Wall clock time and date at job start Tue Mar 31 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46907 * 109.47093 * 2 1 4 4 C 1.46896 * 110.99597 * 300.31383 * 3 2 1 5 5 C 1.50699 * 109.47277 * 288.76239 * 4 3 2 6 6 H 1.08005 * 120.00168 * 4.20458 * 5 4 3 7 7 C 1.37880 * 120.00170 * 184.20114 * 5 4 3 8 8 N 1.31510 * 119.99882 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99986 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46972 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46672 * 120.00494 * 9 7 5 12 12 H 1.48500 * 109.47231 * 240.00189 * 9 7 5 13 13 C 1.46899 * 111.00180 * 64.26595 * 3 2 1 14 14 N 1.46493 * 109.46852 * 66.04503 * 13 3 2 15 15 N 1.40155 * 126.25089 * 270.28700 * 14 13 3 16 16 C 1.30356 * 108.04374 * 180.17166 * 15 14 13 17 17 C 1.47967 * 125.73470 * 179.85189 * 16 15 14 18 18 C 1.39519 * 120.12465 * 338.86502 * 17 16 15 19 19 C 1.37948 * 119.87763 * 180.02562 * 18 17 16 20 20 C 1.38471 * 120.12290 * 0.02562 * 19 18 17 21 21 Cl 1.73590 * 119.87568 * 179.97438 * 20 19 18 22 22 C 1.38473 * 120.24708 * 0.23920 * 20 19 18 23 23 C 1.37942 * 120.12926 * 359.48192 * 22 20 19 24 24 N 1.38088 * 108.53499 * 359.59013 * 16 15 14 25 25 C 1.46502 * 125.86660 * 180.26550 * 24 16 15 26 26 C 1.34791 * 108.27632 * 0.26269 * 24 16 15 27 27 S 1.71200 * 126.18259 * 180.02562 * 26 24 16 28 28 H 1.09002 * 109.46660 * 65.75997 * 1 2 3 29 29 H 1.08999 * 109.46847 * 185.75577 * 1 2 3 30 30 H 1.08994 * 109.47368 * 305.75634 * 1 2 3 31 31 H 1.08997 * 109.47564 * 239.99765 * 2 1 3 32 32 H 1.09004 * 109.46964 * 119.99301 * 2 1 3 33 33 H 1.09003 * 109.47344 * 48.76110 * 4 3 2 34 34 H 1.09002 * 109.47223 * 168.76276 * 4 3 2 35 35 H 0.97006 * 119.99693 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47084 * 306.05100 * 13 3 2 37 37 H 1.08999 * 109.47147 * 186.05082 * 13 3 2 38 38 H 1.08000 * 120.05889 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.93982 * 180.02562 * 19 18 17 40 40 H 1.08003 * 119.93485 * 179.72238 * 22 20 19 41 41 H 1.08000 * 120.06478 * 180.27468 * 23 22 20 42 42 H 1.08994 * 109.46952 * 83.46777 * 25 24 16 43 43 H 1.08998 * 109.47544 * 203.47239 * 25 24 16 44 44 H 1.09008 * 109.46581 * 323.46742 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5425 2.1120 -1.1839 5 6 2.2541 1.5988 -2.4092 6 1 2.9371 0.7661 -2.3280 7 6 2.0333 2.1923 -3.6340 8 7 1.2021 3.2066 -3.7328 9 14 2.9160 1.5566 -5.1526 10 1 3.7902 0.4168 -4.7762 11 1 1.9162 1.1039 -6.1529 12 1 3.7427 2.6435 -5.7360 13 6 1.6338 2.0799 1.2354 14 7 2.3207 1.4674 2.3751 15 7 1.8492 0.3994 3.1506 16 6 2.7382 0.1440 4.0691 17 6 2.6343 -0.9092 5.1032 18 6 1.3871 -1.4304 5.4490 19 6 1.2961 -2.4118 6.4142 20 6 2.4395 -2.8794 7.0398 21 17 2.3175 -4.1141 8.2539 22 6 3.6793 -2.3619 6.7045 23 6 3.7829 -1.3844 5.7368 24 7 3.7959 1.0176 3.9113 25 6 5.0048 1.0599 4.7377 26 6 3.5251 1.8248 2.8664 27 16 4.5287 3.0770 2.2699 28 1 -0.3633 0.4219 -0.9371 29 1 -0.3633 -1.0225 0.1031 30 1 -0.3634 0.6005 0.8339 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 0.4692 1.9588 -1.2963 34 1 1.7470 3.1759 -1.0639 35 1 1.0471 3.6244 -4.5945 36 1 0.5557 2.0003 1.3754 37 1 1.9143 3.1308 1.1640 38 1 0.4946 -1.0656 4.9626 39 1 0.3313 -2.8162 6.6824 40 1 4.5674 -2.7271 7.1989 41 1 4.7509 -0.9846 5.4729 42 1 5.7176 0.3184 4.3769 43 1 5.4514 2.0524 4.6779 44 1 4.7449 0.8403 5.7733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048290241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:12 Heat of formation + Delta-G solvation = 115.508026 kcal Electronic energy + Delta-G solvation = -27949.965398 eV Core-core repulsion = 24056.503687 eV Total energy + Delta-G solvation = -3893.461711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.88208 -40.39495 -39.26414 -37.56959 -36.43620 -34.79724 -34.33647 -32.35372 -31.88018 -30.98478 -29.68931 -28.52615 -26.69181 -25.20248 -24.74912 -24.59009 -23.47730 -22.22675 -21.51147 -19.24682 -18.44912 -18.30196 -18.10989 -17.73624 -17.34657 -16.90940 -16.78247 -16.30561 -16.26514 -15.95747 -15.28138 -14.88834 -14.80853 -14.65800 -14.41072 -14.30184 -13.96966 -13.71718 -13.39731 -13.23815 -13.14939 -13.01423 -12.88754 -12.74055 -12.66616 -12.57097 -12.52663 -12.45137 -12.01835 -11.97904 -11.84571 -11.67908 -11.57353 -11.34254 -10.60210 -10.21342 -9.85328 -9.22721 -8.95729 -8.81095 -8.20098 -6.28119 -0.64552 -0.13597 0.14544 0.17256 0.82791 0.99645 1.05219 1.34424 1.38775 1.41408 1.53329 2.39748 2.44323 2.78981 3.04221 3.12582 3.19774 3.52002 3.64876 3.75395 3.87595 4.05255 4.07990 4.11510 4.21306 4.23812 4.33624 4.42708 4.45108 4.52387 4.66557 4.73987 4.79556 4.85420 4.88024 4.95499 5.05539 5.09861 5.15070 5.23876 5.28773 5.38402 5.51343 5.62147 5.94025 6.00628 6.21048 6.40958 6.82854 7.39508 8.90429 Molecular weight = 366.10amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.002287 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.992809 B =12238.332477 C =13273.585326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.065 3.935 3 N -0.553 5.553 4 C 0.216 3.784 5 C -0.515 4.515 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.281 1.281 13 C 0.311 3.689 14 N -0.359 5.359 15 N -0.277 5.277 16 C 0.320 3.680 17 C -0.045 4.045 18 C -0.057 4.057 19 C -0.108 4.108 20 C -0.017 4.017 21 Cl -0.058 7.058 22 C -0.102 4.102 23 C -0.077 4.077 24 N -0.483 5.483 25 C 0.061 3.939 26 C 0.478 3.522 27 S -0.655 6.655 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.064 0.936 33 H -0.002 1.002 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -16.183 29.455 33.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.062 4.062 3 N -0.278 5.278 4 C 0.091 3.909 5 C -0.554 4.554 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.200 1.200 12 H -0.207 1.207 13 C 0.101 3.899 14 N -0.149 5.149 15 N -0.098 5.098 16 C 0.044 3.956 17 C -0.049 4.049 18 C -0.077 4.077 19 C -0.126 4.126 20 C -0.044 4.044 21 Cl -0.029 7.029 22 C -0.121 4.121 23 C -0.097 4.097 24 N -0.182 5.182 25 C -0.078 4.078 26 C 0.114 3.886 27 S -0.528 6.528 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.016 0.984 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.182 0.818 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.267 -15.629 28.560 32.581 hybrid contribution -0.376 -0.155 -0.719 0.826 sum 0.892 -15.784 27.841 32.016 Atomic orbital electron populations 1.22190 0.96889 1.02747 1.01171 1.21947 0.94028 0.89270 1.00997 1.62022 1.60901 1.03498 1.01405 1.19364 0.93524 0.92428 0.85592 1.21311 1.25379 1.16260 0.92448 0.92844 1.25765 0.96139 0.95176 1.02066 1.70055 1.37143 1.23834 1.25876 0.85414 0.78433 0.78275 0.78968 1.19363 1.19956 1.20700 1.22227 0.94126 0.95124 0.78388 1.49535 1.14183 1.25498 1.25680 1.77527 1.22112 1.04740 1.05432 1.23024 0.84007 0.92919 0.95618 1.17585 0.96464 0.95422 0.95420 1.21250 0.96617 0.94520 0.95324 1.21210 0.99162 0.96588 0.95676 1.21405 0.95678 0.93549 0.93809 1.98415 1.98494 1.52293 1.53728 1.21258 0.97352 0.96029 0.97437 1.21646 0.98240 0.95639 0.94177 1.46342 1.19869 1.26107 1.25875 1.22907 0.82349 1.07520 0.95055 1.23363 0.87715 0.91689 0.85820 1.93552 1.53559 1.30371 1.75301 0.93664 0.90470 0.92501 0.92023 0.91798 0.98442 0.97520 0.92645 0.89156 0.87667 0.83642 0.82233 0.81365 0.81847 0.87033 0.87881 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.76 9.23 71.98 0.66 -5.10 16 2 C 0.07 2.53 5.81 86.30 0.50 3.03 16 3 N -0.55 -24.51 4.80 -913.16 -4.38 -28.89 16 4 C 0.22 11.39 4.56 85.56 0.39 11.78 16 5 C -0.52 -29.69 8.65 25.60 0.22 -29.46 16 6 H 0.05 3.11 7.31 -2.91 -0.02 3.09 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 9 Si 0.96 45.61 29.54 68.60 2.03 47.63 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 C 0.31 11.83 5.75 170.81 0.98 12.81 16 14 N -0.36 -12.04 3.34 -359.61 -1.20 -13.25 16 15 N -0.28 -7.46 11.23 -50.84 -0.57 -8.03 16 16 C 0.32 6.69 7.64 136.34 1.04 7.73 16 17 C -0.05 -0.60 5.85 -20.08 -0.12 -0.72 16 18 C -0.06 -0.65 9.69 22.51 0.22 -0.43 16 19 C -0.11 -0.93 9.81 22.26 0.22 -0.71 16 20 C -0.02 -0.14 6.32 22.38 0.14 0.00 16 21 Cl -0.06 -0.51 28.95 -2.72 -0.08 -0.59 16 22 C -0.10 -0.61 9.81 22.26 0.22 -0.40 16 23 C -0.08 -0.59 8.57 22.51 0.19 -0.39 16 24 N -0.48 -11.08 3.16 -541.69 -1.71 -12.79 16 25 C 0.06 0.77 9.12 127.77 1.17 1.94 16 26 C 0.48 16.14 7.85 179.01 1.41 17.54 16 27 S -0.65 -27.84 29.45 -56.49 -1.66 -29.50 16 28 H 0.04 1.76 6.48 -2.39 -0.02 1.74 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.77 6.13 -2.39 -0.01 1.75 16 31 H 0.06 2.63 7.15 -2.39 -0.02 2.62 16 32 H 0.06 2.29 6.61 -2.39 -0.02 2.28 16 33 H 0.00 -0.11 5.89 -2.39 -0.01 -0.12 16 34 H 0.01 0.39 7.82 -2.39 -0.02 0.37 16 35 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 36 H 0.09 3.08 6.04 -2.39 -0.01 3.07 16 37 H 0.11 4.39 7.40 -2.39 -0.02 4.37 16 38 H 0.15 1.70 7.97 -2.91 -0.02 1.68 16 39 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.17 0.23 8.06 -2.91 -0.02 0.20 16 41 H 0.16 0.57 4.92 -2.91 -0.01 0.55 16 42 H 0.11 0.96 7.58 -2.39 -0.02 0.94 16 43 H 0.10 1.70 7.43 -2.39 -0.02 1.68 16 44 H 0.13 0.63 6.57 -2.38 -0.02 0.61 16 Total: -1.00 -77.85 387.04 1.45 -76.40 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.05 Total: 6.12 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 7.71 Total: 18.49 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -7.58 Total: -118.55 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: -27.84 SS G_CDS: -1.66 Total: -29.50 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -77.85 1.45 -76.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048290241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.908 kcal (2) G-P(sol) polarization free energy of solvation -77.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds