Wall clock time and date at job start Tue Mar 31 2020 05:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47544 * 2 1 4 4 C 1.53006 * 109.46530 * 240.00278 * 2 1 3 5 5 C 1.50696 * 109.47348 * 120.00672 * 2 1 3 6 6 C 1.38362 * 119.85148 * 59.99388 * 5 2 1 7 7 C 1.37951 * 120.15052 * 180.02562 * 6 5 2 8 8 C 1.39606 * 119.84662 * 359.97438 * 7 6 5 9 9 C 1.47790 * 120.14585 * 179.97438 * 8 7 6 10 10 O 1.21596 * 119.99746 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99895 * 179.97438 * 9 8 7 12 12 N 1.40095 * 119.99932 * 185.09373 * 11 9 8 13 13 C 1.29876 * 120.00200 * 185.00844 * 12 11 9 14 14 C 1.47288 * 120.00316 * 185.13963 * 13 12 11 15 15 C 1.39685 * 120.20302 * 184.64141 * 14 13 12 16 16 C 1.37877 * 119.90998 * 180.02562 * 15 14 13 17 17 C 1.38532 * 120.31763 * 0.02562 * 16 15 14 18 18 C 1.38116 * 120.40651 * 359.73929 * 17 16 15 19 19 C 1.38724 * 120.08334 * 0.51615 * 18 17 16 20 20 O 1.35604 * 120.15856 * 179.76600 * 19 18 17 21 21 C 1.34796 * 117.00004 * 93.63578 * 20 19 18 22 22 H 1.07995 * 120.00068 * 5.71238 * 21 20 19 23 23 C 1.38650 * 119.99680 * 185.43621 * 21 20 19 24 24 N 1.31564 * 119.99501 * 175.39185 * 23 21 20 25 25 Si 1.86792 * 120.00313 * 355.40007 * 23 21 20 26 26 H 1.48491 * 109.47655 * 94.97275 * 25 23 21 27 27 H 1.48501 * 109.47279 * 214.97528 * 25 23 21 28 28 H 1.48505 * 109.47128 * 334.97392 * 25 23 21 29 29 C 1.39610 * 119.70644 * 0.24821 * 8 7 6 30 30 C 1.37951 * 119.84781 * 359.51682 * 29 8 7 31 31 H 1.09004 * 109.46775 * 299.99912 * 1 2 3 32 32 H 1.09002 * 109.47009 * 59.99368 * 1 2 3 33 33 H 1.08996 * 109.47515 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47532 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47347 * 300.00867 * 3 2 1 36 36 H 1.09004 * 109.47013 * 60.00234 * 3 2 1 37 37 H 1.08993 * 109.47535 * 299.99879 * 4 2 1 38 38 H 1.09002 * 109.47186 * 60.00462 * 4 2 1 39 39 H 1.09003 * 109.46571 * 179.97438 * 4 2 1 40 40 H 1.07999 * 119.92789 * 0.02562 * 6 5 2 41 41 H 1.08005 * 120.07901 * 179.97438 * 7 6 5 42 42 H 0.97000 * 119.99871 * 5.08801 * 11 9 8 43 43 H 1.08001 * 119.99922 * 5.13414 * 13 12 11 44 44 H 1.08003 * 120.04586 * 0.04699 * 15 14 13 45 45 H 1.08005 * 119.84270 * 179.97438 * 16 15 14 46 46 H 1.08000 * 119.79433 * 180.02562 * 17 16 15 47 47 H 1.07995 * 119.95698 * 180.25141 * 18 17 16 48 48 H 0.97000 * 119.99464 * 180.02562 * 24 23 21 49 49 H 1.07996 * 120.07467 * 179.72458 * 29 8 7 50 50 H 1.07996 * 119.92514 * 180.21071 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 1.6962 -2.0352 1.4461 7 6 2.1522 -2.6915 2.5706 8 6 2.9552 -2.0161 3.4915 9 6 3.4469 -2.7126 4.6987 10 8 3.1519 -3.8763 4.8917 11 7 4.2223 -2.0578 5.5856 12 7 4.7762 -2.7453 6.6734 13 6 5.4421 -2.0969 7.5805 14 6 6.1200 -2.8314 8.6624 15 6 6.7554 -2.1354 9.6934 16 6 7.3886 -2.8290 10.7028 17 6 7.3984 -4.2143 10.6999 18 6 6.7701 -4.9157 9.6895 19 6 6.1326 -4.2348 8.6627 20 8 5.5193 -4.9219 7.6675 21 6 4.2027 -5.1699 7.8161 22 1 3.6646 -4.7471 8.6516 23 6 3.5381 -5.9630 6.8933 24 7 2.2759 -6.2798 7.0863 25 14 4.4350 -6.5820 5.3762 26 1 4.9649 -7.9446 5.6358 27 1 3.4935 -6.6275 4.2287 28 1 5.5596 -5.6660 5.0578 29 6 3.2868 -0.6781 3.2700 30 6 2.8280 -0.0353 2.1389 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6766 -1.7488 -1.2494 38 1 1.6766 -0.2073 -2.1393 39 1 3.1299 -0.7208 -1.2496 40 1 1.0753 -2.5567 0.7327 41 1 1.8887 -3.7254 2.7381 42 1 4.3970 -1.1106 5.4706 43 1 5.4990 -1.0191 7.5415 44 1 6.7505 -1.0554 9.7000 45 1 7.8799 -2.2898 11.4993 46 1 7.8966 -4.7491 11.4951 47 1 6.7788 -5.9956 9.6966 48 1 1.8111 -6.8350 6.4409 49 1 3.9038 -0.1487 3.9807 50 1 3.0865 0.9987 1.9646 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046194287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:32 Heat of formation + Delta-G solvation = 22.731421 kcal Electronic energy + Delta-G solvation = -32411.771069 eV Core-core repulsion = 28177.506584 eV Total energy + Delta-G solvation = -4234.264485 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.39002 -40.67463 -40.00304 -37.95135 -37.44186 -37.02266 -34.02755 -33.91121 -32.23257 -31.70546 -30.94646 -30.08032 -28.22295 -28.10769 -26.74499 -25.60823 -24.28055 -23.25661 -23.13952 -21.90951 -21.51774 -20.16471 -19.83916 -19.27854 -18.41762 -18.08583 -17.04433 -16.74367 -16.31361 -16.15949 -16.07690 -15.92869 -15.79772 -15.30468 -15.15068 -15.14176 -14.86758 -14.62279 -14.40960 -14.25733 -14.04408 -13.87313 -13.65428 -13.59263 -13.40037 -13.00206 -12.81644 -12.78703 -12.64383 -12.53498 -12.51209 -12.42792 -12.14290 -11.84974 -11.83650 -11.73641 -11.49935 -11.43663 -11.01830 -10.70036 -10.54801 -10.23184 -10.04706 -9.81249 -9.49313 -8.96078 -8.14720 -5.76802 -0.31237 0.05357 0.32178 0.56384 1.24164 1.38278 1.48499 1.54945 1.57992 2.06082 2.54194 2.80802 2.96352 3.34065 3.42841 3.63122 3.68440 3.71944 3.79238 3.89750 4.01833 4.06623 4.10686 4.27259 4.30774 4.31421 4.35681 4.44373 4.58443 4.68913 4.73180 4.79114 4.80172 4.83845 4.91837 4.93771 5.01942 5.04018 5.05192 5.05814 5.18626 5.22047 5.27783 5.33911 5.42359 5.43233 5.56016 5.60034 5.64413 5.67154 5.76458 5.84500 6.07981 6.20473 6.37738 6.72561 7.32536 7.58335 8.08383 9.02286 Molecular weight = 366.17amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.002548 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.387443 B =10987.240982 C =12528.949051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.041 4.041 6 C -0.121 4.121 7 C -0.079 4.079 8 C -0.148 4.148 9 C 0.547 3.453 10 O -0.522 6.522 11 N -0.577 5.577 12 N -0.221 5.221 13 C 0.087 3.913 14 C -0.112 4.112 15 C -0.068 4.068 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.175 4.175 19 C 0.117 3.883 20 O -0.282 6.282 21 C -0.295 4.295 22 H 0.036 0.964 23 C 0.041 3.959 24 N -0.948 5.948 25 Si 0.978 3.022 26 H -0.295 1.295 27 H -0.301 1.301 28 H -0.287 1.287 29 C -0.078 4.078 30 C -0.122 4.122 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.142 0.858 41 H 0.105 0.895 42 H 0.394 0.606 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.169 0.831 46 H 0.155 0.845 47 H 0.113 0.887 48 H 0.262 0.738 49 H 0.150 0.850 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 23.043 -10.033 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.197 4.197 5 C -0.042 4.042 6 C -0.139 4.139 7 C -0.098 4.098 8 C -0.153 4.153 9 C 0.336 3.664 10 O -0.396 6.396 11 N -0.322 5.322 12 N -0.025 5.025 13 C -0.122 4.122 14 C -0.115 4.115 15 C -0.089 4.089 16 C -0.155 4.155 17 C -0.106 4.106 18 C -0.194 4.194 19 C 0.070 3.930 20 O -0.195 6.195 21 C -0.371 4.371 22 H 0.053 0.947 23 C -0.153 4.153 24 N -0.596 5.596 25 Si 0.810 3.190 26 H -0.224 1.224 27 H -0.229 1.229 28 H -0.214 1.214 29 C -0.096 4.096 30 C -0.139 4.139 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.123 0.877 42 H 0.235 0.765 43 H 0.177 0.823 44 H 0.186 0.814 45 H 0.187 0.813 46 H 0.172 0.828 47 H 0.131 0.869 48 H 0.071 0.929 49 H 0.167 0.833 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.287 21.254 -10.617 24.142 hybrid contribution -0.074 0.007 -0.361 0.368 sum 4.214 21.261 -10.977 24.296 Atomic orbital electron populations 1.21916 0.92975 1.02199 1.02652 1.19641 0.96223 0.95935 0.91302 1.21992 1.01597 0.93539 1.03057 1.21918 1.01147 1.00243 0.96437 1.20424 0.94565 0.93043 0.96137 1.21077 1.00957 0.95218 0.96656 1.21244 0.95068 0.99696 0.93816 1.19770 1.04189 0.96351 0.94968 1.18965 0.77734 0.86701 0.83003 1.90799 1.55139 1.18136 1.75549 1.46859 1.50435 1.11712 1.23165 1.76070 1.05799 1.24220 0.96409 1.24779 0.95458 0.98670 0.93318 1.19282 1.03149 0.92067 0.97002 1.21463 0.94796 1.01286 0.91314 1.21448 1.00729 0.93637 0.99660 1.21476 0.96837 0.95333 0.96917 1.21641 1.02318 1.00670 0.94736 1.19682 0.93846 0.90882 0.88552 1.83363 1.22409 1.72905 1.40845 1.19511 0.81132 1.27321 1.09182 0.94653 1.24321 0.95049 0.97100 0.98791 1.69716 1.10932 1.41354 1.37592 0.85054 0.77401 0.75563 0.80940 1.22362 1.22891 1.21362 1.21544 0.98086 0.91509 0.98467 1.21474 0.97749 1.01738 0.92929 0.92723 0.90541 0.92888 0.91667 0.90924 0.91646 0.92884 0.90539 0.92740 0.84034 0.87698 0.76463 0.82296 0.81413 0.81317 0.82775 0.86904 0.92907 0.83263 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.28 71.98 0.60 -1.15 16 2 C -0.03 -0.40 0.85 -52.93 -0.05 -0.45 16 3 C -0.14 -1.32 7.13 71.98 0.51 -0.80 16 4 C -0.14 -1.74 8.29 71.98 0.60 -1.14 16 5 C -0.04 -0.79 4.77 -19.81 -0.09 -0.88 16 6 C -0.12 -2.95 8.69 22.23 0.19 -2.76 16 7 C -0.08 -2.64 9.60 22.53 0.22 -2.42 16 8 C -0.15 -4.99 5.87 -20.09 -0.12 -5.11 16 9 C 0.55 24.45 7.89 86.77 0.68 25.13 16 10 O -0.52 -30.12 12.60 -4.02 -0.05 -30.17 16 11 N -0.58 -22.57 6.20 -175.61 -1.09 -23.66 16 12 N -0.22 -10.35 7.62 -52.25 -0.40 -10.75 16 13 C 0.09 3.19 10.74 87.36 0.94 4.13 16 14 C -0.11 -4.20 5.88 -20.03 -0.12 -4.32 16 15 C -0.07 -1.73 9.79 22.53 0.22 -1.51 16 16 C -0.14 -3.09 10.03 22.25 0.22 -2.87 16 17 C -0.09 -2.40 10.03 22.31 0.22 -2.17 16 18 C -0.17 -6.90 9.98 22.36 0.22 -6.67 16 19 C 0.12 5.49 5.61 22.90 0.13 5.62 16 20 O -0.28 -16.52 7.13 -20.79 -0.15 -16.66 16 21 C -0.30 -19.22 8.55 67.92 0.58 -18.64 16 22 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 23 C 0.04 2.78 4.59 84.83 0.39 3.17 16 24 N -0.95 -66.49 13.96 21.61 0.30 -66.19 16 25 Si 0.98 60.08 25.81 68.60 1.77 61.85 16 26 H -0.30 -17.19 7.11 99.48 0.71 -16.48 16 27 H -0.30 -18.62 7.11 99.48 0.71 -17.91 16 28 H -0.29 -18.11 7.11 99.48 0.71 -17.40 16 29 C -0.08 -1.77 9.54 22.53 0.21 -1.56 16 30 C -0.12 -2.16 8.96 22.23 0.20 -1.96 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.73 7.38 -2.39 -0.02 0.71 16 34 H 0.06 0.55 7.51 -2.39 -0.02 0.53 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.55 7.51 -2.39 -0.02 0.53 16 37 H 0.05 0.73 7.37 -2.39 -0.02 0.71 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.14 2.91 7.08 -2.91 -0.02 2.89 16 41 H 0.10 4.12 7.65 -2.91 -0.02 4.10 16 42 H 0.39 10.59 6.72 -213.32 -1.43 9.16 16 43 H 0.16 3.75 8.04 -2.91 -0.02 3.72 16 44 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 46 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 47 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 48 H 0.26 17.65 8.31 -92.71 -0.77 16.88 16 49 H 0.15 2.46 6.42 -2.91 -0.02 2.44 16 50 H 0.17 1.80 5.87 -2.91 -0.02 1.79 16 Total: -1.00 -97.77 410.48 5.68 -92.09 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -0.47 Total: 9.88 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 5.76 Total: -16.38 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -1.19 Total: -100.60 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.20 Total: -46.84 kcal Atomic # 14 Polarization: 60.08 SS G_CDS: 1.77 Total: 61.85 kcal Total: -97.77 5.68 -92.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046194287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.824 kcal (2) G-P(sol) polarization free energy of solvation -97.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds