Wall clock time and date at job start Tue Mar 31 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29584 * 1 3 3 Si 1.86798 * 119.99436 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00156 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00250 * 3 2 1 6 6 H 1.48503 * 109.47052 * 149.99945 * 3 2 1 7 7 C 1.46310 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 S 1.71202 * 119.99947 * 0.27601 * 7 2 1 10 10 C 1.76195 * 99.99760 * 179.72130 * 9 7 2 11 11 N 1.31557 * 125.67451 * 0.02927 * 10 9 7 12 12 C 1.33275 * 109.64167 * 179.97438 * 11 10 9 13 13 C 1.36607 * 108.24836 * 359.97438 * 12 11 10 14 14 C 1.47699 * 126.69285 * 180.02562 * 13 12 11 15 15 C 1.39686 * 120.14892 * 184.69415 * 14 13 12 16 16 C 1.37916 * 119.84004 * 179.76508 * 15 14 13 17 17 C 1.38400 * 120.15154 * 0.51401 * 16 15 14 18 18 C 1.38360 * 120.31192 * 359.74100 * 17 16 15 19 19 N 1.48015 * 119.92053 * 179.97438 * 18 17 16 20 20 O 1.31696 * 119.99445 * 180.02562 * 19 18 17 21 21 O 1.31695 * 120.00186 * 0.02562 * 19 18 17 22 22 C 1.37950 * 120.15197 * 359.97438 * 18 17 16 23 23 N 1.36557 * 125.67485 * 179.71497 * 10 9 7 24 24 C 1.40109 * 126.57420 * 0.02562 * 23 10 9 25 25 C 1.38853 * 120.07085 * 244.75141 * 24 23 10 26 26 C 1.38113 * 119.93270 * 179.70159 * 25 24 23 27 27 C 1.38286 * 120.06640 * 0.59662 * 26 25 24 28 28 C 1.38287 * 120.13578 * 359.67576 * 27 26 25 29 29 C 1.38111 * 120.06754 * 0.02622 * 28 27 26 30 30 H 0.96996 * 120.00564 * 359.97438 * 1 2 3 31 31 H 1.08002 * 125.87581 * 179.97438 * 12 11 10 32 32 H 1.07996 * 120.08046 * 0.02562 * 15 14 13 33 33 H 1.07996 * 119.91762 * 180.23069 * 16 15 14 34 34 H 1.08001 * 119.84348 * 179.71949 * 17 16 15 35 35 H 1.07997 * 120.08133 * 179.97438 * 22 18 17 36 36 H 1.08005 * 120.03061 * 359.97438 * 25 24 23 37 37 H 1.08001 * 119.96780 * 180.31479 * 26 25 24 38 38 H 1.07998 * 119.92997 * 179.70024 * 27 26 25 39 39 H 1.07996 * 119.96318 * 180.02562 * 28 27 26 40 40 H 1.08000 * 120.03086 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2297 1.6178 0.0000 4 1 2.4771 2.0465 -1.4001 5 1 1.4271 2.6527 0.7001 6 1 3.5273 1.4404 0.7001 7 6 2.0274 -1.2671 -0.0006 8 1 3.1075 -1.2669 -0.0010 9 16 1.1715 -2.7497 -0.0084 10 6 2.5213 -3.8822 -0.0144 11 7 3.7959 -3.5565 -0.0122 12 6 4.5407 -4.6618 -0.0177 13 6 3.7038 -5.7415 -0.0231 14 6 4.0992 -7.1646 -0.0297 15 6 3.1271 -8.1623 -0.1336 16 6 3.5038 -9.4890 -0.1440 17 6 4.8404 -9.8329 -0.0411 18 6 5.8081 -8.8499 0.0675 19 7 7.2350 -9.2276 0.1776 20 8 8.1572 -8.2932 0.2816 21 8 7.5824 -10.4979 0.1717 22 6 5.4460 -7.5188 0.0733 23 7 2.4184 -5.2438 -0.0161 24 6 1.2336 -5.9916 -0.0139 25 6 0.9217 -6.7979 1.0727 26 6 -0.2500 -7.5290 1.0746 27 6 -1.1063 -7.4681 -0.0095 28 6 -0.7958 -6.6704 -1.0956 29 6 0.3714 -5.9322 -1.1007 30 1 -0.4851 0.8400 0.0004 31 1 5.6201 -4.6977 -0.0179 32 1 2.0834 -7.8954 -0.2099 33 1 2.7536 -10.2613 -0.2281 34 1 5.1295 -10.8735 -0.0452 35 1 6.2022 -6.7525 0.1585 36 1 1.5927 -6.8499 1.9174 37 1 -0.4956 -8.1524 1.9216 38 1 -2.0197 -8.0445 -0.0078 39 1 -1.4668 -6.6246 -1.9406 40 1 0.6131 -5.3090 -1.9490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044085342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:18 Heat of formation + Delta-G solvation = 132.754018 kcal Electronic energy + Delta-G solvation = -29012.788005 eV Core-core repulsion = 24888.955229 eV Total energy + Delta-G solvation = -4123.832776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.078 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.24745 -41.13939 -40.11229 -39.32530 -35.67838 -35.23918 -34.80523 -33.72558 -32.92110 -32.01127 -30.44747 -29.47125 -27.89125 -27.49458 -24.90293 -24.35458 -23.80846 -23.37598 -22.15296 -21.59632 -20.25871 -19.85636 -19.21527 -18.52101 -17.71021 -17.33052 -17.19020 -16.98229 -16.90853 -16.71125 -15.97651 -15.92831 -15.49180 -15.35579 -14.92384 -14.83274 -14.62877 -14.47691 -14.28457 -14.11098 -13.38659 -13.12904 -13.02011 -12.91262 -12.88037 -12.61246 -12.51486 -12.35006 -12.29323 -12.00768 -11.96963 -11.62617 -11.24099 -11.18679 -10.90725 -10.81923 -10.67005 -10.00291 -9.88626 -9.67346 -8.64601 -8.50146 -6.07388 -1.92700 -0.56496 -0.06339 -0.04175 0.05468 0.31005 0.84384 0.98827 1.33894 1.34264 1.47867 1.83214 1.92706 2.18454 2.37217 2.63839 2.75924 3.04378 3.15905 3.33286 3.56025 3.64883 3.76605 3.82216 3.85684 3.89537 4.07679 4.17846 4.21329 4.40804 4.42012 4.50593 4.54442 4.62976 4.65819 4.78984 4.88960 4.99410 5.18831 5.28878 5.31011 5.35767 5.40395 5.47980 5.50139 5.58915 5.78982 6.17627 6.23912 6.74712 6.95398 8.42584 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.010196 B = 0.003075 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.515317 B = 9104.470992 C =11599.801333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.048 3.952 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.273 1.273 7 C -0.645 4.645 8 H 0.083 0.917 9 S 0.155 5.845 10 C 0.194 3.806 11 N -0.528 5.528 12 C 0.006 3.994 13 C -0.025 4.025 14 C 0.007 3.993 15 C -0.076 4.076 16 C -0.084 4.084 17 C -0.048 4.048 18 C -0.009 4.009 19 N -0.013 5.013 20 O -0.223 6.223 21 O -0.160 6.160 22 C -0.053 4.053 23 N -0.402 5.402 24 C 0.085 3.915 25 C -0.119 4.119 26 C -0.098 4.098 27 C -0.095 4.095 28 C -0.101 4.101 29 C -0.119 4.119 30 H 0.289 0.711 31 H 0.189 0.811 32 H 0.158 0.842 33 H 0.198 0.802 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 -22.790 -0.340 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.167 4.167 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.186 1.186 6 H -0.197 1.197 7 C -0.793 4.793 8 H 0.101 0.899 9 S 0.391 5.609 10 C -0.171 4.171 11 N -0.249 5.249 12 C -0.148 4.148 13 C -0.140 4.140 14 C 0.005 3.995 15 C -0.095 4.095 16 C -0.102 4.102 17 C -0.068 4.068 18 C -0.095 4.095 19 N 0.463 4.537 20 O -0.405 6.405 21 O -0.361 6.361 22 C -0.073 4.073 23 N -0.085 5.085 24 C -0.004 4.004 25 C -0.138 4.138 26 C -0.116 4.116 27 C -0.112 4.112 28 C -0.120 4.120 29 C -0.139 4.139 30 H 0.101 0.899 31 H 0.206 0.794 32 H 0.175 0.825 33 H 0.215 0.785 34 H 0.199 0.801 35 H 0.169 0.831 36 H 0.142 0.858 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.174 0.826 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.590 -21.730 -0.372 22.710 hybrid contribution 2.719 1.282 -0.026 3.006 sum -3.872 -20.448 -0.398 20.815 Atomic orbital electron populations 1.69004 1.08708 1.30834 1.41355 1.27266 0.95262 1.02340 0.91846 0.85090 0.78525 0.75978 0.79235 1.18938 1.18560 1.19731 1.24030 0.96997 0.92240 1.66024 0.89854 1.81731 0.98586 0.93586 1.86965 1.26867 0.99529 0.85387 1.05340 1.70528 1.00907 1.30235 1.23266 1.22913 1.00300 0.87056 1.04544 1.19488 0.83554 0.93422 1.17512 1.17588 0.92041 0.89044 1.00864 1.22594 1.01308 0.93044 0.92560 1.21565 0.94964 0.96316 0.97318 1.21598 0.91543 1.00574 0.93046 1.20322 0.77326 0.95783 1.16110 1.50732 1.05314 1.02458 0.95192 1.96315 1.44862 1.41289 1.58047 1.96223 1.89194 0.96191 1.54466 1.20856 0.96511 0.94513 0.95462 1.42681 1.04738 1.04356 1.56753 1.17988 0.87073 0.97785 0.97561 1.21293 0.99318 0.97483 0.95724 1.21460 0.91713 0.98472 0.99991 1.21767 1.00207 0.97257 0.92016 1.21423 0.94810 0.95158 1.00574 1.21318 0.95798 0.99951 0.96825 0.89938 0.79375 0.82508 0.78513 0.80129 0.83125 0.85826 0.81453 0.81238 0.82588 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.55 13.25 23.16 0.31 -47.24 16 2 C 0.05 2.60 5.68 87.12 0.49 3.10 16 3 Si 0.99 43.30 29.64 68.60 2.03 45.34 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.65 -37.53 9.48 69.92 0.66 -36.87 16 8 H 0.08 5.12 6.88 -2.91 -0.02 5.10 16 9 S 0.15 7.95 21.24 -56.49 -1.20 6.75 16 10 C 0.19 9.08 7.86 179.46 1.41 10.49 16 11 N -0.53 -25.70 9.89 -195.06 -1.93 -27.62 16 12 C 0.01 0.22 11.27 84.09 0.95 1.16 16 13 C -0.02 -0.83 6.80 40.32 0.27 -0.56 16 14 C 0.01 0.18 5.87 -20.09 -0.12 0.07 16 15 C -0.08 -1.38 8.66 22.54 0.20 -1.18 16 16 C -0.08 -0.91 10.03 22.23 0.22 -0.68 16 17 C -0.05 -0.67 9.57 22.34 0.21 -0.46 16 18 C -0.01 -0.20 6.88 36.34 0.25 0.05 16 19 N -0.01 -0.35 4.98 -46.56 -0.23 -0.58 16 20 O -0.22 -7.08 19.14 3.52 0.07 -7.01 16 21 O -0.16 -4.24 19.14 3.52 0.07 -4.18 16 22 C -0.05 -1.28 9.11 22.54 0.21 -1.07 16 23 N -0.40 -14.83 2.84 -334.04 -0.95 -15.77 16 24 C 0.09 2.47 3.64 38.11 0.14 2.60 16 25 C -0.12 -2.58 7.16 22.39 0.16 -2.42 16 26 C -0.10 -1.32 10.04 22.25 0.22 -1.10 16 27 C -0.09 -1.13 10.04 22.29 0.22 -0.91 16 28 C -0.10 -1.74 10.04 22.25 0.22 -1.52 16 29 C -0.12 -3.14 9.75 22.39 0.22 -2.92 16 30 H 0.29 14.37 8.27 -92.71 -0.77 13.60 16 31 H 0.19 6.10 7.33 -2.91 -0.02 6.08 16 32 H 0.16 2.81 3.72 -2.91 -0.01 2.79 16 33 H 0.20 0.37 8.06 -2.91 -0.02 0.35 16 34 H 0.18 1.65 7.56 -2.91 -0.02 1.63 16 35 H 0.15 3.79 6.58 -2.91 -0.02 3.77 16 36 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -76.44 372.02 5.23 -71.20 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.12 Total: 11.34 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 5.95 Total: -32.22 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -2.80 Total: -91.22 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.13 Total: -11.19 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -1.20 Total: 6.75 kcal Total: -76.44 5.23 -71.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.958 kcal (2) G-P(sol) polarization free energy of solvation -76.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds