Wall clock time and date at job start Tue Mar 31 2020 05:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46907 * 109.47093 * 2 1 4 4 C 1.46896 * 110.99597 * 300.31383 * 3 2 1 5 5 C 1.50699 * 109.47277 * 288.76239 * 4 3 2 6 6 H 1.08005 * 120.00168 * 4.20458 * 5 4 3 7 7 C 1.37880 * 120.00170 * 184.20114 * 5 4 3 8 8 N 1.31510 * 119.99882 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99986 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46972 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46672 * 120.00494 * 9 7 5 12 12 H 1.48500 * 109.47231 * 240.00189 * 9 7 5 13 13 C 1.46899 * 111.00180 * 64.26595 * 3 2 1 14 14 N 1.46493 * 109.46852 * 66.04503 * 13 3 2 15 15 N 1.40155 * 126.25089 * 270.28700 * 14 13 3 16 16 C 1.30356 * 108.04374 * 180.17166 * 15 14 13 17 17 C 1.47967 * 125.73470 * 179.85189 * 16 15 14 18 18 C 1.39519 * 120.12465 * 338.86502 * 17 16 15 19 19 C 1.37948 * 119.87763 * 180.02562 * 18 17 16 20 20 C 1.38471 * 120.12290 * 0.02562 * 19 18 17 21 21 Cl 1.73590 * 119.87568 * 179.97438 * 20 19 18 22 22 C 1.38473 * 120.24708 * 0.23920 * 20 19 18 23 23 C 1.37942 * 120.12926 * 359.48192 * 22 20 19 24 24 N 1.38088 * 108.53499 * 359.59013 * 16 15 14 25 25 C 1.46502 * 125.86660 * 180.26550 * 24 16 15 26 26 C 1.34791 * 108.27632 * 0.26269 * 24 16 15 27 27 S 1.71200 * 126.18259 * 180.02562 * 26 24 16 28 28 H 1.09002 * 109.46660 * 65.75997 * 1 2 3 29 29 H 1.08999 * 109.46847 * 185.75577 * 1 2 3 30 30 H 1.08994 * 109.47368 * 305.75634 * 1 2 3 31 31 H 1.08997 * 109.47564 * 239.99765 * 2 1 3 32 32 H 1.09004 * 109.46964 * 119.99301 * 2 1 3 33 33 H 1.09003 * 109.47344 * 48.76110 * 4 3 2 34 34 H 1.09002 * 109.47223 * 168.76276 * 4 3 2 35 35 H 0.97006 * 119.99693 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47084 * 306.05100 * 13 3 2 37 37 H 1.08999 * 109.47147 * 186.05082 * 13 3 2 38 38 H 1.08000 * 120.05889 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.93982 * 180.02562 * 19 18 17 40 40 H 1.08003 * 119.93485 * 179.72238 * 22 20 19 41 41 H 1.08000 * 120.06478 * 180.27468 * 23 22 20 42 42 H 1.08994 * 109.46952 * 83.46777 * 25 24 16 43 43 H 1.08998 * 109.47544 * 203.47239 * 25 24 16 44 44 H 1.09008 * 109.46581 * 323.46742 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5425 2.1120 -1.1839 5 6 2.2541 1.5988 -2.4092 6 1 2.9371 0.7661 -2.3280 7 6 2.0333 2.1923 -3.6340 8 7 1.2021 3.2066 -3.7328 9 14 2.9160 1.5566 -5.1526 10 1 3.7902 0.4168 -4.7762 11 1 1.9162 1.1039 -6.1529 12 1 3.7427 2.6435 -5.7360 13 6 1.6338 2.0799 1.2354 14 7 2.3207 1.4674 2.3751 15 7 1.8492 0.3994 3.1506 16 6 2.7382 0.1440 4.0691 17 6 2.6343 -0.9092 5.1032 18 6 1.3871 -1.4304 5.4490 19 6 1.2961 -2.4118 6.4142 20 6 2.4395 -2.8794 7.0398 21 17 2.3175 -4.1141 8.2539 22 6 3.6793 -2.3619 6.7045 23 6 3.7829 -1.3844 5.7368 24 7 3.7959 1.0176 3.9113 25 6 5.0048 1.0599 4.7377 26 6 3.5251 1.8248 2.8664 27 16 4.5287 3.0770 2.2699 28 1 -0.3633 0.4219 -0.9371 29 1 -0.3633 -1.0225 0.1031 30 1 -0.3634 0.6005 0.8339 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 0.4692 1.9588 -1.2963 34 1 1.7470 3.1759 -1.0639 35 1 1.0471 3.6244 -4.5945 36 1 0.5557 2.0003 1.3754 37 1 1.9143 3.1308 1.1640 38 1 0.4946 -1.0656 4.9626 39 1 0.3313 -2.8162 6.6824 40 1 4.5674 -2.7271 7.1989 41 1 4.7509 -0.9846 5.4729 42 1 5.7176 0.3184 4.3769 43 1 5.4514 2.0524 4.6779 44 1 4.7449 0.8403 5.7733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048290241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:13 Heat of formation + Delta-G solvation = 133.995008 kcal Electronic energy + Delta-G solvation = -27949.163742 eV Core-core repulsion = 24056.503687 eV Total energy + Delta-G solvation = -3892.660055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73252 -39.83634 -37.70840 -37.06525 -35.26853 -33.48997 -32.57607 -31.82735 -30.96516 -29.44162 -28.49253 -27.05518 -25.29585 -23.93093 -23.88080 -23.24711 -22.40294 -21.40552 -19.86554 -18.18640 -17.66615 -16.93322 -16.72558 -16.48192 -16.25015 -15.71083 -15.41309 -15.20637 -14.80684 -14.69151 -14.33838 -14.19468 -14.16960 -13.58926 -13.30577 -13.06543 -12.57188 -12.46111 -12.38010 -12.27105 -12.01725 -11.92602 -11.67033 -11.38229 -11.30066 -11.14853 -11.07412 -10.95996 -10.79413 -10.63488 -10.43309 -10.16075 -9.88460 -9.76466 -9.32241 -9.21773 -8.43795 -7.55580 -7.40092 -7.27124 -6.03278 -4.03644 -0.00207 0.60022 1.18968 1.42764 1.48955 1.67693 2.25106 2.50897 2.97969 3.32935 3.40731 3.45726 3.74238 3.97584 4.15525 4.19321 4.42110 4.44202 4.53834 4.71745 4.79831 4.81522 4.88628 5.05797 5.20941 5.29196 5.33695 5.37122 5.46973 5.52970 5.59134 5.67106 5.70149 5.86645 5.95724 5.97875 6.04210 6.28298 6.35594 6.53614 6.74400 7.07821 7.14782 7.24096 7.71531 7.95003 8.06832 8.41576 9.01486 9.59784 11.07486 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.002287 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.992809 B =12238.332477 C =13273.585326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 N -0.537 5.537 4 C 0.197 3.803 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.283 1.283 13 C 0.301 3.699 14 N -0.353 5.353 15 N -0.256 5.256 16 C 0.296 3.704 17 C -0.023 4.023 18 C -0.057 4.057 19 C -0.107 4.107 20 C -0.017 4.017 21 Cl -0.061 7.061 22 C -0.107 4.107 23 C -0.089 4.089 24 N -0.498 5.498 25 C 0.074 3.926 26 C 0.472 3.528 27 S -0.565 6.565 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.005 0.995 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -13.128 27.037 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.069 4.069 3 N -0.262 5.262 4 C 0.073 3.927 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.209 1.209 13 C 0.092 3.908 14 N -0.146 5.146 15 N -0.077 5.077 16 C 0.019 3.981 17 C -0.026 4.026 18 C -0.077 4.077 19 C -0.126 4.126 20 C -0.045 4.045 21 Cl -0.032 7.032 22 C -0.125 4.125 23 C -0.109 4.109 24 N -0.200 5.200 25 C -0.067 4.067 26 C 0.113 3.887 27 S -0.437 6.437 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.982 -12.527 26.076 28.946 hybrid contribution -0.252 -0.883 -0.265 0.956 sum 0.729 -13.410 25.811 29.096 Atomic orbital electron populations 1.22337 0.98746 1.01062 1.02158 1.22022 0.92557 0.90834 1.01528 1.62243 1.59965 1.02580 1.01397 1.19806 0.94298 0.94021 0.84560 1.21055 1.25394 1.16420 0.91050 0.91925 1.24940 0.95444 0.95004 0.99058 1.69951 1.35963 1.22805 1.24986 0.86426 0.79436 0.78876 0.82604 1.19733 1.21188 1.20914 1.22530 0.93202 0.96135 0.78975 1.49797 1.14257 1.24658 1.25900 1.77460 1.21043 1.04964 1.04255 1.22346 0.85616 0.93754 0.96432 1.17519 0.94994 0.95085 0.94981 1.21213 0.96959 0.94410 0.95126 1.21062 0.98249 0.97080 0.96214 1.21198 0.95236 0.93874 0.94177 1.98403 1.98480 1.52415 1.53870 1.20986 0.96745 0.96800 0.98016 1.21459 0.98300 0.96105 0.94994 1.46084 1.18759 1.27747 1.27373 1.22396 0.83549 1.07208 0.93563 1.23876 0.88238 0.91828 0.84732 1.93448 1.51367 1.26415 1.72424 0.91097 0.93152 0.93636 0.89851 0.93121 0.97706 0.94358 0.92918 0.90926 0.85796 0.83493 0.83763 0.83804 0.83765 0.89473 0.86694 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 9.23 37.16 0.34 -2.81 16 2 C 0.06 1.14 5.81 -3.82 -0.02 1.11 16 3 N -0.54 -11.51 4.80 -239.98 -1.15 -12.66 16 4 C 0.20 4.95 4.56 -4.98 -0.02 4.93 16 5 C -0.50 -13.96 8.65 -34.44 -0.30 -14.26 16 6 H 0.06 1.77 7.31 -52.48 -0.38 1.39 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.30 5.54 5.75 -63.32 -0.36 5.17 16 14 N -0.35 -5.92 3.34 -65.02 -0.22 -6.14 16 15 N -0.26 -3.62 11.23 32.58 0.37 -3.26 16 16 C 0.30 3.41 7.64 -153.97 -1.18 2.24 16 17 C -0.02 -0.18 5.85 -104.96 -0.61 -0.80 16 18 C -0.06 -0.41 9.69 -39.21 -0.38 -0.79 16 19 C -0.11 -0.64 9.81 -39.60 -0.39 -1.02 16 20 C -0.02 -0.10 6.32 -39.41 -0.25 -0.35 16 21 Cl -0.06 -0.36 28.95 -51.86 -1.50 -1.86 16 22 C -0.11 -0.56 9.81 -39.60 -0.39 -0.94 16 23 C -0.09 -0.53 8.57 -39.21 -0.34 -0.86 16 24 N -0.50 -6.11 3.16 -122.57 -0.39 -6.49 16 25 C 0.07 0.57 9.12 59.85 0.55 1.12 16 26 C 0.47 7.90 7.85 -86.80 -0.68 7.22 16 27 S -0.56 -11.43 29.45 -107.50 -3.17 -14.59 16 28 H 0.07 1.37 6.48 -51.93 -0.34 1.03 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.73 6.13 -51.93 -0.32 0.41 16 31 H 0.08 1.75 7.15 -51.93 -0.37 1.38 16 32 H 0.05 0.93 6.61 -51.93 -0.34 0.59 16 33 H 0.01 0.14 5.89 -51.93 -0.31 -0.17 16 34 H 0.04 1.05 7.82 -51.93 -0.41 0.64 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.07 1.23 6.04 -51.93 -0.31 0.91 16 37 H 0.12 2.41 7.40 -51.93 -0.38 2.02 16 38 H 0.15 1.02 7.97 -52.49 -0.42 0.60 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.14 0.61 4.92 -52.49 -0.26 0.35 16 42 H 0.09 0.53 7.58 -51.93 -0.39 0.13 16 43 H 0.11 1.01 7.43 -51.93 -0.39 0.62 16 44 H 0.09 0.41 6.57 -51.92 -0.34 0.07 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -34.08 387.04 -14.00 -48.08 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.36 Total: -1.66 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -4.13 Total: 1.46 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.65 Total: -54.17 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -11.43 SS G_CDS: -3.17 Total: -14.59 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.08 -14.00 -48.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048290241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.077 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds