Wall clock time and date at job start Tue Mar 31 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 117.00313 * 2 1 4 4 C 1.38870 * 119.90703 * 179.97438 * 3 2 1 5 5 C 1.37842 * 120.09489 * 179.97438 * 4 3 2 6 6 C 1.39670 * 119.90736 * 0.02562 * 5 4 3 7 7 C 1.47708 * 120.10188 * 179.97438 * 6 5 4 8 8 C 1.36285 * 126.68171 * 4.97881 * 7 6 5 9 9 N 1.33580 * 108.29727 * 179.97438 * 8 7 6 10 10 C 1.31566 * 109.65310 * 359.97438 * 9 8 7 11 11 S 1.76204 * 125.68831 * 180.02562 * 10 9 8 12 12 C 1.76198 * 99.99829 * 0.02562 * 11 10 9 13 13 H 1.07999 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.38565 * 119.99712 * 179.97438 * 12 11 10 15 15 N 1.31692 * 120.00056 * 359.72882 * 14 12 11 16 16 Si 1.86800 * 120.00242 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46757 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.47323 * 120.00033 * 16 14 12 19 19 H 1.48501 * 109.47344 * 240.00358 * 16 14 12 20 20 N 1.36636 * 108.62035 * 0.26660 * 10 9 8 21 21 C 1.40105 * 126.60156 * 179.73933 * 20 10 9 22 22 C 1.38875 * 120.07293 * 90.01843 * 21 20 10 23 23 C 1.38089 * 119.93673 * 179.97438 * 22 21 20 24 24 C 1.38307 * 120.06609 * 0.02562 * 23 22 21 25 25 C 1.38267 * 120.13643 * 359.97438 * 24 23 22 26 26 C 1.38140 * 120.06400 * 359.74267 * 25 24 23 27 27 C 1.50701 * 120.03065 * 180.25231 * 26 25 24 28 28 C 1.39687 * 119.80542 * 0.24777 * 6 5 4 29 29 C 1.37846 * 119.89907 * 359.49790 * 28 6 5 30 30 H 1.09003 * 109.46627 * 60.00186 * 1 2 3 31 31 H 1.08997 * 109.46737 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47241 * 300.00318 * 1 2 3 33 33 H 1.07997 * 119.94751 * 359.95421 * 4 3 2 34 34 H 1.08001 * 120.04728 * 180.02562 * 5 4 3 35 35 H 1.08003 * 125.85644 * 0.02562 * 8 7 6 36 36 H 0.97000 * 120.00288 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.02981 * 359.97438 * 22 21 20 38 38 H 1.07990 * 119.96788 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.93362 * 180.02562 * 24 23 22 40 40 H 1.07999 * 119.96680 * 180.02562 * 25 24 23 41 41 H 1.09004 * 109.46764 * 270.28328 * 27 26 25 42 42 H 1.08999 * 109.46931 * 30.27900 * 27 26 25 43 43 H 1.08999 * 109.47283 * 150.28665 * 27 26 25 44 44 H 1.08002 * 120.04925 * 179.72866 * 28 6 5 45 45 H 1.07998 * 119.94813 * 180.27730 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4329 1.2812 0.0005 5 6 4.0628 2.5073 0.0000 6 6 3.3041 3.6800 -0.0005 7 6 3.9746 4.9961 -0.0005 8 6 5.3144 5.2272 -0.0949 9 7 5.5158 6.5473 -0.0591 10 6 4.3613 7.1681 0.0536 11 16 4.1369 8.9137 0.1379 12 6 5.8138 9.4434 0.0285 13 1 6.6057 8.7145 -0.0603 14 6 6.1165 10.7953 0.0565 15 7 5.1504 11.6844 0.1594 16 14 7.8942 11.3571 -0.0602 17 1 8.7813 10.1716 -0.1749 18 1 8.0634 12.2190 -1.2575 19 1 8.2511 12.1270 1.1584 20 7 3.3659 6.2332 0.0997 21 6 1.9923 6.4809 0.2218 22 6 1.2118 6.6490 -0.9145 23 6 -0.1418 6.8924 -0.7909 24 6 -0.7204 6.9694 0.4630 25 6 0.0540 6.8024 1.5963 26 6 1.4076 6.5528 1.4789 27 6 2.2499 6.3653 2.7144 28 6 1.9093 3.6045 0.0047 29 6 1.2877 2.3742 -0.0001 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 4.0188 0.3739 0.0017 34 1 5.1415 2.5611 0.0000 35 1 6.0818 4.4725 -0.1842 36 1 5.3623 12.6308 0.1786 37 1 1.6631 6.5895 -1.8939 38 1 -0.7492 7.0237 -1.6741 39 1 -1.7793 7.1594 0.5572 40 1 -0.4006 6.8626 2.5740 41 1 2.6372 7.3308 3.0400 42 1 1.6403 5.9322 3.5074 43 1 3.0814 5.6975 2.4893 44 1 1.3188 4.5088 0.0087 45 1 0.2094 2.3149 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044086719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:45 Heat of formation + Delta-G solvation = 74.173240 kcal Electronic energy + Delta-G solvation = -29946.882570 eV Core-core repulsion = 26021.768547 eV Total energy + Delta-G solvation = -3925.114023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61074 -39.98416 -39.08720 -37.35058 -33.81705 -32.61683 -32.53570 -31.38410 -31.07673 -29.37230 -28.07585 -26.95646 -26.77235 -25.57003 -23.25958 -22.78533 -22.39648 -21.60097 -20.49856 -19.89871 -18.43713 -18.16730 -17.16896 -16.15789 -15.94323 -15.89436 -15.84705 -15.40407 -14.88548 -14.72952 -14.42502 -14.02096 -13.92247 -13.86644 -13.56127 -13.32885 -13.20475 -13.11373 -12.93811 -12.75410 -12.35374 -12.27073 -11.95702 -11.81983 -11.34727 -11.34065 -11.22291 -11.13579 -11.11686 -10.97798 -10.82613 -10.12625 -9.54731 -9.44468 -9.19930 -9.04644 -8.87349 -8.81064 -8.80223 -8.56236 -7.74317 -6.43965 -6.40926 -4.12093 1.10102 1.14867 1.30672 1.37351 2.60645 2.63734 3.14983 3.19802 3.25696 3.35175 3.45385 3.62865 3.65592 4.04553 4.06706 4.71394 4.80254 4.81052 4.83143 4.83754 4.91948 4.94780 5.00438 5.02560 5.14620 5.21221 5.24534 5.33339 5.39727 5.44373 5.54672 5.59725 5.68639 5.75270 5.81520 5.89651 5.92167 6.09489 6.20740 6.25040 6.30928 6.35054 6.41833 6.45472 6.53265 6.69599 6.80844 6.93346 7.25653 7.30472 7.63602 7.71677 8.44292 8.68508 9.11492 10.67557 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003077 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.533455 B = 9098.398214 C =10648.345359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.108 3.892 4 C -0.142 4.142 5 C -0.076 4.076 6 C -0.017 4.017 7 C -0.024 4.024 8 C 0.018 3.982 9 N -0.492 5.492 10 C 0.226 3.774 11 S 0.124 5.876 12 C -0.525 4.525 13 H 0.106 0.894 14 C 0.072 3.928 15 N -0.880 5.880 16 Si 0.930 3.070 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.279 1.279 20 N -0.418 5.418 21 C 0.129 3.871 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.061 4.061 27 C -0.119 4.119 28 C -0.096 4.096 29 C -0.196 4.196 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.165 0.835 36 H 0.272 0.728 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.456 -17.234 1.218 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.063 3.937 4 C -0.160 4.160 5 C -0.095 4.095 6 C -0.019 4.019 7 C -0.137 4.137 8 C -0.135 4.135 9 N -0.213 5.213 10 C -0.139 4.139 11 S 0.360 5.640 12 C -0.674 4.674 13 H 0.124 0.876 14 C -0.136 4.136 15 N -0.516 5.516 16 Si 0.755 3.245 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.205 1.205 20 N -0.104 5.104 21 C 0.039 3.961 22 C -0.118 4.118 23 C -0.138 4.138 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.062 4.062 27 C -0.176 4.176 28 C -0.115 4.115 29 C -0.214 4.214 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.182 0.818 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.149 0.851 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.718 -16.047 1.299 21.151 hybrid contribution 1.051 -0.534 -0.240 1.203 sum -12.667 -16.581 1.059 20.893 Atomic orbital electron populations 1.23010 0.78745 1.03609 1.01318 1.86036 1.21100 1.27196 1.89089 1.19053 0.92339 0.83902 0.98419 1.20251 0.91167 0.98299 1.06310 1.20871 0.99891 0.90107 0.98622 1.17836 0.92274 0.89920 1.01828 1.19366 0.92652 0.83909 1.17789 1.22333 0.92526 0.93898 1.04741 1.70740 1.23233 1.04560 1.22771 1.27101 0.83544 1.00311 1.02965 1.83610 1.14048 0.80398 1.85989 1.23239 0.91850 0.95026 1.57274 0.87648 1.25059 0.99471 0.95236 0.93866 1.69997 1.32196 1.02096 1.47280 0.85914 0.81952 0.78747 0.77844 1.18948 1.20496 1.20486 1.42653 1.03699 1.05280 1.58752 1.17317 0.81855 1.03673 0.93252 1.21309 0.93992 0.98403 0.98104 1.20995 0.94086 1.00827 0.97913 1.21210 1.00000 0.98994 0.92354 1.20943 0.92494 1.00913 0.99116 1.20082 0.94495 0.97461 0.94203 1.20816 0.99280 1.03351 0.94117 1.21425 0.94032 0.97749 0.98252 1.21065 0.99683 0.92084 1.08607 0.92775 0.88474 0.92784 0.85152 0.84871 0.81815 0.91875 0.85373 0.85318 0.85571 0.85322 0.89919 0.91420 0.91259 0.85148 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.59 10.49 -19.42 -0.20 -3.80 16 3 C 0.11 1.34 6.69 -39.11 -0.26 1.08 16 4 C -0.14 -1.72 9.97 -39.49 -0.39 -2.12 16 5 C -0.08 -0.99 9.57 -39.19 -0.38 -1.37 16 6 C -0.02 -0.25 5.87 -104.95 -0.62 -0.87 16 7 C -0.02 -0.43 6.35 -81.81 -0.52 -0.95 16 8 C 0.02 0.35 11.26 -17.49 -0.20 0.15 16 9 N -0.49 -11.58 9.96 -12.99 -0.13 -11.71 16 10 C 0.23 5.22 7.93 -88.01 -0.70 4.52 16 11 S 0.12 3.17 21.48 -107.50 -2.31 0.86 16 12 C -0.53 -14.82 9.36 30.85 0.29 -14.53 16 13 H 0.11 3.05 6.88 -52.49 -0.36 2.69 16 14 C 0.07 1.99 5.49 -17.49 -0.10 1.89 16 15 N -0.88 -24.97 13.22 55.48 0.73 -24.24 16 16 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 N -0.42 -8.08 1.92 -56.88 -0.11 -8.19 16 21 C 0.13 2.17 3.06 -83.62 -0.26 1.91 16 22 C -0.10 -1.48 8.89 -39.40 -0.35 -1.83 16 23 C -0.12 -1.43 10.04 -39.61 -0.40 -1.82 16 24 C -0.11 -1.17 10.04 -39.55 -0.40 -1.57 16 25 C -0.12 -1.41 9.70 -39.61 -0.38 -1.79 16 26 C -0.06 -0.92 5.45 -104.44 -0.57 -1.48 16 27 C -0.12 -1.76 9.77 36.01 0.35 -1.41 16 28 C -0.10 -1.37 9.38 -39.18 -0.37 -1.74 16 29 C -0.20 -2.41 9.02 -39.49 -0.36 -2.77 16 30 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.50 7.06 -52.49 -0.37 1.13 16 35 H 0.16 2.58 7.31 -52.48 -0.38 2.19 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.13 1.96 8.06 -52.48 -0.42 1.53 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.07 1.16 7.03 -51.93 -0.37 0.79 16 44 H 0.13 1.89 3.80 -52.49 -0.20 1.69 16 45 H 0.12 1.24 6.28 -52.49 -0.33 0.92 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -32.57 392.22 -11.05 -43.63 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.32 Total: 4.60 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -4.60 Total: -23.50 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.49 Total: -44.14 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.20 Total: -3.80 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.31 Total: 0.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.57 -11.05 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044086719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.799 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds