Wall clock time and date at job start Tue Mar 31 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48495 * 109.47361 * 240.00305 * 3 2 1 5 5 H 1.48499 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47015 * 120.00041 * 3 2 1 7 7 C 1.39913 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99841 * 175.58142 * 7 2 1 9 9 C 1.41133 * 120.00168 * 355.58143 * 7 2 1 10 10 C 1.40878 * 120.15982 * 214.77529 * 9 7 2 11 11 C 1.36360 * 119.82968 * 180.02562 * 10 9 7 12 12 C 1.39521 * 120.16577 * 0.02562 * 11 10 9 13 13 N 1.39122 * 119.83220 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00421 * 35.31976 * 13 12 11 15 15 O 1.21559 * 119.99835 * 355.71091 * 14 13 12 16 16 C 1.47792 * 119.99934 * 175.70923 * 14 13 12 17 17 C 1.39626 * 120.14739 * 0.02562 * 16 14 13 18 18 C 1.37929 * 119.84961 * 179.97438 * 17 16 14 19 19 C 1.38391 * 120.14863 * 0.02562 * 18 17 16 20 20 C 1.38345 * 120.29641 * 359.97227 * 19 18 17 21 21 C 1.50698 * 119.92724 * 179.97438 * 20 19 18 22 22 N 1.46907 * 109.46849 * 90.00157 * 21 20 19 23 23 C 1.47012 * 110.99619 * 170.00185 * 22 21 20 24 24 C 1.53099 * 109.25635 * 177.61200 * 23 22 21 25 25 O 1.43023 * 109.29514 * 56.82464 * 24 23 22 26 26 C 1.43019 * 113.73310 * 301.40216 * 25 24 23 27 27 C 1.47019 * 110.99593 * 46.36921 * 22 21 20 28 28 C 1.37968 * 120.14759 * 0.28005 * 20 19 18 29 29 C 1.39504 * 120.32724 * 0.25713 * 12 11 10 30 30 C 1.36368 * 120.16743 * 359.43861 * 29 12 11 31 31 H 0.97006 * 119.99924 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.08674 * 359.97438 * 10 9 7 33 33 H 1.08001 * 119.91587 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99717 * 215.31500 * 13 12 11 35 35 H 1.08002 * 120.07540 * 359.97422 * 17 16 14 36 36 H 1.07997 * 119.92641 * 179.97438 * 18 17 16 37 37 H 1.07995 * 119.85129 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47335 * 330.00891 * 21 20 19 39 39 H 1.08997 * 109.47637 * 210.00420 * 21 20 19 40 40 H 1.08997 * 109.51049 * 57.67937 * 23 22 21 41 41 H 1.09007 * 109.50831 * 297.54008 * 23 22 21 42 42 H 1.09000 * 109.50859 * 176.78346 * 24 23 22 43 43 H 1.09006 * 109.50686 * 296.86885 * 24 23 22 44 44 H 1.08999 * 109.47275 * 298.65946 * 26 25 24 45 45 H 1.09006 * 109.53658 * 178.57809 * 26 25 24 46 46 H 1.09000 * 109.50333 * 302.32605 * 27 22 21 47 47 H 1.08998 * 109.50527 * 62.40935 * 27 22 21 48 48 H 1.08004 * 120.07573 * 179.72401 * 28 20 19 49 49 H 1.08001 * 119.91650 * 179.72893 * 29 12 11 50 50 H 1.07994 * 120.08395 * 180.25020 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0964 1.6963 1.2124 7 6 2.0082 -1.2117 -0.0005 8 1 3.0859 -1.2131 -0.0726 9 6 1.3057 -2.4322 0.0931 10 6 1.8649 -3.5188 0.7939 11 6 1.1805 -4.6951 0.8797 12 6 -0.0703 -4.8242 0.2751 13 7 -0.7622 -6.0276 0.3666 14 6 -0.6813 -6.7680 1.4899 15 8 0.0569 -6.4242 2.3924 16 6 -1.4900 -7.9977 1.6243 17 6 -2.3385 -8.3956 0.5893 18 6 -3.0901 -9.5446 0.7210 19 6 -3.0049 -10.3022 1.8760 20 6 -2.1662 -9.9136 2.9053 21 6 -2.0804 -10.7445 4.1596 22 7 -1.0233 -11.7532 4.0073 23 6 -0.7475 -12.4244 5.2859 24 6 0.3147 -13.5056 5.0698 25 8 1.4870 -12.9105 4.5068 26 6 1.2545 -12.2476 3.2610 27 6 0.2019 -11.1536 3.4588 28 6 -1.4128 -8.7637 2.7886 29 6 -0.6277 -3.7544 -0.4256 30 6 0.0422 -2.5699 -0.5146 31 1 -0.4850 0.8401 0.0004 32 1 2.8336 -3.4207 1.2614 33 1 1.6077 -5.5289 1.4170 34 1 -1.3031 -6.3338 -0.3782 35 1 -2.4062 -7.8050 -0.3124 36 1 -3.7471 -9.8533 -0.0786 37 1 -3.5952 -11.2012 1.9739 38 1 -3.0349 -11.2419 4.3320 39 1 -1.8482 -10.1000 5.0073 40 1 -1.6624 -12.8830 5.6610 41 1 -0.3823 -11.6948 6.0087 42 1 0.5638 -13.9672 6.0253 43 1 -0.0713 -14.2642 4.3888 44 1 0.8962 -12.9691 2.5268 45 1 2.1832 -11.7994 2.9077 46 1 -0.0201 -10.6845 2.5003 47 1 0.5817 -10.4031 4.1521 48 1 -0.7618 -8.4591 3.5947 49 1 -1.5944 -3.8630 -0.8947 50 1 -0.3924 -1.7414 -1.0539 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044842391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:46 Heat of formation + Delta-G solvation = -19.577146 kcal Electronic energy + Delta-G solvation = -31608.737886 eV Core-core repulsion = 27372.638764 eV Total energy + Delta-G solvation = -4236.099122 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.55887 -39.78719 -38.69728 -37.18223 -36.07173 -34.52993 -33.08756 -32.07309 -31.50391 -31.11030 -29.60850 -28.91520 -28.14401 -25.38956 -24.76423 -24.38016 -23.51032 -21.87132 -21.49159 -20.89937 -20.54081 -19.46605 -17.79050 -17.31017 -16.93812 -16.45378 -16.39428 -16.17216 -15.63253 -15.40787 -15.33387 -15.17328 -14.79526 -14.68669 -14.33788 -14.25841 -13.92944 -13.78213 -13.28836 -13.06971 -12.76569 -12.67285 -12.48749 -12.36999 -12.14423 -11.93237 -11.71928 -11.71204 -11.53445 -11.37501 -11.20196 -11.13329 -11.03469 -10.89461 -10.74870 -10.07832 -10.00203 -9.52675 -9.48003 -9.20147 -9.14350 -9.06665 -8.90747 -8.68544 -7.57096 -6.88560 -6.63760 -4.36047 0.75424 1.09113 2.58427 2.97952 3.07183 3.08545 3.10871 3.20777 3.47723 3.59842 3.60766 3.92017 3.97173 4.29486 4.53749 4.60314 4.66365 4.68158 4.73779 4.81528 4.82556 4.90758 4.99153 5.05508 5.12555 5.20095 5.28234 5.31909 5.38895 5.44158 5.58552 5.60388 5.64935 5.66784 5.77618 6.14553 6.15634 6.18311 6.27038 6.42851 6.52680 6.55368 6.66571 6.72709 6.82202 6.90322 7.04724 7.18059 7.27573 7.61697 7.71540 7.84208 8.04033 8.22133 8.29377 8.59337 8.69632 8.90586 8.97602 10.27188 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.001780 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.654691 B =15727.791397 C =16779.589326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.084 4.084 12 C 0.001 3.999 13 N -0.643 5.643 14 C 0.539 3.461 15 O -0.528 6.528 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.126 4.126 19 C -0.080 4.080 20 C -0.098 4.098 21 C 0.095 3.905 22 N -0.531 5.531 23 C 0.016 3.984 24 C 0.064 3.936 25 O -0.386 6.386 26 C 0.064 3.936 27 C 0.012 3.988 28 C -0.057 4.057 29 C -0.119 4.119 30 C -0.141 4.141 31 H 0.278 0.722 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.395 0.605 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.047 0.953 48 H 0.132 0.868 49 H 0.091 0.909 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 -23.581 4.051 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.092 4.092 13 N -0.285 5.285 14 C 0.326 3.674 15 O -0.406 6.406 16 C -0.124 4.124 17 C -0.106 4.106 18 C -0.144 4.144 19 C -0.099 4.099 20 C -0.098 4.098 21 C -0.032 4.032 22 N -0.256 5.256 23 C -0.113 4.113 24 C -0.013 4.013 25 O -0.305 6.305 26 C -0.013 4.013 27 C -0.116 4.116 28 C -0.076 4.076 29 C -0.140 4.140 30 C -0.161 4.161 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.229 0.771 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.065 0.935 48 H 0.150 0.850 49 H 0.109 0.891 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.277 -23.522 4.467 25.024 hybrid contribution -0.149 1.385 0.141 1.400 sum -7.426 -22.138 4.607 23.800 Atomic orbital electron populations 1.69754 1.07291 1.28853 1.37911 1.25893 0.94962 1.01201 0.92545 0.86235 0.79791 0.80051 0.79789 1.19029 1.20425 1.19085 1.19474 0.94736 0.90210 1.44637 0.90595 1.17734 0.92283 0.92011 0.88169 1.20810 1.01266 0.94930 1.05577 1.20406 0.92721 0.97868 0.99351 1.17250 0.94304 0.85714 1.11888 1.42883 1.48481 1.21215 1.15946 1.18238 0.82926 0.83655 0.82541 1.90760 1.39067 1.70742 1.39990 1.20081 0.99768 0.96643 0.95944 1.21389 0.94849 0.96476 0.97907 1.21086 1.00006 0.95186 0.98162 1.21157 0.97249 0.98838 0.92628 1.19627 0.98145 0.95537 0.96488 1.21085 0.95908 0.92105 0.94053 1.62392 1.07988 1.29358 1.25867 1.22823 1.00013 0.97709 0.90715 1.22641 0.85322 0.94212 0.99101 1.88004 1.32416 1.72500 1.37536 1.22692 0.98733 0.93870 0.85962 1.22930 0.90153 0.96869 1.01682 1.21193 0.96848 0.92666 0.96906 1.20316 0.98340 0.93124 1.02174 1.21188 0.97293 0.95526 1.02119 0.91056 0.88537 0.87456 0.77072 0.85504 0.85351 0.85567 0.89394 0.93418 0.89527 0.93675 0.88486 0.92300 0.92296 0.88257 0.88873 0.93512 0.84973 0.89064 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.07 10.60 55.55 0.59 -20.48 16 2 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 3 Si 0.92 19.01 29.56 -169.99 -5.03 13.98 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.26 9.02 -37.86 -0.34 -12.60 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 11 C -0.08 -2.01 8.61 -39.78 -0.34 -2.36 16 12 C 0.00 0.02 6.30 -83.60 -0.53 -0.51 16 13 N -0.64 -11.42 5.25 -10.61 -0.06 -11.48 16 14 C 0.54 9.69 7.60 -12.35 -0.09 9.60 16 15 O -0.53 -11.54 13.76 5.31 0.07 -11.46 16 16 C -0.12 -1.66 5.87 -104.97 -0.62 -2.27 16 17 C -0.09 -0.93 9.54 -39.18 -0.37 -1.30 16 18 C -0.13 -1.10 10.03 -39.64 -0.40 -1.50 16 19 C -0.08 -0.69 9.69 -39.49 -0.38 -1.08 16 20 C -0.10 -0.97 4.13 -104.68 -0.43 -1.40 16 21 C 0.10 0.81 5.43 -4.97 -0.03 0.78 16 22 N -0.53 -4.69 4.87 -235.74 -1.15 -5.84 16 23 C 0.02 0.12 5.62 -3.71 -0.02 0.10 16 24 C 0.06 0.49 7.01 37.21 0.26 0.75 16 25 O -0.39 -4.03 10.83 -35.23 -0.38 -4.41 16 26 C 0.06 0.60 7.01 37.21 0.26 0.86 16 27 C 0.01 0.12 4.66 -3.71 -0.02 0.10 16 28 C -0.06 -0.71 7.42 -39.18 -0.29 -1.00 16 29 C -0.12 -2.72 9.90 -39.78 -0.39 -3.11 16 30 C -0.14 -3.62 8.61 -39.26 -0.34 -3.96 16 31 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 32 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 33 H 0.11 2.56 6.22 -52.49 -0.33 2.23 16 34 H 0.39 5.48 6.86 -40.82 -0.28 5.20 16 35 H 0.13 1.12 6.41 -52.49 -0.34 0.79 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 39 H 0.05 0.42 8.02 -51.93 -0.42 0.01 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.13 1.81 7.65 -52.48 -0.40 1.41 16 49 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 50 H 0.13 3.49 6.13 -52.49 -0.32 3.16 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -31.36 404.05 -12.01 -43.38 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.01 Total: 11.00 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -5.14 Total: -20.78 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.62 Total: -37.79 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.31 Total: -15.87 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.36 -12.01 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044842391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.798 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds