Wall clock time and date at job start Tue Mar 31 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31588 * 122.23125 * 2 1 4 4 C 1.29950 * 117.13886 * 179.97438 * 3 2 1 5 5 N 1.38886 * 125.36465 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00174 * 180.02562 * 5 4 3 7 7 O 1.21288 * 119.99651 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00421 * 179.97438 * 6 5 4 9 9 N 1.46497 * 109.47254 * 179.97438 * 8 6 5 10 10 C 1.34773 * 120.00174 * 180.02562 * 9 8 6 11 11 O 1.21618 * 120.00100 * 359.97438 * 10 9 8 12 12 C 1.47376 * 120.00312 * 179.97438 * 10 9 8 13 13 C 1.47019 * 127.19544 * 180.28123 * 12 10 9 14 14 C 1.34177 * 105.95809 * 180.17417 * 13 12 10 15 15 O 1.34214 * 109.12112 * 359.60541 * 14 13 12 16 16 C 1.33655 * 110.90867 * 0.26473 * 15 14 13 17 17 S 1.76143 * 109.26862 * 0.26169 * 4 3 2 18 18 C 1.34652 * 122.23086 * 179.97438 * 2 1 3 19 19 S 1.76205 * 125.92842 * 359.97438 * 18 2 1 20 20 C 1.76207 * 99.99850 * 180.02562 * 19 18 2 21 21 H 1.07994 * 119.99656 * 0.02562 * 20 19 18 22 22 C 1.38426 * 119.99805 * 180.02562 * 20 19 18 23 23 N 1.31820 * 120.00262 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46892 * 89.99961 * 24 22 20 26 26 H 1.48501 * 109.47325 * 210.00345 * 24 22 20 27 27 H 1.48497 * 109.46980 * 330.00256 * 24 22 20 28 28 H 1.08998 * 109.47543 * 90.01975 * 1 2 3 29 29 H 1.08999 * 109.47339 * 210.02402 * 1 2 3 30 30 H 1.09007 * 109.46961 * 330.02519 * 1 2 3 31 31 H 0.97004 * 120.00354 * 359.97438 * 5 4 3 32 32 H 1.09003 * 109.46482 * 60.00113 * 8 6 5 33 33 H 1.08996 * 109.46795 * 299.99983 * 8 6 5 34 34 H 0.97003 * 120.00150 * 0.02562 * 9 8 6 35 35 H 1.08005 * 127.02536 * 0.08201 * 13 12 10 36 36 H 1.08002 * 125.44341 * 179.87398 * 14 13 12 37 37 H 1.08001 * 125.79936 * 179.97438 * 16 15 14 38 38 H 0.96999 * 119.99839 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 0.0005 5 7 4.4043 2.0545 0.0011 6 6 5.7297 1.8100 0.0011 7 8 6.1354 0.6669 0.0010 8 6 6.7076 2.9566 0.0012 9 7 8.0754 2.4319 0.0017 10 6 9.1226 3.2803 0.0024 11 8 8.9322 4.4814 0.0021 12 6 10.4986 2.7525 0.0036 13 6 11.7479 3.5276 0.0102 14 6 12.7415 2.6259 0.0048 15 8 12.2149 1.3914 0.0044 16 6 10.8794 1.4425 0.0036 17 16 3.9345 -0.7100 -0.0065 18 6 2.2251 -1.1390 0.0005 19 16 1.5695 -2.7746 0.0019 20 6 3.0665 -3.7042 0.0027 21 1 4.0186 -3.1944 0.0027 22 6 3.0220 -5.0877 0.0034 23 7 1.8599 -5.7098 0.0028 24 14 4.6089 -6.0732 0.0035 25 1 5.0296 -6.3337 1.4036 26 1 4.3897 -7.3647 -0.6959 27 1 5.6689 -5.3046 -0.6970 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5135 31 1 4.0799 2.9687 0.0008 32 1 6.5524 3.5663 0.8912 33 1 6.5524 3.5665 -0.8888 34 1 8.2274 1.4739 0.0016 35 1 11.8459 4.6032 0.0164 36 1 13.7966 2.8566 0.0054 37 1 10.2146 0.5914 0.0028 38 1 1.8288 -6.6793 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048363700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:49 Heat of formation + Delta-G solvation = -37.691830 kcal Electronic energy + Delta-G solvation = -26193.341113 eV Core-core repulsion = 22061.728107 eV Total energy + Delta-G solvation = -4131.613006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.049 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.49952 -41.72768 -40.49239 -39.99235 -36.32011 -35.69851 -34.80348 -33.88362 -32.23165 -31.09945 -29.23366 -28.71549 -27.70356 -25.37456 -24.11774 -22.55395 -22.40000 -21.45826 -21.21480 -20.05862 -19.42752 -19.16454 -18.02324 -17.58585 -17.40014 -17.10442 -17.05939 -17.04297 -16.86996 -16.10367 -16.01993 -15.73022 -15.45112 -14.98154 -14.90756 -14.38862 -14.29677 -13.97752 -13.84501 -13.46406 -13.39526 -13.35084 -13.27337 -13.05548 -12.87272 -12.40707 -12.15221 -12.02769 -11.46061 -11.37505 -11.34476 -10.89061 -10.81270 -10.49562 -10.47759 -10.37976 -9.76511 -9.51753 -8.56438 -8.37351 -6.29272 -0.25509 0.20620 0.29582 0.81288 1.05943 1.11956 1.23470 1.29351 1.35975 1.44120 1.59072 1.99889 2.01460 2.14149 2.18493 2.23821 2.83145 3.10554 3.20316 3.59278 3.74813 3.76583 4.06370 4.19974 4.26685 4.43814 4.54749 4.66291 4.74538 4.85407 4.95715 4.96895 5.03117 5.07092 5.30394 5.33279 5.46237 5.84079 5.97245 6.02948 6.30417 6.62147 6.85702 6.88146 6.99899 8.51088 Molecular weight = 367.05amu Principal moments of inertia in cm(-1) A = 0.010062 B = 0.002415 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.037356 B =11592.932417 C =14354.515495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.036 3.964 3 N -0.481 5.481 4 C 0.223 3.777 5 N -0.596 5.596 6 C 0.509 3.491 7 O -0.532 6.532 8 C 0.120 3.880 9 N -0.713 5.713 10 C 0.596 3.404 11 O -0.571 6.571 12 C -0.269 4.269 13 C -0.192 4.192 14 C -0.026 4.026 15 O -0.179 6.179 16 C 0.040 3.960 17 S 0.170 5.830 18 C -0.281 4.281 19 S 0.098 5.902 20 C -0.574 4.574 21 H 0.083 0.917 22 C 0.034 3.966 23 N -0.896 5.896 24 Si 0.986 3.014 25 H -0.264 1.264 26 H -0.267 1.267 27 H -0.263 1.263 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.440 0.560 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.416 0.584 35 H 0.161 0.839 36 H 0.247 0.753 37 H 0.237 0.763 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.269 16.915 0.002 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 N -0.203 5.203 4 C -0.150 4.150 5 N -0.249 5.249 6 C 0.296 3.704 7 O -0.407 6.407 8 C -0.006 4.006 9 N -0.368 5.368 10 C 0.385 3.615 11 O -0.452 6.452 12 C -0.274 4.274 13 C -0.211 4.211 14 C -0.091 4.091 15 O -0.074 6.074 16 C -0.031 4.031 17 S 0.414 5.586 18 C -0.516 4.516 19 S 0.346 5.654 20 C -0.723 4.723 21 H 0.101 0.899 22 C -0.173 4.173 23 N -0.531 5.531 24 Si 0.808 3.192 25 H -0.189 1.189 26 H -0.192 1.192 27 H -0.187 1.187 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.282 0.718 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.255 0.745 35 H 0.179 0.821 36 H 0.263 0.737 37 H 0.253 0.747 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.074 15.944 -0.009 22.640 hybrid contribution 0.560 -0.066 0.010 0.564 sum 16.634 15.878 0.001 22.996 Atomic orbital electron populations 1.20245 0.85846 1.03109 1.03056 1.19662 0.98368 0.84190 1.08335 1.65999 1.02835 1.31402 1.20019 1.24058 0.90175 0.92973 1.07775 1.42294 1.03722 1.08349 1.70486 1.21293 0.82244 0.91607 0.75246 1.90709 1.77171 1.23899 1.48961 1.21036 0.79397 0.92306 1.07888 1.45516 1.04345 1.11350 1.75612 1.17368 0.83783 0.85309 0.75010 1.90778 1.86398 1.16089 1.51925 1.21485 0.93856 0.94760 1.17269 1.22967 0.89815 1.01499 1.06849 1.24679 1.00914 0.79316 1.04191 1.83858 1.20445 1.32717 1.70359 1.25023 0.82134 0.98330 0.97565 1.85876 1.01945 0.97614 1.73156 1.28603 1.01888 1.05969 1.15189 1.82981 1.11351 0.86299 1.84768 1.23451 0.93847 0.94766 1.60204 0.89865 1.25913 1.01419 0.97512 0.92503 1.70101 1.26217 1.10717 1.46064 0.85113 0.77275 0.77549 0.79313 1.18851 1.19172 1.18745 0.90382 0.91414 0.89542 0.71823 0.85208 0.85209 0.74531 0.82126 0.73690 0.74703 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.06 10.02 71.23 0.71 -1.34 16 2 C 0.04 1.43 6.73 41.77 0.28 1.71 16 3 N -0.48 -17.33 10.55 -184.88 -1.95 -19.28 16 4 C 0.22 7.52 8.40 179.15 1.50 9.02 16 5 N -0.60 -13.47 5.40 -309.57 -1.67 -15.14 16 6 C 0.51 10.88 7.86 87.66 0.69 11.57 16 7 O -0.53 -15.33 13.19 -3.05 -0.04 -15.37 16 8 C 0.12 1.74 6.15 85.63 0.53 2.27 16 9 N -0.71 -12.12 5.52 -470.16 -2.59 -14.71 16 10 C 0.60 12.36 7.81 86.65 0.68 13.03 16 11 O -0.57 -15.34 16.98 -4.09 -0.07 -15.41 16 12 C -0.27 -4.79 6.31 -18.99 -0.12 -4.91 16 13 C -0.19 -2.96 11.01 23.65 0.26 -2.70 16 14 C -0.03 -0.27 12.03 66.89 0.80 0.53 16 15 O -0.18 -2.42 10.52 4.46 0.05 -2.37 16 16 C 0.04 0.54 11.61 67.39 0.78 1.32 16 17 S 0.17 6.99 18.35 -56.49 -1.04 5.95 16 18 C -0.28 -12.63 6.67 67.00 0.45 -12.19 16 19 S 0.10 4.99 20.74 -56.49 -1.17 3.82 16 20 C -0.57 -31.39 9.26 67.86 0.63 -30.76 16 21 H 0.08 4.48 5.97 -2.91 -0.02 4.46 16 22 C 0.03 1.80 5.49 84.74 0.47 2.26 16 23 N -0.90 -49.82 13.22 21.59 0.29 -49.54 16 24 Si 0.99 41.63 29.55 68.60 2.03 43.66 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 27 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 2.28 7.37 -2.39 -0.02 2.27 16 30 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.44 6.46 8.82 -92.71 -0.82 5.64 16 32 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.42 6.58 6.41 -92.71 -0.59 5.98 16 35 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.25 0.38 8.06 -2.91 -0.02 0.35 16 37 H 0.24 1.74 7.47 -2.91 -0.02 1.72 16 38 H 0.28 14.42 8.32 -92.71 -0.77 13.65 16 Total: -1.00 -76.06 367.76 1.24 -74.81 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.24 Total: 13.76 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 7.66 Total: -10.18 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -5.93 Total: -98.66 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.06 Total: -33.16 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 11.98 SS G_CDS: -2.21 Total: 9.77 kcal Total: -76.06 1.24 -74.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048363700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.123 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds