Wall clock time and date at job start Tue Mar 31 2020 06:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48500 * 109.47017 * 269.99997 * 3 2 1 5 5 H 1.48493 * 109.46912 * 29.99997 * 3 2 1 6 6 H 1.48504 * 109.46940 * 149.99927 * 3 2 1 7 7 C 1.38654 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99960 * 359.97438 * 7 2 1 9 9 O 1.34830 * 119.99993 * 180.02562 * 7 2 1 10 10 C 1.35752 * 117.00067 * 185.03515 * 9 7 2 11 11 C 1.38953 * 120.03413 * 174.74719 * 10 9 7 12 12 C 1.38120 * 120.06696 * 180.02562 * 11 10 9 13 13 C 1.38201 * 120.14126 * 0.02562 * 12 11 10 14 14 C 1.38915 * 120.06836 * 0.02562 * 13 12 11 15 15 N 1.39943 * 120.03824 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99621 * 34.75325 * 15 14 13 17 17 O 1.21584 * 120.00010 * 5.46775 * 16 15 14 18 18 N 1.34775 * 119.99735 * 185.47646 * 16 15 14 19 19 C 1.47080 * 120.88319 * 175.00518 * 18 16 15 20 20 C 1.53238 * 108.52160 * 231.20381 * 19 18 16 21 21 N 1.46895 * 109.33996 * 306.16385 * 20 19 18 22 22 C 1.39673 * 111.00321 * 187.25313 * 21 20 19 23 23 C 1.38912 * 120.07366 * 180.02562 * 22 21 20 24 24 C 1.38105 * 119.91888 * 180.02562 * 23 22 21 25 25 C 1.38277 * 120.08039 * 0.02562 * 24 23 22 26 26 C 1.38288 * 120.14948 * 359.97438 * 25 24 23 27 27 C 1.38107 * 120.07476 * 0.02562 * 26 25 24 28 28 C 1.46904 * 111.26718 * 63.10531 * 21 20 19 29 29 C 1.47073 * 120.88159 * 355.02143 * 18 16 15 30 30 C 1.38730 * 120.03104 * 355.04886 * 10 9 7 31 31 H 0.97003 * 120.00155 * 0.02562 * 1 2 3 32 32 H 1.07996 * 119.96227 * 0.02562 * 11 10 9 33 33 H 1.08002 * 119.92512 * 179.97438 * 12 11 10 34 34 H 1.08004 * 119.96831 * 179.97438 * 13 12 11 35 35 H 0.96996 * 119.99961 * 214.75278 * 15 14 13 36 36 H 1.08995 * 109.63153 * 111.48559 * 19 18 16 37 37 H 1.09006 * 109.62465 * 350.91166 * 19 18 16 38 38 H 1.09003 * 109.49123 * 186.20885 * 20 19 18 39 39 H 1.09002 * 109.51844 * 66.14094 * 20 19 18 40 40 H 1.07993 * 120.03808 * 0.02562 * 23 22 21 41 41 H 1.08004 * 119.95988 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.92814 * 179.72370 * 25 24 23 43 43 H 1.07998 * 119.96441 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.04074 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.49295 * 56.85622 * 28 21 20 46 46 H 1.09002 * 109.49204 * 176.93438 * 28 21 20 47 47 H 1.09007 * 109.62919 * 248.50722 * 29 18 16 48 48 H 1.08999 * 109.63203 * 9.08757 * 29 18 16 49 49 H 1.07999 * 120.07252 * 359.97438 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9735 -2.4056 -0.1067 11 6 5.3567 -2.4713 -0.2226 12 6 5.9844 -3.6968 -0.3318 13 6 5.2397 -4.8609 -0.3267 14 6 3.8565 -4.8018 -0.2122 15 7 3.1029 -5.9810 -0.2077 16 6 3.5980 -7.0948 0.3675 17 8 4.6539 -7.0507 0.9687 18 7 2.9226 -8.2575 0.2762 19 6 3.4953 -9.5065 0.8011 20 6 3.4234 -10.5738 -0.2961 21 7 2.0411 -10.6802 -0.7815 22 6 1.9019 -11.7533 -1.6647 23 6 0.6669 -12.0265 -2.2389 24 6 0.5327 -13.0887 -3.1114 25 6 1.6257 -13.8800 -3.4131 26 6 2.8566 -13.6108 -2.8432 27 6 2.9979 -12.5503 -1.9699 28 6 1.5965 -9.4257 -1.4032 29 6 1.5936 -8.3112 -0.3514 30 6 3.2226 -3.5721 -0.1065 31 1 -0.4850 0.8401 -0.0004 32 1 5.9413 -1.5633 -0.2273 33 1 7.0596 -3.7452 -0.4221 34 1 5.7334 -5.8176 -0.4126 35 1 2.2244 -5.9967 -0.6184 36 1 2.9239 -9.8347 1.6693 37 1 4.5349 -9.3419 1.0843 38 1 3.7415 -11.5343 0.1094 39 1 4.0780 -10.2926 -1.1211 40 1 -0.1873 -11.4091 -2.0034 41 1 -0.4273 -13.3019 -3.5579 42 1 1.5170 -14.7127 -4.0922 43 1 3.7082 -14.2311 -3.0807 44 1 3.9596 -12.3403 -1.5255 45 1 2.2764 -9.1600 -2.2126 46 1 0.5896 -9.5535 -1.8006 47 1 0.8393 -8.5247 0.4061 48 1 1.3758 -7.3565 -0.8301 49 1 2.1471 -3.5233 -0.0211 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048514627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:42 Heat of formation + Delta-G solvation = 38.401300 kcal Electronic energy + Delta-G solvation = -31946.943111 eV Core-core repulsion = 27647.932213 eV Total energy + Delta-G solvation = -4299.010899 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.11233 -40.17389 -39.01737 -37.87589 -36.59531 -34.94008 -34.31599 -32.37006 -32.12551 -30.91476 -30.39960 -29.38012 -28.66252 -26.86032 -25.23952 -24.79134 -23.12953 -22.33260 -21.90887 -21.74939 -20.85149 -19.52799 -18.87451 -17.89937 -17.80184 -17.35864 -16.25229 -16.13727 -15.83056 -15.67982 -15.33605 -15.16784 -14.96009 -14.69376 -14.46189 -14.34193 -14.08185 -13.89330 -13.86116 -13.75899 -13.42739 -13.11800 -12.86712 -12.63227 -12.33590 -12.20140 -12.07034 -11.95580 -11.77960 -11.70160 -11.52364 -11.22046 -11.19128 -10.91343 -10.79245 -10.29516 -10.22214 -10.06405 -9.70435 -9.49287 -9.30839 -8.91669 -8.85483 -8.23226 -7.79276 -7.28509 -6.43311 -4.10441 1.00251 1.03703 1.95302 2.27903 2.44910 3.13942 3.21306 3.22923 3.25900 3.40624 3.51637 3.71904 4.23057 4.32518 4.40732 4.50458 4.51555 4.58831 4.71307 4.76776 4.78569 4.86197 4.90075 5.03912 5.06326 5.08341 5.12977 5.18517 5.33242 5.39905 5.43724 5.58692 5.63230 5.65181 5.83877 5.90925 5.98130 6.03692 6.06809 6.16804 6.20186 6.24808 6.34212 6.44289 6.54710 6.68167 6.88433 6.90400 7.09659 7.20039 7.22848 7.59774 7.76470 7.87648 8.01849 8.53890 8.92363 9.54873 10.64346 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.001843 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.789300 B =15186.484652 C =16265.302896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.105 0.895 9 O -0.216 6.216 10 C 0.175 3.825 11 C -0.201 4.201 12 C -0.064 4.064 13 C -0.196 4.196 14 C 0.198 3.802 15 N -0.682 5.682 16 C 0.709 3.291 17 O -0.568 6.568 18 N -0.633 5.633 19 C 0.135 3.865 20 C 0.036 3.964 21 N -0.488 5.488 22 C 0.113 3.887 23 C -0.141 4.141 24 C -0.095 4.095 25 C -0.149 4.149 26 C -0.094 4.094 27 C -0.172 4.172 28 C 0.044 3.956 29 C 0.112 3.888 30 C -0.246 4.246 31 H 0.279 0.721 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.402 0.598 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.052 0.948 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -26.311 -5.659 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.122 0.878 9 O -0.121 6.121 10 C 0.123 3.877 11 C -0.221 4.221 12 C -0.083 4.083 13 C -0.217 4.217 14 C 0.104 3.896 15 N -0.331 5.331 16 C 0.411 3.589 17 O -0.444 6.444 18 N -0.371 5.371 19 C 0.012 3.988 20 C -0.092 4.092 21 N -0.203 5.203 22 C 0.015 3.985 23 C -0.161 4.161 24 C -0.114 4.114 25 C -0.168 4.168 26 C -0.113 4.113 27 C -0.192 4.192 28 C -0.082 4.082 29 C -0.012 4.012 30 C -0.267 4.267 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.840 -25.943 -4.731 26.523 hybrid contribution -0.116 0.639 -0.774 1.011 sum 2.724 -25.304 -5.505 26.039 Atomic orbital electron populations 1.69641 1.05550 1.28480 1.48217 1.24457 0.95033 0.98841 0.95659 0.86180 0.80385 0.81401 0.78951 1.19891 1.20827 1.18297 1.20717 0.76919 0.96498 1.52340 0.87799 1.83602 1.22564 1.25344 1.80596 1.18777 0.91433 0.84924 0.92600 1.20238 0.91853 0.98043 1.11960 1.20519 0.98630 0.91273 0.97866 1.20592 0.92082 0.98520 1.10528 1.17191 0.90589 0.83530 0.98304 1.42767 1.21397 1.08914 1.59991 1.15753 0.83559 0.80033 0.79511 1.90942 1.23097 1.84078 1.46293 1.47311 1.19105 1.07142 1.63587 1.21579 1.01076 0.80985 0.95197 1.22754 0.87617 1.00364 0.98429 1.59013 1.22965 1.03270 1.35025 1.18967 0.93917 0.93656 0.91912 1.20815 0.96077 0.99677 0.99522 1.21035 0.98767 0.94556 0.97028 1.21092 0.93197 1.00705 1.01779 1.21023 0.97537 0.96677 0.96013 1.21341 0.97945 0.98709 1.01230 1.22653 1.02055 0.87741 0.95739 1.21793 0.85094 0.98436 0.95855 1.20891 1.01219 0.90542 1.14093 0.91081 0.86384 0.86458 0.86252 0.76045 0.90657 0.87925 0.88596 0.92929 0.85661 0.85879 0.86234 0.86082 0.85545 0.92993 0.88572 0.89884 0.89446 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.04 13.96 55.48 0.77 -24.26 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.51 28.62 -169.99 -4.86 16.64 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.39 -10.78 9.94 30.89 0.31 -10.48 16 8 H 0.10 2.91 5.43 -52.48 -0.29 2.63 16 9 O -0.22 -5.65 8.58 0.04 0.00 -5.65 16 10 C 0.18 4.04 6.65 -39.13 -0.26 3.78 16 11 C -0.20 -4.04 9.99 -39.36 -0.39 -4.43 16 12 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 13 C -0.20 -3.67 8.65 -39.34 -0.34 -4.01 16 14 C 0.20 3.75 6.25 -83.71 -0.52 3.23 16 15 N -0.68 -10.53 5.25 -14.24 -0.07 -10.60 16 16 C 0.71 10.88 8.03 -86.92 -0.70 10.18 16 17 O -0.57 -10.66 13.61 5.29 0.07 -10.59 16 18 N -0.63 -7.15 3.01 -178.19 -0.54 -7.69 16 19 C 0.14 1.30 6.58 -3.60 -0.02 1.27 16 20 C 0.04 0.29 4.30 -3.70 -0.02 0.27 16 21 N -0.49 -4.03 4.67 -170.82 -0.80 -4.82 16 22 C 0.11 0.95 5.65 -83.79 -0.47 0.48 16 23 C -0.14 -1.09 9.15 -39.38 -0.36 -1.45 16 24 C -0.10 -0.67 10.04 -39.62 -0.40 -1.06 16 25 C -0.15 -1.02 10.04 -39.55 -0.40 -1.42 16 26 C -0.09 -0.67 10.04 -39.61 -0.40 -1.07 16 27 C -0.17 -1.35 8.83 -39.38 -0.35 -1.70 16 28 C 0.04 0.34 5.43 -3.70 -0.02 0.32 16 29 C 0.11 0.95 6.59 -3.61 -0.02 0.93 16 30 C -0.25 -5.26 9.08 -39.21 -0.36 -5.61 16 31 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.12 2.20 6.52 -52.48 -0.34 1.86 16 35 H 0.40 5.08 6.32 -40.82 -0.26 4.82 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.09 7.10 -51.93 -0.37 0.72 16 38 H 0.10 0.63 6.88 -51.93 -0.36 0.27 16 39 H 0.05 0.45 7.82 -51.93 -0.41 0.05 16 40 H 0.13 0.83 7.14 -52.49 -0.38 0.45 16 41 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.13 0.86 5.81 -52.49 -0.30 0.55 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.60 6.66 -51.93 -0.35 0.25 16 47 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 48 H 0.09 0.67 5.64 -51.93 -0.29 0.38 16 49 H 0.14 2.96 5.63 -52.49 -0.30 2.67 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -32.86 393.75 -10.86 -43.71 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.15 Total: 7.99 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -5.21 Total: -10.67 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.63 Total: -47.38 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.07 Total: -16.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.86 -10.86 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.116 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds