Wall clock time and date at job start Tue Mar 31 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47170 * 300.69931 * 3 2 1 5 5 C 1.53007 * 109.47100 * 179.97438 * 4 3 2 6 6 C 1.53010 * 109.47060 * 304.94781 * 5 4 3 7 7 C 1.50697 * 109.46730 * 299.99945 * 6 5 4 8 8 H 1.08001 * 120.00526 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99588 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00399 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99981 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47209 * 59.99474 * 11 9 7 13 13 H 1.48493 * 109.47433 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46772 * 299.99554 * 11 9 7 15 15 C 1.50698 * 109.46970 * 64.94186 * 5 4 3 16 16 O 1.21265 * 120.00476 * 245.87892 * 15 5 4 17 17 C 1.47078 * 119.99803 * 65.87879 * 15 5 4 18 18 C 1.39906 * 120.18117 * 355.29957 * 17 15 5 19 19 C 1.37821 * 119.83624 * 180.02562 * 18 17 15 20 20 C 1.38470 * 120.21549 * 359.97438 * 19 18 17 21 21 C 1.38309 * 120.37072 * 0.02562 * 20 19 18 22 22 C 1.38095 * 120.15968 * 359.97438 * 21 20 19 23 23 Cl 1.73595 * 120.11006 * 180.02562 * 22 21 20 24 24 C 1.50693 * 109.47308 * 184.94611 * 5 4 3 25 25 C 1.38235 * 120.00004 * 359.72563 * 24 5 4 26 26 C 1.38231 * 119.99884 * 179.76490 * 25 24 5 27 27 C 1.38241 * 120.00045 * 0.50732 * 26 25 24 28 28 C 1.38231 * 119.99739 * 359.74893 * 27 26 25 29 29 C 1.38228 * 120.00354 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47053 * 180.69795 * 3 2 1 31 31 H 1.09006 * 109.46787 * 60.70382 * 3 2 1 32 32 H 1.08996 * 109.46870 * 60.00618 * 4 3 2 33 33 H 1.08996 * 109.47616 * 300.00028 * 4 3 2 34 34 H 1.09004 * 109.46763 * 59.99787 * 6 5 4 35 35 H 1.08992 * 109.46987 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00382 * 180.02562 * 10 9 7 37 37 H 1.08001 * 120.08806 * 359.97438 * 18 17 15 38 38 H 1.08003 * 119.89247 * 179.72556 * 19 18 17 39 39 H 1.07996 * 119.81678 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.91584 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99804 * 0.02562 * 25 24 5 42 42 H 1.08000 * 120.00146 * 180.23240 * 26 25 24 43 43 H 1.08002 * 119.99551 * 179.71936 * 27 26 25 44 44 H 1.08004 * 119.99539 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00520 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7355 1.2403 5 6 4.6484 -0.7354 1.2399 6 6 5.1582 -1.3304 -0.0743 7 6 4.6559 -2.7443 -0.2137 8 1 4.0356 -3.1757 0.5580 9 6 4.9893 -3.4878 -1.3260 10 7 5.7451 -2.9628 -2.2656 11 14 4.3661 -5.2402 -1.4993 12 1 2.8811 -5.2398 -1.4998 13 1 4.8609 -5.8178 -2.7747 14 1 4.8605 -6.0561 -0.3611 15 6 5.1506 0.6786 1.3793 16 8 5.7571 1.1994 0.4674 17 6 4.9052 1.4271 2.6213 18 6 4.1225 0.8672 3.6369 19 6 3.8966 1.5751 4.7977 20 6 4.4420 2.8373 4.9615 21 6 5.2170 3.3992 3.9632 22 6 5.4532 2.7035 2.7938 23 17 6.4267 3.4096 1.5419 24 6 5.1511 -1.5631 2.3945 25 6 4.2531 -2.1707 3.2520 26 6 4.7142 -2.9340 4.3082 27 6 6.0734 -3.0811 4.5131 28 6 6.9714 -2.4691 3.6588 29 6 6.5103 -1.7105 2.5992 30 1 2.9709 1.0284 0.0125 31 1 2.9716 -0.5021 -0.8963 32 1 2.7556 -1.7633 1.2277 33 1 2.7549 -0.2328 2.1365 34 1 4.7945 -0.7316 -0.9094 35 1 6.2481 -1.3299 -0.0747 36 1 5.9793 -3.4857 -3.0483 37 1 3.6957 -0.1169 3.5114 38 1 3.2890 1.1456 5.5805 39 1 4.2605 3.3865 5.8735 40 1 5.6384 4.3843 4.0985 41 1 3.1912 -2.0525 3.0942 42 1 4.0127 -3.4118 4.9759 43 1 6.4336 -3.6737 5.3411 44 1 8.0333 -2.5837 3.8191 45 1 7.2119 -1.2321 1.9319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044125560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:33 Heat of formation + Delta-G solvation = 44.544671 kcal Electronic energy + Delta-G solvation = -31410.524918 eV Core-core repulsion = 27384.363735 eV Total energy + Delta-G solvation = -4026.161183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85989 -38.86608 -38.04276 -36.70066 -36.31886 -35.29704 -32.70565 -31.52627 -31.07568 -30.82421 -30.45000 -28.53975 -26.45521 -24.57364 -23.70295 -22.65940 -22.01995 -21.62243 -21.00125 -18.54952 -17.78102 -16.98566 -16.61264 -16.22457 -15.70353 -15.67785 -15.05023 -14.83914 -14.67854 -14.40719 -14.30569 -14.22597 -13.92871 -13.76970 -13.35660 -13.23605 -12.96205 -12.62327 -12.42859 -12.26623 -12.23101 -12.02535 -11.97154 -11.57185 -11.46902 -11.41991 -11.19989 -11.03906 -11.00225 -10.78400 -10.71905 -10.65814 -10.31113 -10.07145 -9.66069 -9.26672 -9.12884 -8.96366 -8.82471 -8.49497 -8.39840 -8.07602 -6.04387 -4.07061 0.59726 1.08982 1.76154 1.81367 2.17011 2.58377 3.05812 3.11502 3.30927 3.36468 3.38587 3.63540 4.05702 4.28739 4.30648 4.45345 4.62397 4.78300 4.98971 5.04018 5.18048 5.19355 5.30735 5.32400 5.33097 5.39288 5.44240 5.50054 5.56543 5.64317 5.73672 5.87337 5.90123 6.00581 6.04191 6.07863 6.21634 6.26520 6.33478 6.41854 6.49080 6.58784 6.66401 6.82597 6.88633 7.04563 7.38222 7.57793 7.61560 7.84317 7.87275 7.93232 8.29517 8.97099 9.57274 11.05990 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.008621 B = 0.004401 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.246786 B = 6361.254051 C = 7010.578482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.223 3.777 3 C -0.037 4.037 4 C -0.098 4.098 5 C -0.054 4.054 6 C 0.047 3.953 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.888 5.888 11 Si 0.883 3.117 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.395 3.605 16 O -0.413 6.413 17 C -0.150 4.150 18 C -0.067 4.067 19 C -0.132 4.132 20 C -0.085 4.085 21 C -0.131 4.131 22 C 0.008 3.992 23 Cl -0.039 7.039 24 C -0.022 4.022 25 C -0.130 4.130 26 C -0.119 4.119 27 C -0.134 4.134 28 C -0.115 4.115 29 C -0.103 4.103 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.261 0.739 37 H 0.154 0.846 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 9.117 16.195 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.094 4.094 3 C -0.077 4.077 4 C -0.137 4.137 5 C -0.055 4.055 6 C 0.010 3.990 7 C -0.554 4.554 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.526 5.526 11 Si 0.711 3.289 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.269 3.731 16 O -0.284 6.284 17 C -0.152 4.152 18 C -0.085 4.085 19 C -0.150 4.150 20 C -0.103 4.103 21 C -0.149 4.149 22 C -0.019 4.019 23 Cl -0.009 7.009 24 C -0.023 4.023 25 C -0.148 4.148 26 C -0.137 4.137 27 C -0.152 4.152 28 C -0.133 4.133 29 C -0.121 4.121 30 H 0.115 0.885 31 H 0.154 0.846 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.171 0.829 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.240 9.437 15.379 18.086 hybrid contribution 0.337 -1.126 -0.204 1.193 sum -0.903 8.311 15.175 17.326 Atomic orbital electron populations 1.81141 1.13139 1.09810 1.09622 1.29363 0.95344 0.92286 0.92418 1.19561 0.80994 1.03408 1.03710 1.21733 0.93556 1.02795 0.95588 1.20271 0.95193 0.90780 0.99280 1.19166 0.97212 0.95405 0.87233 1.21046 1.31924 0.97562 1.04894 0.92256 1.24908 0.95072 0.97757 0.95981 1.69944 1.36330 1.36964 1.09411 0.86799 0.79251 0.85514 0.77358 1.20255 1.21418 1.20273 1.22568 0.76905 0.88916 0.84727 1.90608 1.29018 1.69256 1.39546 1.20615 1.01751 0.94396 0.98443 1.22081 0.94487 1.00353 0.91603 1.21240 1.00797 0.94961 0.98013 1.21305 0.95408 0.95314 0.98270 1.21027 1.00748 1.00685 0.92475 1.21298 0.95759 0.93537 0.91330 1.98416 1.68223 1.82783 1.51508 1.19325 0.93323 0.96479 0.93124 1.21058 0.99507 0.98871 0.95366 1.20980 0.95472 0.99145 0.98115 1.20978 0.93522 1.00797 0.99899 1.21020 0.99231 0.97689 0.95338 1.20952 0.95243 0.98875 0.96990 0.88534 0.84610 0.88247 0.91834 0.94629 0.95408 0.92878 0.82869 0.85058 0.85068 0.84782 0.85819 0.86684 0.86926 0.86696 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.13 18.54 42.16 0.78 -7.35 16 2 C 0.22 3.52 15.43 -20.76 -0.32 3.20 16 3 C -0.04 -0.55 5.03 -29.52 -0.15 -0.70 16 4 C -0.10 -1.45 2.42 -26.73 -0.06 -1.51 16 5 C -0.05 -0.92 0.14 -156.81 -0.02 -0.94 16 6 C 0.05 1.02 2.69 -27.88 -0.07 0.95 16 7 C -0.52 -12.42 7.85 -34.44 -0.27 -12.69 16 8 H 0.06 1.38 6.35 -52.49 -0.33 1.05 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16 11 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.39 6.52 4.55 -30.73 -0.14 6.38 16 16 O -0.41 -7.86 13.63 5.57 0.08 -7.78 16 17 C -0.15 -2.11 5.70 -105.04 -0.60 -2.71 16 18 C -0.07 -0.80 7.71 -39.11 -0.30 -1.10 16 19 C -0.13 -1.25 10.03 -39.65 -0.40 -1.65 16 20 C -0.08 -0.75 10.04 -39.47 -0.40 -1.14 16 21 C -0.13 -1.35 9.82 -39.61 -0.39 -1.74 16 22 C 0.01 0.11 6.36 -38.98 -0.25 -0.14 16 23 Cl -0.04 -0.56 26.04 -51.86 -1.35 -1.91 16 24 C -0.02 -0.36 2.42 -104.63 -0.25 -0.61 16 25 C -0.13 -1.83 6.96 -39.59 -0.28 -2.11 16 26 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 27 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 28 C -0.11 -1.67 10.05 -39.59 -0.40 -2.06 16 29 C -0.10 -1.71 8.82 -39.58 -0.35 -2.06 16 30 H 0.10 1.33 7.38 -51.93 -0.38 0.95 16 31 H 0.14 2.29 6.34 -51.93 -0.33 1.97 16 32 H 0.10 1.54 5.85 -51.93 -0.30 1.24 16 33 H 0.06 0.77 4.98 -51.93 -0.26 0.52 16 34 H 0.04 0.83 6.24 -51.93 -0.32 0.51 16 35 H 0.03 0.69 7.39 -51.93 -0.38 0.31 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.15 1.76 2.56 -52.49 -0.13 1.62 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.53 5.71 -52.48 -0.30 1.23 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.12 2.10 7.58 -52.49 -0.40 1.70 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -30.04 380.94 -9.40 -39.44 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.82 Total: 3.51 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -5.54 Total: -23.14 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 1.52 Total: -31.34 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.08 Total: -7.78 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.35 Total: -1.91 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.04 -9.40 -39.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044125560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.982 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds