323 0.99693 0.92271 0.85963 0.80163 0.79406 0.79001 1.19689 1.20588 1.18603 1.24022 0.97881 0.90043 1.64431 0.87248 1.82204 0.97135 0.94039 1.83004 1.27416 1.00395 0.84013 1.02327 1.70691 0.99825 1.27668 1.23065 1.22547 0.99135 0.87393 1.01371 1.18954 0.84232 0.91861 1.22402 1.17691 0.91163 0.90478 0.97421 1.22355 1.01569 0.92401 0.95064 1.21066 0.94609 0.96646 0.99742 1.21062 0.91837 0.99831 0.97106 1.20112 0.77915 0.95329 1.14340 1.50497 1.04581 1.02730 0.95844 1.96291 1.44062 1.41262 1.54726 1.96254 1.88870 0.95997 1.55895 1.20902 0.96807 0.93926 0.96279 1.42506 1.03110 1.05346 1.59521 1.17605 0.87335 0.95944 0.95441 1.21226 0.97892 0.97306 0.96856 1.21033 0.93537 0.99595 0.98863 1.21274 0.99507 0.98823 0.93625 1.21092 0.96104 0.96070 0.99015 1.21330 0.94356 0.98947 0.97447 0.90669 0.81325 0.83125 0.83533 0.83077 0.82508 0.85403 0.85143 0.85383 0.84946 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.12 13.25 55.97 0.74 -21.38 16 2 C 0.09 2.34 5.68 -15.26 -0.09 2.25 16 3 Si 0.93 20.20 29.64 -169.99 -5.04 15.16 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.62 -16.57 9.48 33.98 0.32 -16.25 16 8 H 0.11 3.07 6.88 -52.49 -0.36 2.71 16 9 S 0.20 4.64 21.24 -107.50 -2.28 2.35 16 10 C 0.22 4.77 7.86 -88.09 -0.69 4.08 16 11 N -0.49 -10.96 9.89 -13.01 -0.13 -11.08 16 12 C 0.05 0.93 11.27 -17.51 -0.20 0.74 16 13 C -0.06 -1.00 6.80 -81.89 -0.56 -1.56 16 14 C 0.04 0.47 5.87 -104.97 -0.62 -0.15 16 15 C -0.09 -1.03 8.66 -39.16 -0.34 -1.37 16 16 C -0.10 -0.87 10.03 -39.64 -0.40 -1.27 16 17 C -0.08 -0.76 9.57 -39.48 -0.38 -1.14 16 18 C 0.01 0.11 6.88 -80.01 -0.55 -0.44 16 19 N -0.02 -0.24 4.98 33.93 0.17 -0.07 16 20 O -0.17 -2.62 19.14 -31.57 -0.60 -3.22 16 21 O -0.18 -2.59 19.14 -31.57 -0.60 -3.20 16 22 C -0.06 -0.73 9.11 -39.16 -0.36 -1.09 16 23 N -0.42 -7.36 2.84 -56.93 -0.16 -7.52 16 24 C 0.13 1.85 3.64 -83.62 -0.30 1.55 16 25 C -0.11 -1.36 7.16 -39.40 -0.28 -1.64 16 26 C -0.11 -1.03 10.04 -39.61 -0.40 -1.42 16 27 C -0.11 -0.98 10.04 -39.55 -0.40 -1.38 16 28 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 29 C -0.10 -1.34 9.75 -39.40 -0.38 -1.72 16 30 H 0.28 6.80 8.27 -40.82 -0.34 6.46 16 31 H 0.17 2.48 7.33 -52.49 -0.38 2.09 16 32 H 0.15 1.63 3.72 -52.49 -0.20 1.43 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.21 7.56 -52.49 -0.40 0.81 16 35 H 0.16 1.88 6.58 -52.49 -0.35 1.54 16 36 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -30.79 372.02 -11.67 -42.46 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.35 Total: 3.13 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -6.01 Total: -22.24 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.62 Total: -40.05 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -1.21 Total: -6.41 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.04 Total: 15.16 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -2.28 Total: 2.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.79 -11.67 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.080 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds