Wall clock time and date at job start Tue Mar 31 2020 05:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 116.99778 * 2 1 4 4 C 1.38869 * 119.90442 * 179.97438 * 3 2 1 5 5 C 1.37846 * 120.09483 * 180.02562 * 4 3 2 6 6 C 1.39663 * 119.90613 * 359.97438 * 5 4 3 7 7 C 1.47727 * 120.09596 * 180.02562 * 6 5 4 8 8 C 1.36264 * 126.68221 * 14.71014 * 7 6 5 9 9 N 1.33570 * 108.23975 * 180.02562 * 8 7 6 10 10 C 1.31546 * 109.61261 * 0.02562 * 9 8 7 11 11 S 1.76197 * 125.67863 * 179.97438 * 10 9 8 12 12 C 1.76196 * 99.99927 * 0.02595 * 11 10 9 13 13 H 1.08008 * 120.00085 * 359.97438 * 12 11 10 14 14 C 1.38560 * 120.00313 * 179.73138 * 12 11 10 15 15 N 1.31695 * 119.99586 * 0.26537 * 14 12 11 16 16 Si 1.86793 * 120.00256 * 180.27420 * 14 12 11 17 17 H 1.48496 * 109.47506 * 59.99644 * 16 14 12 18 18 H 1.48506 * 109.47201 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47369 * 299.99202 * 16 14 12 20 20 N 1.36380 * 108.64891 * 0.24411 * 10 9 8 21 21 C 1.46503 * 126.57039 * 179.75893 * 20 10 9 22 22 C 1.50699 * 109.47391 * 83.29303 * 21 20 10 23 23 C 1.38234 * 119.99943 * 294.94492 * 22 21 20 24 24 C 1.38235 * 119.99708 * 179.77117 * 23 22 21 25 25 C 1.38234 * 120.00114 * 0.49436 * 24 23 22 26 26 C 1.38244 * 119.99875 * 359.75472 * 25 24 23 27 27 C 1.38232 * 119.99685 * 115.21314 * 22 21 20 28 28 C 1.39667 * 119.80835 * 0.27579 * 6 5 4 29 29 C 1.37850 * 119.90520 * 359.45047 * 28 6 5 30 30 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47016 * 299.99895 * 1 2 3 32 32 H 1.08998 * 109.47186 * 60.00176 * 1 2 3 33 33 H 1.07998 * 119.95231 * 0.02562 * 4 3 2 34 34 H 1.08008 * 120.04400 * 179.97438 * 5 4 3 35 35 H 1.08003 * 125.88334 * 0.02562 * 8 7 6 36 36 H 0.97000 * 119.99925 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.47253 * 203.30120 * 21 20 10 38 38 H 1.09001 * 109.46592 * 323.29361 * 21 20 10 39 39 H 1.07995 * 120.00122 * 359.97438 * 23 22 21 40 40 H 1.08003 * 120.00180 * 180.22931 * 24 23 22 41 41 H 1.08003 * 120.00194 * 179.72999 * 25 24 23 42 42 H 1.07998 * 119.99560 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.00368 * 0.02562 * 27 22 21 44 44 H 1.08005 * 120.04635 * 179.71610 * 28 6 5 45 45 H 1.07995 * 119.95336 * 180.27593 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4328 1.2813 0.0005 5 6 4.0627 2.5074 0.0011 6 6 3.3039 3.6800 0.0005 7 6 3.9746 4.9963 0.0005 8 6 5.2860 5.2417 -0.2765 9 7 5.4971 6.5562 -0.1688 10 6 4.3760 7.1575 0.1655 11 16 4.1751 8.8894 0.4201 12 6 5.8187 9.4382 0.1008 13 1 6.5846 8.7242 -0.1639 14 6 6.1275 10.7864 0.1842 15 7 5.1936 11.6570 0.5073 16 14 7.8681 11.3691 -0.1619 17 1 8.2474 10.9994 -1.5492 18 1 7.9362 12.8445 -0.0071 19 1 8.8046 10.7269 0.7951 20 7 3.3962 6.2168 0.2880 21 6 1.9972 6.4557 0.6512 22 6 1.2221 6.8623 -0.5756 23 6 1.5161 8.0514 -1.2163 24 6 0.8083 8.4220 -2.3444 25 6 -0.2003 7.6085 -2.8258 26 6 -0.4977 6.4218 -2.1821 27 6 0.2135 6.0487 -1.0570 28 6 1.9093 3.6045 0.0053 29 6 1.2876 2.3742 -0.0010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0188 0.3741 0.0005 34 1 5.1414 2.5612 0.0019 35 1 6.0271 4.5009 -0.5381 36 1 5.4096 12.6008 0.5653 37 1 1.5686 5.5434 1.0660 38 1 1.9455 7.2518 1.3939 39 1 2.3009 8.6892 -0.8375 40 1 1.0404 9.3493 -2.8471 41 1 -0.7562 7.9001 -3.7047 42 1 -1.2860 5.7864 -2.5580 43 1 -0.0193 5.1220 -0.5537 44 1 1.3188 4.5088 0.0095 45 1 0.2093 2.3150 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044085442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:37 Heat of formation + Delta-G solvation = 82.539342 kcal Electronic energy + Delta-G solvation = -29652.429274 eV Core-core repulsion = 25727.678032 eV Total energy + Delta-G solvation = -3924.751242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36701 -40.01168 -39.05691 -37.41394 -34.43606 -32.61333 -31.52000 -31.30359 -30.76237 -30.47287 -28.10696 -26.98594 -26.17772 -25.58319 -23.28410 -22.58755 -22.26855 -21.45571 -20.59689 -19.86555 -18.28960 -17.99392 -16.95297 -16.69390 -16.18076 -15.91024 -15.66503 -15.37795 -14.91613 -14.87254 -14.67079 -14.40409 -14.07361 -13.85732 -13.54506 -13.18493 -13.18113 -12.97143 -12.92276 -12.73988 -12.69213 -12.27258 -12.00082 -11.75485 -11.33692 -11.29447 -11.19920 -11.09339 -11.03507 -10.93500 -10.55034 -10.16920 -9.49520 -9.24600 -9.13595 -9.08025 -8.89746 -8.83145 -8.77120 -8.67380 -7.75517 -6.45766 -6.42558 -4.14746 1.08235 1.28741 1.34185 1.53592 2.63404 2.63943 3.11540 3.23575 3.24409 3.30290 3.44587 3.65348 3.96435 4.01836 4.04482 4.59248 4.70200 4.75029 4.76349 4.83126 4.87996 4.88929 4.99776 5.02252 5.03967 5.09974 5.18454 5.29271 5.33077 5.36627 5.48895 5.55873 5.60005 5.66847 5.79286 5.89229 6.04664 6.07826 6.16512 6.21734 6.24730 6.45447 6.51257 6.65411 6.69873 6.72800 6.95698 7.12508 7.25149 7.30414 7.53727 7.62700 8.42775 8.71654 9.10128 10.65772 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.003076 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.776553 B = 9099.386965 C =11085.241990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.108 3.892 4 C -0.140 4.140 5 C -0.075 4.075 6 C -0.013 4.013 7 C -0.025 4.025 8 C 0.013 3.987 9 N -0.490 5.490 10 C 0.213 3.787 11 S 0.115 5.885 12 C -0.526 4.526 13 H 0.105 0.895 14 C 0.073 3.927 15 N -0.881 5.881 16 Si 0.931 3.069 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.270 1.270 20 N -0.448 5.448 21 C 0.137 3.863 22 C -0.113 4.113 23 C -0.098 4.098 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.128 4.128 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.196 4.196 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.273 0.727 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.153 0.847 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.142 0.858 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 -16.398 -1.922 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.063 3.937 4 C -0.158 4.158 5 C -0.094 4.094 6 C -0.015 4.015 7 C -0.140 4.140 8 C -0.141 4.141 9 N -0.211 5.211 10 C -0.153 4.153 11 S 0.351 5.649 12 C -0.674 4.674 13 H 0.123 0.877 14 C -0.135 4.135 15 N -0.517 5.517 16 Si 0.756 3.244 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.196 1.196 20 N -0.135 5.135 21 C 0.015 3.985 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.134 4.134 25 C -0.134 4.134 26 C -0.146 4.146 27 C -0.133 4.133 28 C -0.136 4.136 29 C -0.215 4.215 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.170 0.830 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.159 0.841 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.628 -15.222 -1.633 20.496 hybrid contribution 0.957 -0.671 -0.514 1.277 sum -12.671 -15.893 -2.147 20.439 Atomic orbital electron populations 1.23020 0.78705 1.03689 1.01313 1.86044 1.21130 1.27157 1.89057 1.19049 0.92347 0.83931 0.98348 1.20284 0.91203 0.98357 1.05979 1.20914 1.00002 0.90111 0.98340 1.17845 0.92220 0.90063 1.01375 1.19331 0.94169 0.84783 1.15727 1.22306 0.93043 0.93885 1.04834 1.70689 1.23869 1.05184 1.21341 1.26811 0.85008 1.00127 1.03351 1.83107 1.17626 0.82091 1.82086 1.23166 0.94670 0.95586 1.53996 0.87713 1.25042 0.99241 0.95268 0.93971 1.69968 1.33265 1.03058 1.45396 0.86005 0.81812 0.77099 0.79438 1.19579 1.20901 1.19560 1.45370 1.08177 1.05653 1.54318 1.20887 0.78859 1.03475 0.95320 1.20030 0.97391 0.96033 0.97928 1.22059 0.98744 0.96063 0.94817 1.21257 0.95713 0.99978 0.96480 1.21200 0.97806 0.94804 0.99637 1.20998 1.00226 0.97170 0.96204 1.21051 0.96386 0.98761 0.97107 1.21801 0.94337 0.98085 0.99346 1.21067 0.99706 0.92120 1.08620 0.88447 0.92744 0.92745 0.85097 0.84801 0.82029 0.91746 0.87983 0.87745 0.83029 0.85646 0.86270 0.86299 0.86115 0.84071 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.46 10.49 -19.40 -0.20 -3.66 16 3 C 0.11 1.29 6.69 -39.11 -0.26 1.03 16 4 C -0.14 -1.66 9.97 -39.49 -0.39 -2.05 16 5 C -0.07 -0.96 9.57 -39.19 -0.38 -1.34 16 6 C -0.01 -0.20 5.87 -104.95 -0.62 -0.81 16 7 C -0.02 -0.45 6.80 -81.88 -0.56 -1.01 16 8 C 0.01 0.25 11.25 -17.51 -0.20 0.06 16 9 N -0.49 -11.55 9.96 -13.07 -0.13 -11.68 16 10 C 0.21 4.84 7.59 -88.27 -0.67 4.17 16 11 S 0.12 2.81 18.36 -107.50 -1.97 0.84 16 12 C -0.53 -14.56 9.35 30.85 0.29 -14.27 16 13 H 0.10 2.99 6.88 -52.48 -0.36 2.63 16 14 C 0.07 1.98 5.49 -17.49 -0.10 1.89 16 15 N -0.88 -24.40 13.22 55.48 0.73 -23.67 16 16 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 N -0.45 -8.46 2.78 -113.97 -0.32 -8.78 16 21 C 0.14 2.11 5.38 -5.19 -0.03 2.08 16 22 C -0.11 -1.70 5.42 -104.63 -0.57 -2.27 16 23 C -0.10 -1.64 9.38 -39.58 -0.37 -2.01 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.13 -1.51 10.05 -39.58 -0.40 -1.90 16 27 C -0.11 -1.45 8.84 -39.59 -0.35 -1.80 16 28 C -0.12 -1.55 8.70 -39.19 -0.34 -1.89 16 29 C -0.20 -2.23 9.02 -39.49 -0.36 -2.59 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 1.51 7.23 -52.48 -0.38 1.13 16 35 H 0.16 2.60 7.50 -52.48 -0.39 2.21 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.10 1.32 5.17 -51.93 -0.27 1.05 16 38 H 0.10 1.58 7.96 -51.93 -0.41 1.17 16 39 H 0.15 2.93 4.53 -42.84 -0.19 2.74 16 40 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.25 6.04 -52.49 -0.32 0.94 16 44 H 0.14 1.76 1.12 -52.48 -0.06 1.70 16 45 H 0.13 1.09 6.28 -52.49 -0.33 0.76 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -32.24 381.65 -11.01 -43.25 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.76 Total: 7.21 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -5.09 Total: -25.49 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.29 Total: -44.13 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.20 Total: -3.66 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.97 Total: 0.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.24 -11.01 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.793 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds