Wall clock time and date at job start Tue Mar 31 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47544 * 2 1 4 4 C 1.53006 * 109.46530 * 240.00278 * 2 1 3 5 5 C 1.50696 * 109.47348 * 120.00672 * 2 1 3 6 6 C 1.38362 * 119.85148 * 59.99388 * 5 2 1 7 7 C 1.37951 * 120.15052 * 180.02562 * 6 5 2 8 8 C 1.39606 * 119.84662 * 359.97438 * 7 6 5 9 9 C 1.47790 * 120.14585 * 179.97438 * 8 7 6 10 10 O 1.21596 * 119.99746 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99895 * 179.97438 * 9 8 7 12 12 N 1.40095 * 119.99932 * 185.09373 * 11 9 8 13 13 C 1.29876 * 120.00200 * 185.00844 * 12 11 9 14 14 C 1.47288 * 120.00316 * 185.13963 * 13 12 11 15 15 C 1.39685 * 120.20302 * 184.64141 * 14 13 12 16 16 C 1.37877 * 119.90998 * 180.02562 * 15 14 13 17 17 C 1.38532 * 120.31763 * 0.02562 * 16 15 14 18 18 C 1.38116 * 120.40651 * 359.73929 * 17 16 15 19 19 C 1.38724 * 120.08334 * 0.51615 * 18 17 16 20 20 O 1.35604 * 120.15856 * 179.76600 * 19 18 17 21 21 C 1.34796 * 117.00004 * 93.63578 * 20 19 18 22 22 H 1.07995 * 120.00068 * 5.71238 * 21 20 19 23 23 C 1.38650 * 119.99680 * 185.43621 * 21 20 19 24 24 N 1.31564 * 119.99501 * 175.39185 * 23 21 20 25 25 Si 1.86792 * 120.00313 * 355.40007 * 23 21 20 26 26 H 1.48491 * 109.47655 * 94.97275 * 25 23 21 27 27 H 1.48501 * 109.47279 * 214.97528 * 25 23 21 28 28 H 1.48505 * 109.47128 * 334.97392 * 25 23 21 29 29 C 1.39610 * 119.70644 * 0.24821 * 8 7 6 30 30 C 1.37951 * 119.84781 * 359.51682 * 29 8 7 31 31 H 1.09004 * 109.46775 * 299.99912 * 1 2 3 32 32 H 1.09002 * 109.47009 * 59.99368 * 1 2 3 33 33 H 1.08996 * 109.47515 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47532 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47347 * 300.00867 * 3 2 1 36 36 H 1.09004 * 109.47013 * 60.00234 * 3 2 1 37 37 H 1.08993 * 109.47535 * 299.99879 * 4 2 1 38 38 H 1.09002 * 109.47186 * 60.00462 * 4 2 1 39 39 H 1.09003 * 109.46571 * 179.97438 * 4 2 1 40 40 H 1.07999 * 119.92789 * 0.02562 * 6 5 2 41 41 H 1.08005 * 120.07901 * 179.97438 * 7 6 5 42 42 H 0.97000 * 119.99871 * 5.08801 * 11 9 8 43 43 H 1.08001 * 119.99922 * 5.13414 * 13 12 11 44 44 H 1.08003 * 120.04586 * 0.04699 * 15 14 13 45 45 H 1.08005 * 119.84270 * 179.97438 * 16 15 14 46 46 H 1.08000 * 119.79433 * 180.02562 * 17 16 15 47 47 H 1.07995 * 119.95698 * 180.25141 * 18 17 16 48 48 H 0.97000 * 119.99464 * 180.02562 * 24 23 21 49 49 H 1.07996 * 120.07467 * 179.72458 * 29 8 7 50 50 H 1.07996 * 119.92514 * 180.21071 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 1.6962 -2.0352 1.4461 7 6 2.1522 -2.6915 2.5706 8 6 2.9552 -2.0161 3.4915 9 6 3.4469 -2.7126 4.6987 10 8 3.1519 -3.8763 4.8917 11 7 4.2223 -2.0578 5.5856 12 7 4.7762 -2.7453 6.6734 13 6 5.4421 -2.0969 7.5805 14 6 6.1200 -2.8314 8.6624 15 6 6.7554 -2.1354 9.6934 16 6 7.3886 -2.8290 10.7028 17 6 7.3984 -4.2143 10.6999 18 6 6.7701 -4.9157 9.6895 19 6 6.1326 -4.2348 8.6627 20 8 5.5193 -4.9219 7.6675 21 6 4.2027 -5.1699 7.8161 22 1 3.6646 -4.7471 8.6516 23 6 3.5381 -5.9630 6.8933 24 7 2.2759 -6.2798 7.0863 25 14 4.4350 -6.5820 5.3762 26 1 4.9649 -7.9446 5.6358 27 1 3.4935 -6.6275 4.2287 28 1 5.5596 -5.6660 5.0578 29 6 3.2868 -0.6781 3.2700 30 6 2.8280 -0.0353 2.1389 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6766 -1.7488 -1.2494 38 1 1.6766 -0.2073 -2.1393 39 1 3.1299 -0.7208 -1.2496 40 1 1.0753 -2.5567 0.7327 41 1 1.8887 -3.7254 2.7381 42 1 4.3970 -1.1106 5.4706 43 1 5.4990 -1.0191 7.5415 44 1 6.7505 -1.0554 9.7000 45 1 7.8799 -2.2898 11.4993 46 1 7.8966 -4.7491 11.4951 47 1 6.7788 -5.9956 9.6966 48 1 1.8111 -6.8350 6.4409 49 1 3.9038 -0.1487 3.9807 50 1 3.0865 0.9987 1.9646 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046194287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:33 Heat of formation + Delta-G solvation = 48.148118 kcal Electronic energy + Delta-G solvation = -32410.668918 eV Core-core repulsion = 28177.506584 eV Total energy + Delta-G solvation = -4233.162334 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.28894 -39.15028 -38.69719 -36.32544 -36.18189 -35.69569 -32.52682 -31.66055 -31.21855 -30.53064 -29.59363 -28.67281 -27.65998 -27.54642 -24.69580 -24.26992 -23.00505 -22.25826 -21.65070 -20.63482 -20.04040 -19.33024 -18.07554 -17.50381 -16.73001 -16.56506 -16.04413 -15.39619 -15.14761 -14.92126 -14.69102 -14.46551 -14.43847 -14.16057 -14.05681 -13.78084 -13.61002 -13.52617 -12.99371 -12.91655 -12.80425 -12.68650 -12.29491 -12.25478 -12.00248 -11.92754 -11.86388 -11.61959 -11.58414 -11.33816 -11.20717 -11.07265 -10.98446 -10.74564 -10.59857 -10.06748 -9.94921 -9.43652 -9.25126 -9.11083 -9.07193 -9.05765 -8.78542 -8.11224 -7.89045 -7.43451 -5.73065 -3.38985 0.82668 1.30048 1.41592 1.97561 2.82187 2.92968 3.31764 3.66155 3.76291 3.91174 4.04631 4.25423 4.38699 4.42091 4.67603 4.75078 4.79307 4.90284 4.92214 4.98610 5.05223 5.18486 5.25894 5.28086 5.31373 5.37370 5.43866 5.44635 5.46046 5.56617 5.56769 5.59978 5.63395 5.73519 5.76287 5.79849 5.87983 5.90312 5.94145 5.99158 6.02024 6.20865 6.25823 6.36438 6.44293 6.50234 6.61770 6.80566 6.89274 6.96795 7.22149 7.42344 7.60656 8.16003 8.19727 8.64432 8.98604 9.68986 10.22097 11.38910 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.002548 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.387443 B =10987.240982 C =12528.949051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.053 4.053 6 C -0.122 4.122 7 C -0.055 4.055 8 C -0.122 4.122 9 C 0.556 3.444 10 O -0.450 6.450 11 N -0.590 5.590 12 N -0.142 5.142 13 C 0.071 3.929 14 C -0.092 4.092 15 C -0.085 4.085 16 C -0.158 4.158 17 C -0.098 4.098 18 C -0.152 4.152 19 C 0.182 3.818 20 O -0.259 6.259 21 C -0.332 4.332 22 H 0.074 0.926 23 C 0.085 3.915 24 N -0.904 5.904 25 Si 0.924 3.076 26 H -0.304 1.304 27 H -0.292 1.292 28 H -0.272 1.272 29 C -0.088 4.088 30 C -0.130 4.130 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.369 0.631 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.127 0.873 48 H 0.265 0.735 49 H 0.123 0.877 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 17.786 -10.434 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.197 4.197 5 C -0.053 4.053 6 C -0.140 4.140 7 C -0.074 4.074 8 C -0.127 4.127 9 C 0.342 3.658 10 O -0.318 6.318 11 N -0.333 5.333 12 N 0.054 4.946 13 C -0.139 4.139 14 C -0.095 4.095 15 C -0.106 4.106 16 C -0.176 4.176 17 C -0.118 4.118 18 C -0.170 4.170 19 C 0.134 3.866 20 O -0.171 6.171 21 C -0.408 4.408 22 H 0.092 0.908 23 C -0.114 4.114 24 N -0.548 5.548 25 Si 0.755 3.245 26 H -0.233 1.233 27 H -0.219 1.219 28 H -0.197 1.197 29 C -0.107 4.107 30 C -0.148 4.148 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.207 0.793 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.145 0.855 48 H 0.075 0.925 49 H 0.140 0.860 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.775 15.942 -11.039 19.472 hybrid contribution 0.485 1.349 -0.439 1.500 sum 2.261 17.291 -11.479 20.877 Atomic orbital electron populations 1.21900 0.93434 1.02360 1.01960 1.19554 0.95915 0.95083 0.92666 1.21973 1.01256 0.94899 1.02030 1.21902 1.01365 1.00381 0.96011 1.19997 0.96050 0.93901 0.95341 1.20949 1.01068 0.94256 0.97727 1.21337 0.93440 1.00638 0.91960 1.19991 1.01910 0.94575 0.96188 1.18060 0.78624 0.87121 0.82023 1.90866 1.52201 1.15056 1.73717 1.47164 1.51242 1.10742 1.24170 1.76119 1.03221 1.20964 0.94320 1.24210 0.98259 0.96157 0.95249 1.18908 1.02059 0.93272 0.95227 1.20902 0.97343 0.98902 0.93461 1.20781 1.03090 0.94258 0.99470 1.21034 0.98566 0.94135 0.98035 1.21567 1.00923 1.00830 0.93717 1.19069 0.91340 0.88952 0.87258 1.83382 1.24351 1.71524 1.37889 1.19931 0.79952 1.29358 1.11513 0.90836 1.23903 0.94549 0.95925 0.96985 1.69639 1.09543 1.38951 1.36656 0.85890 0.79168 0.76305 0.83140 1.23280 1.21885 1.19656 1.21295 0.98574 0.93443 0.97382 1.21056 0.99097 1.00354 0.94277 0.92352 0.92277 0.92199 0.92172 0.92314 0.92153 0.92210 0.92272 0.92386 0.85473 0.84315 0.79295 0.87737 0.86358 0.86536 0.86508 0.85512 0.92504 0.85960 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.28 37.16 0.31 -0.72 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -0.95 7.13 37.16 0.26 -0.68 16 4 C -0.14 -1.03 8.29 37.16 0.31 -0.72 16 5 C -0.05 -0.55 4.77 -104.53 -0.50 -1.05 16 6 C -0.12 -1.46 8.69 -39.64 -0.34 -1.80 16 7 C -0.05 -0.84 9.60 -39.18 -0.38 -1.22 16 8 C -0.12 -1.95 5.87 -104.97 -0.62 -2.57 16 9 C 0.56 11.58 7.89 -12.35 -0.10 11.48 16 10 O -0.45 -11.84 12.60 5.28 0.07 -11.77 16 11 N -0.59 -11.21 6.20 30.52 0.19 -11.02 16 12 N -0.14 -3.23 7.62 32.13 0.24 -2.98 16 13 C 0.07 1.34 10.74 -14.70 -0.16 1.18 16 14 C -0.09 -1.78 5.88 -104.88 -0.62 -2.40 16 15 C -0.09 -1.30 9.79 -39.17 -0.38 -1.68 16 16 C -0.16 -2.25 10.03 -39.60 -0.40 -2.64 16 17 C -0.10 -1.54 10.03 -39.52 -0.40 -1.93 16 18 C -0.15 -2.97 9.98 -39.45 -0.39 -3.37 16 19 C 0.18 4.17 5.61 -38.61 -0.22 3.95 16 20 O -0.26 -7.16 7.13 0.59 0.00 -7.16 16 21 C -0.33 -10.10 8.55 30.88 0.26 -9.84 16 22 H 0.07 2.41 7.99 -52.49 -0.42 1.99 16 23 C 0.09 2.68 4.59 -17.51 -0.08 2.60 16 24 N -0.90 -29.49 13.96 55.48 0.77 -28.71 16 25 Si 0.92 26.78 25.81 -169.99 -4.39 22.39 16 26 H -0.30 -8.59 7.11 56.52 0.40 -8.18 16 27 H -0.29 -8.43 7.11 56.52 0.40 -8.03 16 28 H -0.27 -8.04 7.11 56.52 0.40 -7.64 16 29 C -0.09 -1.07 9.54 -39.17 -0.37 -1.44 16 30 C -0.13 -1.34 8.96 -39.64 -0.36 -1.70 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 34 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 37 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.13 1.27 7.08 -52.49 -0.37 0.90 16 41 H 0.14 2.33 7.65 -52.48 -0.40 1.93 16 42 H 0.37 5.13 6.72 -182.60 -1.23 3.90 16 43 H 0.11 1.45 8.04 -52.49 -0.42 1.03 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 47 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 48 H 0.27 8.27 8.31 -40.82 -0.34 7.93 16 49 H 0.12 1.18 6.42 -52.49 -0.34 0.84 16 50 H 0.13 1.02 5.87 -52.49 -0.31 0.71 16 LS Contribution 410.48 15.07 6.19 6.19 Total: -1.00 -38.59 410.48 -9.19 -47.77 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.97 Total: 0.23 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -4.29 Total: -14.93 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 1.21 Total: -42.71 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.07 Total: -18.93 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.39 Total: 22.39 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -38.59 -9.19 -47.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046194287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.920 kcal (2) G-P(sol) polarization free energy of solvation -38.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds