Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31588 * 122.23125 * 2 1 4 4 C 1.29950 * 117.13886 * 179.97438 * 3 2 1 5 5 N 1.38886 * 125.36465 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00174 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99651 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00421 * 179.97438 * 6 5 4 9 9 N 1.46497 * 109.47254 * 179.97438 * 8 6 5 10 10 C 1.34773 * 120.00174 * 180.02562 * 9 8 6 11 11 O 1.21618 * 120.00100 * 359.97438 * 10 9 8 12 12 C 1.47376 * 120.00312 * 179.97438 * 10 9 8 13 13 C 1.47019 * 127.19544 * 180.28123 * 12 10 9 14 14 C 1.34177 * 105.95809 * 180.17417 * 13 12 10 15 15 O 1.34214 * 109.12112 * 359.60541 * 14 13 12 16 16 C 1.33655 * 110.90867 * 0.26473 * 15 14 13 17 17 S 1.76143 * 109.26862 * 0.26169 * 4 3 2 18 18 C 1.34652 * 122.23086 * 179.97438 * 2 1 3 19 19 S 1.76205 * 125.92842 * 359.97438 * 18 2 1 20 20 C 1.76207 * 99.99850 * 180.02562 * 19 18 2 21 21 H 1.07994 * 119.99656 * 0.02562 * 20 19 18 22 22 C 1.38426 * 119.99805 * 180.02562 * 20 19 18 23 23 N 1.31820 * 120.00262 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46892 * 89.99961 * 24 22 20 26 26 H 1.48501 * 109.47325 * 210.00345 * 24 22 20 27 27 H 1.48497 * 109.46980 * 330.00256 * 24 22 20 28 28 H 1.08998 * 109.47543 * 90.01975 * 1 2 3 29 29 H 1.08999 * 109.47339 * 210.02402 * 1 2 3 30 30 H 1.09007 * 109.46961 * 330.02519 * 1 2 3 31 31 H 0.97004 * 120.00354 * 359.97438 * 5 4 3 32 32 H 1.09003 * 109.46482 * 60.00113 * 8 6 5 33 33 H 1.08996 * 109.46795 * 299.99983 * 8 6 5 34 34 H 0.97003 * 120.00150 * 0.02562 * 9 8 6 35 35 H 1.08005 * 127.02536 * 0.08201 * 13 12 10 36 36 H 1.08002 * 125.44341 * 179.87398 * 14 13 12 37 37 H 1.08001 * 125.79936 * 179.97438 * 16 15 14 38 38 H 0.96999 * 119.99839 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4043 2.0545 0.0011 6 6 5.7297 1.8100 0.0011 7 8 6.1354 0.6669 0.0010 8 6 6.7076 2.9566 0.0012 9 7 8.0754 2.4319 0.0017 10 6 9.1226 3.2803 0.0024 11 8 8.9322 4.4814 0.0021 12 6 10.4986 2.7525 0.0036 13 6 11.7479 3.5276 0.0102 14 6 12.7415 2.6259 0.0048 15 8 12.2149 1.3914 0.0044 16 6 10.8794 1.4425 0.0036 17 16 3.9345 -0.7100 -0.0065 18 6 2.2251 -1.1390 0.0005 19 16 1.5695 -2.7746 0.0019 20 6 3.0665 -3.7042 0.0027 21 1 4.0186 -3.1944 0.0027 22 6 3.0220 -5.0877 0.0034 23 7 1.8599 -5.7098 0.0028 24 14 4.6089 -6.0732 0.0035 25 1 5.0296 -6.3337 1.4036 26 1 4.3897 -7.3647 -0.6959 27 1 5.6689 -5.3046 -0.6970 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5135 31 1 4.0799 2.9687 0.0008 32 1 6.5524 3.5663 0.8912 33 1 6.5524 3.5665 -0.8888 34 1 8.2274 1.4739 0.0016 35 1 11.8459 4.6032 0.0164 36 1 13.7966 2.8566 0.0054 37 1 10.2146 0.5914 0.0028 38 1 1.8288 -6.6793 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048363700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = -13.083283 kcal Electronic energy + Delta-G solvation = -26192.274006 eV Core-core repulsion = 22061.728107 eV Total energy + Delta-G solvation = -4130.545899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.049 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.91959 -40.62265 -39.42820 -38.58580 -35.13535 -34.73341 -33.25232 -32.88246 -30.92264 -30.36313 -28.32885 -27.12814 -25.83004 -24.30594 -23.08665 -21.86043 -21.28317 -20.58088 -19.94259 -18.98321 -18.12329 -17.73960 -16.92640 -16.60146 -16.33814 -16.25807 -16.14660 -15.68583 -15.22402 -15.16396 -15.02173 -14.36084 -14.13371 -13.98948 -13.50500 -13.28277 -13.26806 -13.04367 -12.78105 -12.74127 -12.14035 -11.93677 -11.45064 -11.31882 -11.16682 -10.95873 -10.70450 -10.48816 -10.32324 -10.22364 -10.08199 -9.63229 -9.58235 -9.20789 -9.15469 -8.83430 -8.73580 -7.89145 -6.66004 -6.57865 -4.34196 0.94859 1.25316 1.68456 1.77469 2.22484 2.29716 2.47235 2.56671 3.00031 3.00340 3.04541 3.05430 3.12652 3.28792 3.53773 3.92011 4.16437 4.25949 4.28767 4.66378 4.76823 4.88844 4.91352 4.97051 5.11893 5.13793 5.26296 5.51260 5.82096 5.88689 5.92075 6.02733 6.18900 6.37418 6.40472 6.54080 6.84267 7.01251 7.08490 7.26808 7.71516 7.80883 7.97660 8.43252 8.82286 10.39638 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.002415 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.037356 B =11592.932417 C =14354.515495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.018 3.982 3 N -0.470 5.470 4 C 0.181 3.819 5 N -0.607 5.607 6 C 0.501 3.499 7 O -0.506 6.506 8 C 0.113 3.887 9 N -0.716 5.716 10 C 0.594 3.406 11 O -0.536 6.536 12 C -0.239 4.239 13 C -0.164 4.164 14 C -0.041 4.041 15 O -0.172 6.172 16 C 0.030 3.970 17 S 0.201 5.799 18 C -0.249 4.249 19 S 0.155 5.845 20 C -0.558 4.558 21 H 0.089 0.911 22 C 0.082 3.918 23 N -0.861 5.861 24 Si 0.925 3.075 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.265 1.265 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.418 0.582 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.412 0.588 35 H 0.160 0.840 36 H 0.210 0.790 37 H 0.214 0.786 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.330 15.021 0.017 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.191 5.191 4 C -0.190 4.190 5 N -0.256 5.256 6 C 0.286 3.714 7 O -0.381 6.381 8 C -0.015 4.015 9 N -0.372 5.372 10 C 0.382 3.618 11 O -0.414 6.414 12 C -0.244 4.244 13 C -0.184 4.184 14 C -0.107 4.107 15 O -0.067 6.067 16 C -0.041 4.041 17 S 0.445 5.555 18 C -0.486 4.486 19 S 0.406 5.594 20 C -0.706 4.706 21 H 0.107 0.893 22 C -0.129 4.129 23 N -0.494 5.494 24 Si 0.750 3.250 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.189 1.189 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.256 0.744 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.250 0.750 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.231 0.769 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.120 13.995 0.006 19.880 hybrid contribution 1.023 0.150 0.007 1.034 sum 15.143 14.145 0.013 20.721 Atomic orbital electron populations 1.20124 0.87966 1.02180 1.01855 1.19031 0.96743 0.84520 1.12151 1.65788 1.02807 1.32463 1.18024 1.23687 0.89863 0.92701 1.12770 1.42156 1.04093 1.08507 1.70837 1.20632 0.82443 0.91185 0.77150 1.90700 1.76902 1.22219 1.48256 1.20912 0.80866 0.93902 1.05780 1.45513 1.04278 1.11234 1.76161 1.17182 0.83111 0.85748 0.75784 1.90802 1.85884 1.14758 1.49950 1.21396 0.94168 0.93581 1.15213 1.22772 0.89533 1.00937 1.05135 1.23991 0.99668 0.80394 1.06621 1.83826 1.20368 1.31977 1.70532 1.24622 0.81913 0.98314 0.99210 1.85754 1.01910 0.95281 1.72600 1.28791 1.01186 1.06821 1.11773 1.83114 1.10982 0.84305 1.81007 1.23264 0.93566 0.94057 1.59749 0.89315 1.25040 0.98324 0.96683 0.92869 1.70013 1.24422 1.10406 1.44588 0.86020 0.81166 0.78797 0.79025 1.19593 1.20242 1.18900 0.91823 0.91017 0.91867 0.74413 0.87419 0.87416 0.74967 0.82198 0.77385 0.76909 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.02 36.00 0.36 -0.68 16 2 C 0.02 0.37 6.73 -83.97 -0.57 -0.19 16 3 N -0.47 -8.97 10.55 -9.79 -0.10 -9.07 16 4 C 0.18 3.23 8.40 -87.20 -0.73 2.50 16 5 N -0.61 -7.80 5.40 -11.78 -0.06 -7.87 16 6 C 0.50 6.06 7.86 -10.98 -0.09 5.97 16 7 O -0.51 -7.77 13.19 5.55 0.07 -7.70 16 8 C 0.11 1.00 6.15 -5.20 -0.03 0.96 16 9 N -0.72 -6.86 5.52 -62.58 -0.35 -7.20 16 10 C 0.59 6.57 7.81 -12.54 -0.10 6.47 16 11 O -0.54 -7.50 16.98 5.26 0.09 -7.41 16 12 C -0.24 -2.27 6.31 -103.28 -0.65 -2.93 16 13 C -0.16 -1.36 11.01 -37.46 -0.41 -1.78 16 14 C -0.04 -0.26 12.03 29.30 0.35 0.09 16 15 O -0.17 -1.35 10.52 7.65 0.08 -1.27 16 16 C 0.03 0.23 11.61 30.08 0.35 0.58 16 17 S 0.20 4.16 18.35 -107.50 -1.97 2.19 16 18 C -0.25 -5.52 6.67 29.46 0.20 -5.33 16 19 S 0.15 3.78 20.74 -107.50 -2.23 1.55 16 20 C -0.56 -14.72 9.26 30.80 0.29 -14.43 16 21 H 0.09 2.31 5.97 -52.49 -0.31 2.00 16 22 C 0.08 2.13 5.49 -17.49 -0.10 2.04 16 23 N -0.86 -23.20 13.22 55.47 0.73 -22.46 16 24 Si 0.93 20.04 29.55 -169.99 -5.02 15.02 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 30 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.42 3.90 8.82 -40.82 -0.36 3.54 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.41 3.67 6.41 -40.82 -0.26 3.41 16 35 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.21 1.01 7.47 -52.49 -0.39 0.62 16 38 H 0.28 6.94 8.32 -40.82 -0.34 6.60 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -34.03 367.76 -7.73 -41.76 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.38 Total: 3.65 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.13 Total: -6.73 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.22 Total: -46.60 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.24 Total: -16.38 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 7.94 SS G_CDS: -4.20 Total: 3.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.03 -7.73 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048363700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.679 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds