Wall clock time and date at job start Tue Mar 31 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48495 * 109.47361 * 240.00305 * 3 2 1 5 5 H 1.48499 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47015 * 120.00041 * 3 2 1 7 7 C 1.39913 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99841 * 175.58142 * 7 2 1 9 9 C 1.41133 * 120.00168 * 355.58143 * 7 2 1 10 10 C 1.40878 * 120.15982 * 214.77529 * 9 7 2 11 11 C 1.36360 * 119.82968 * 180.02562 * 10 9 7 12 12 C 1.39521 * 120.16577 * 0.02562 * 11 10 9 13 13 N 1.39122 * 119.83220 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00421 * 35.31976 * 13 12 11 15 15 O 1.21559 * 119.99835 * 355.71091 * 14 13 12 16 16 C 1.47792 * 119.99934 * 175.70923 * 14 13 12 17 17 C 1.39626 * 120.14739 * 0.02562 * 16 14 13 18 18 C 1.37929 * 119.84961 * 179.97438 * 17 16 14 19 19 C 1.38391 * 120.14863 * 0.02562 * 18 17 16 20 20 C 1.38345 * 120.29641 * 359.97227 * 19 18 17 21 21 C 1.50698 * 119.92724 * 179.97438 * 20 19 18 22 22 N 1.46907 * 109.46849 * 90.00157 * 21 20 19 23 23 C 1.47012 * 110.99619 * 170.00185 * 22 21 20 24 24 C 1.53099 * 109.25635 * 177.61200 * 23 22 21 25 25 O 1.43023 * 109.29514 * 56.82464 * 24 23 22 26 26 C 1.43019 * 113.73310 * 301.40216 * 25 24 23 27 27 C 1.47019 * 110.99593 * 46.36921 * 22 21 20 28 28 C 1.37968 * 120.14759 * 0.28005 * 20 19 18 29 29 C 1.39504 * 120.32724 * 0.25713 * 12 11 10 30 30 C 1.36368 * 120.16743 * 359.43861 * 29 12 11 31 31 H 0.97006 * 119.99924 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.08674 * 359.97438 * 10 9 7 33 33 H 1.08001 * 119.91587 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99717 * 215.31500 * 13 12 11 35 35 H 1.08002 * 120.07540 * 359.97422 * 17 16 14 36 36 H 1.07997 * 119.92641 * 179.97438 * 18 17 16 37 37 H 1.07995 * 119.85129 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47335 * 330.00891 * 21 20 19 39 39 H 1.08997 * 109.47637 * 210.00420 * 21 20 19 40 40 H 1.08997 * 109.51049 * 57.67937 * 23 22 21 41 41 H 1.09007 * 109.50831 * 297.54008 * 23 22 21 42 42 H 1.09000 * 109.50859 * 176.78346 * 24 23 22 43 43 H 1.09006 * 109.50686 * 296.86885 * 24 23 22 44 44 H 1.08999 * 109.47275 * 298.65946 * 26 25 24 45 45 H 1.09006 * 109.53658 * 178.57809 * 26 25 24 46 46 H 1.09000 * 109.50333 * 302.32605 * 27 22 21 47 47 H 1.08998 * 109.50527 * 62.40935 * 27 22 21 48 48 H 1.08004 * 120.07573 * 179.72401 * 28 20 19 49 49 H 1.08001 * 119.91650 * 179.72893 * 29 12 11 50 50 H 1.07994 * 120.08395 * 180.25020 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0964 1.6963 1.2124 7 6 2.0082 -1.2117 -0.0005 8 1 3.0859 -1.2131 -0.0726 9 6 1.3057 -2.4322 0.0931 10 6 1.8649 -3.5188 0.7939 11 6 1.1805 -4.6951 0.8797 12 6 -0.0703 -4.8242 0.2751 13 7 -0.7622 -6.0276 0.3666 14 6 -0.6813 -6.7680 1.4899 15 8 0.0569 -6.4242 2.3924 16 6 -1.4900 -7.9977 1.6243 17 6 -2.3385 -8.3956 0.5893 18 6 -3.0901 -9.5446 0.7210 19 6 -3.0049 -10.3022 1.8760 20 6 -2.1662 -9.9136 2.9053 21 6 -2.0804 -10.7445 4.1596 22 7 -1.0233 -11.7532 4.0073 23 6 -0.7475 -12.4244 5.2859 24 6 0.3147 -13.5056 5.0698 25 8 1.4870 -12.9105 4.5068 26 6 1.2545 -12.2476 3.2610 27 6 0.2019 -11.1536 3.4588 28 6 -1.4128 -8.7637 2.7886 29 6 -0.6277 -3.7544 -0.4256 30 6 0.0422 -2.5699 -0.5146 31 1 -0.4850 0.8401 0.0004 32 1 2.8336 -3.4207 1.2614 33 1 1.6077 -5.5289 1.4170 34 1 -1.3031 -6.3338 -0.3782 35 1 -2.4062 -7.8050 -0.3124 36 1 -3.7471 -9.8533 -0.0786 37 1 -3.5952 -11.2012 1.9739 38 1 -3.0349 -11.2419 4.3320 39 1 -1.8482 -10.1000 5.0073 40 1 -1.6624 -12.8830 5.6610 41 1 -0.3823 -11.6948 6.0087 42 1 0.5638 -13.9672 6.0253 43 1 -0.0713 -14.2642 4.3888 44 1 0.8962 -12.9691 2.5268 45 1 2.1832 -11.7994 2.9077 46 1 -0.0201 -10.6845 2.5003 47 1 0.5817 -10.4031 4.1521 48 1 -0.7618 -8.4591 3.5947 49 1 -1.5944 -3.8630 -0.8947 50 1 -0.3924 -1.7414 -1.0539 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044842391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:45 Heat of formation + Delta-G solvation = -38.777597 kcal Electronic energy + Delta-G solvation = -31609.570480 eV Core-core repulsion = 27372.638764 eV Total energy + Delta-G solvation = -4236.931716 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.67901 -40.80207 -39.78028 -38.87003 -36.83786 -36.25456 -34.82591 -32.96031 -32.35659 -31.91069 -31.51453 -30.67668 -28.95236 -27.07994 -25.48969 -25.18511 -24.73644 -23.30529 -22.64690 -22.50432 -21.46611 -20.83238 -19.31282 -18.95275 -17.95906 -17.62095 -17.16941 -17.07945 -17.04730 -16.42696 -16.28195 -16.20991 -16.00260 -15.77534 -15.65036 -15.29093 -15.08062 -14.87458 -14.74752 -14.49390 -14.08642 -13.98243 -13.67787 -13.53652 -13.26290 -13.16022 -13.12658 -12.89652 -12.79761 -12.65542 -12.49805 -12.39850 -12.31703 -11.93338 -11.81673 -11.56968 -11.43199 -11.25777 -10.90261 -10.71081 -10.66700 -9.96974 -9.93001 -9.50941 -9.42798 -8.76953 -8.52991 -6.35719 -0.19641 0.28582 0.82150 1.10604 1.38527 1.47637 1.50788 1.87125 2.20472 2.24490 2.62449 2.78246 2.89445 3.03677 3.56375 3.60029 3.70084 3.85604 3.90066 3.99379 4.02639 4.14366 4.22689 4.23727 4.31116 4.34809 4.35758 4.48002 4.55799 4.57033 4.68368 4.69845 4.77939 4.82751 4.88185 4.89165 4.96703 4.99697 5.08621 5.11168 5.27064 5.32939 5.38742 5.39527 5.49955 5.66236 5.80728 5.84032 5.87265 5.92561 5.98611 6.10244 6.15086 6.35218 6.62132 6.65421 6.93677 6.95868 7.27847 8.39680 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.001780 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.654691 B =15727.791397 C =16779.589326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.497 4.497 8 H 0.073 0.927 9 C 0.068 3.932 10 C -0.222 4.222 11 C -0.097 4.097 12 C 0.016 3.984 13 N -0.636 5.636 14 C 0.538 3.462 15 O -0.576 6.576 16 C -0.146 4.146 17 C -0.084 4.084 18 C -0.117 4.117 19 C -0.065 4.065 20 C -0.097 4.097 21 C 0.095 3.905 22 N -0.527 5.527 23 C 0.015 3.985 24 C 0.060 3.940 25 O -0.409 6.409 26 C 0.065 3.935 27 C 0.017 3.983 28 C -0.068 4.068 29 C -0.116 4.116 30 C -0.158 4.158 31 H 0.286 0.714 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.416 0.584 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.036 0.964 40 H 0.113 0.887 41 H 0.032 0.968 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.022 0.978 48 H 0.105 0.895 49 H 0.127 0.873 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 -25.998 3.253 28.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.091 0.909 9 C 0.066 3.934 10 C -0.242 4.242 11 C -0.117 4.117 12 C -0.077 4.077 13 N -0.280 5.280 14 C 0.329 3.671 15 O -0.457 6.457 16 C -0.149 4.149 17 C -0.103 4.103 18 C -0.135 4.135 19 C -0.084 4.084 20 C -0.098 4.098 21 C -0.031 4.031 22 N -0.252 5.252 23 C -0.113 4.113 24 C -0.017 4.017 25 O -0.328 6.328 26 C -0.012 4.012 27 C -0.111 4.111 28 C -0.088 4.088 29 C -0.136 4.136 30 C -0.178 4.178 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.255 0.745 35 H 0.163 0.837 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.133 0.867 39 H 0.055 0.945 40 H 0.131 0.869 41 H 0.050 0.950 42 H 0.133 0.867 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.102 0.898 47 H 0.040 0.960 48 H 0.124 0.876 49 H 0.145 0.855 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.050 -25.986 3.646 28.099 hybrid contribution 0.588 1.878 0.452 2.019 sum -9.461 -24.107 4.097 26.220 Atomic orbital electron populations 1.69815 1.08566 1.30117 1.38210 1.26761 0.95852 1.04340 0.91533 0.85141 0.78505 0.75499 0.79842 1.18127 1.19133 1.19105 1.19704 0.94884 0.91290 1.46851 0.90861 1.18053 0.93417 0.92656 0.89281 1.20925 1.01653 0.95497 1.06124 1.20508 0.93797 0.97416 0.99936 1.17310 0.93536 0.87230 1.09627 1.42763 1.48364 1.19806 1.17094 1.18979 0.82225 0.84410 0.81498 1.90732 1.41233 1.72168 1.41588 1.19760 1.01558 0.95613 0.97997 1.21620 0.93885 0.97376 0.97370 1.21502 0.99247 0.93754 0.98973 1.21585 0.95852 0.99329 0.91607 1.19756 0.97792 0.94561 0.97672 1.21169 0.96933 0.92001 0.93013 1.62473 1.07248 1.28953 1.26557 1.22914 1.01211 0.97370 0.89787 1.22859 0.84514 0.94228 1.00076 1.87973 1.34162 1.72765 1.37920 1.22701 0.98587 0.93828 0.86052 1.22809 0.91095 0.96568 1.00662 1.21087 0.97526 0.94051 0.96134 1.20572 0.99358 0.92005 1.01670 1.21184 0.97423 0.96435 1.02744 0.90374 0.88625 0.87754 0.74504 0.83651 0.81661 0.82317 0.86666 0.94536 0.86925 0.95004 0.86713 0.91327 0.91253 0.88346 0.89766 0.95986 0.87648 0.85482 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.58 10.60 21.82 0.23 -44.35 16 2 C 0.03 1.41 5.42 85.24 0.46 1.87 16 3 Si 0.99 39.47 29.56 68.60 2.03 41.49 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.50 -27.64 9.02 23.39 0.21 -27.43 16 8 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 9 C 0.07 3.84 5.55 -21.28 -0.12 3.72 16 10 C -0.22 -11.92 9.74 22.48 0.22 -11.70 16 11 C -0.10 -4.85 8.61 22.14 0.19 -4.66 16 12 C 0.02 0.74 6.30 38.60 0.24 0.98 16 13 N -0.64 -22.25 5.25 -305.75 -1.60 -23.85 16 14 C 0.54 19.71 7.60 86.77 0.66 20.37 16 15 O -0.58 -26.54 13.76 -3.90 -0.05 -26.59 16 16 C -0.15 -3.92 5.87 -20.09 -0.12 -4.04 16 17 C -0.08 -1.53 9.54 22.53 0.21 -1.32 16 18 C -0.12 -1.49 10.03 22.23 0.22 -1.27 16 19 C -0.07 -0.85 9.69 22.33 0.22 -0.63 16 20 C -0.10 -1.75 4.13 -19.90 -0.08 -1.83 16 21 C 0.10 1.44 5.43 85.55 0.46 1.90 16 22 N -0.53 -8.46 4.87 -899.76 -4.38 -12.84 16 23 C 0.01 0.20 5.62 86.31 0.49 0.68 16 24 C 0.06 0.80 7.01 72.02 0.50 1.30 16 25 O -0.41 -8.34 10.83 -148.98 -1.61 -9.95 16 26 C 0.07 1.21 7.01 72.01 0.50 1.71 16 27 C 0.02 0.34 4.66 86.31 0.40 0.75 16 28 C -0.07 -1.73 7.42 22.53 0.17 -1.56 16 29 C -0.12 -5.27 9.90 22.14 0.22 -5.05 16 30 C -0.16 -8.32 8.61 22.48 0.19 -8.13 16 31 H 0.29 13.78 8.30 -92.70 -0.77 13.01 16 32 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.10 5.25 6.22 -2.91 -0.02 5.23 16 34 H 0.42 10.72 6.86 -92.71 -0.64 10.08 16 35 H 0.15 2.03 6.41 -2.91 -0.02 2.02 16 36 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.12 1.13 8.08 -2.39 -0.02 1.11 16 39 H 0.04 0.64 8.02 -2.39 -0.02 0.62 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.08 1.83 5.93 -2.39 -0.01 1.82 16 47 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.11 3.17 7.65 -2.91 -0.02 3.15 16 49 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 50 H 0.12 6.60 6.13 -2.91 -0.02 6.59 16 Total: -1.00 -73.01 404.05 0.20 -72.81 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.33 Total: 37.61 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 5.26 Total: -34.33 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -5.76 Total: -81.04 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.67 Total: -36.55 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Total: -73.01 0.20 -72.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044842391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.030 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds