Wall clock time and date at job start Tue Mar 31 2020 06:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48500 * 109.47017 * 269.99997 * 3 2 1 5 5 H 1.48493 * 109.46912 * 29.99997 * 3 2 1 6 6 H 1.48504 * 109.46940 * 149.99927 * 3 2 1 7 7 C 1.38654 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99960 * 359.97438 * 7 2 1 9 9 O 1.34830 * 119.99993 * 180.02562 * 7 2 1 10 10 C 1.35752 * 117.00067 * 185.03515 * 9 7 2 11 11 C 1.38953 * 120.03413 * 174.74719 * 10 9 7 12 12 C 1.38120 * 120.06696 * 180.02562 * 11 10 9 13 13 C 1.38201 * 120.14126 * 0.02562 * 12 11 10 14 14 C 1.38915 * 120.06836 * 0.02562 * 13 12 11 15 15 N 1.39943 * 120.03824 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99621 * 34.75325 * 15 14 13 17 17 O 1.21584 * 120.00010 * 5.46775 * 16 15 14 18 18 N 1.34775 * 119.99735 * 185.47646 * 16 15 14 19 19 C 1.47080 * 120.88319 * 175.00518 * 18 16 15 20 20 C 1.53238 * 108.52160 * 231.20381 * 19 18 16 21 21 N 1.46895 * 109.33996 * 306.16385 * 20 19 18 22 22 C 1.39673 * 111.00321 * 187.25313 * 21 20 19 23 23 C 1.38912 * 120.07366 * 180.02562 * 22 21 20 24 24 C 1.38105 * 119.91888 * 180.02562 * 23 22 21 25 25 C 1.38277 * 120.08039 * 0.02562 * 24 23 22 26 26 C 1.38288 * 120.14948 * 359.97438 * 25 24 23 27 27 C 1.38107 * 120.07476 * 0.02562 * 26 25 24 28 28 C 1.46904 * 111.26718 * 63.10531 * 21 20 19 29 29 C 1.47073 * 120.88159 * 355.02143 * 18 16 15 30 30 C 1.38730 * 120.03104 * 355.04886 * 10 9 7 31 31 H 0.97003 * 120.00155 * 0.02562 * 1 2 3 32 32 H 1.07996 * 119.96227 * 0.02562 * 11 10 9 33 33 H 1.08002 * 119.92512 * 179.97438 * 12 11 10 34 34 H 1.08004 * 119.96831 * 179.97438 * 13 12 11 35 35 H 0.96996 * 119.99961 * 214.75278 * 15 14 13 36 36 H 1.08995 * 109.63153 * 111.48559 * 19 18 16 37 37 H 1.09006 * 109.62465 * 350.91166 * 19 18 16 38 38 H 1.09003 * 109.49123 * 186.20885 * 20 19 18 39 39 H 1.09002 * 109.51844 * 66.14094 * 20 19 18 40 40 H 1.07993 * 120.03808 * 0.02562 * 23 22 21 41 41 H 1.08004 * 119.95988 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.92814 * 179.72370 * 25 24 23 43 43 H 1.07998 * 119.96441 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.04074 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.49295 * 56.85622 * 28 21 20 46 46 H 1.09002 * 109.49204 * 176.93438 * 28 21 20 47 47 H 1.09007 * 109.62919 * 248.50722 * 29 18 16 48 48 H 1.08999 * 109.63203 * 9.08757 * 29 18 16 49 49 H 1.07999 * 120.07252 * 359.97438 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9735 -2.4056 -0.1067 11 6 5.3567 -2.4713 -0.2226 12 6 5.9844 -3.6968 -0.3318 13 6 5.2397 -4.8609 -0.3267 14 6 3.8565 -4.8018 -0.2122 15 7 3.1029 -5.9810 -0.2077 16 6 3.5980 -7.0948 0.3675 17 8 4.6539 -7.0507 0.9687 18 7 2.9226 -8.2575 0.2762 19 6 3.4953 -9.5065 0.8011 20 6 3.4234 -10.5738 -0.2961 21 7 2.0411 -10.6802 -0.7815 22 6 1.9019 -11.7533 -1.6647 23 6 0.6669 -12.0265 -2.2389 24 6 0.5327 -13.0887 -3.1114 25 6 1.6257 -13.8800 -3.4131 26 6 2.8566 -13.6108 -2.8432 27 6 2.9979 -12.5503 -1.9699 28 6 1.5965 -9.4257 -1.4032 29 6 1.5936 -8.3112 -0.3514 30 6 3.2226 -3.5721 -0.1065 31 1 -0.4850 0.8401 -0.0004 32 1 5.9413 -1.5633 -0.2273 33 1 7.0596 -3.7452 -0.4221 34 1 5.7334 -5.8176 -0.4126 35 1 2.2244 -5.9967 -0.6184 36 1 2.9239 -9.8347 1.6693 37 1 4.5349 -9.3419 1.0843 38 1 3.7415 -11.5343 0.1094 39 1 4.0780 -10.2926 -1.1211 40 1 -0.1873 -11.4091 -2.0034 41 1 -0.4273 -13.3019 -3.5579 42 1 1.5170 -14.7127 -4.0922 43 1 3.7082 -14.2311 -3.0807 44 1 3.9596 -12.3403 -1.5255 45 1 2.2764 -9.1600 -2.2126 46 1 0.5896 -9.5535 -1.8006 47 1 0.8393 -8.5247 0.4061 48 1 1.3758 -7.3565 -0.8301 49 1 2.1471 -3.5233 -0.0211 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048514627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:41 Heat of formation + Delta-G solvation = 19.173777 kcal Electronic energy + Delta-G solvation = -31947.776879 eV Core-core repulsion = 27647.932213 eV Total energy + Delta-G solvation = -4299.844667 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.11460 -41.15158 -40.51688 -38.84234 -38.04362 -35.98185 -35.55214 -34.38551 -32.81957 -31.56499 -31.26270 -30.87560 -30.05801 -27.69490 -27.15499 -25.52165 -24.14475 -23.45475 -23.10565 -22.63780 -21.84319 -20.73401 -20.04327 -19.53960 -19.16537 -18.28346 -17.47452 -17.10742 -16.77121 -16.66511 -16.57035 -16.36939 -15.97778 -15.74014 -15.67811 -15.63376 -15.37687 -15.08192 -14.92855 -14.70072 -14.47733 -14.41136 -14.19281 -13.97024 -13.54240 -13.31856 -13.25804 -12.85511 -12.71297 -12.65901 -12.60978 -12.47673 -12.42859 -12.17576 -12.06859 -11.77719 -11.53340 -11.35400 -11.16921 -10.84023 -10.82264 -9.88489 -9.83958 -9.37744 -8.91231 -8.82393 -8.48695 -6.21218 0.40775 0.44872 0.50040 0.65379 1.33070 1.36176 1.38334 1.54131 1.93605 2.29724 2.55412 2.65574 2.79004 2.95004 3.07193 3.14414 3.63734 3.78436 3.80161 4.06289 4.07756 4.08974 4.14544 4.21612 4.29306 4.30182 4.34880 4.42650 4.54721 4.56295 4.58904 4.59449 4.65456 4.70709 4.73082 4.82395 4.90602 4.91607 5.10477 5.18981 5.29710 5.34968 5.41467 5.48323 5.52345 5.62111 5.67892 5.73079 5.77922 5.84212 5.91823 5.95256 6.21984 6.31375 6.68319 6.85857 7.31130 7.58939 8.62363 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.001843 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.789300 B =15186.484652 C =16265.302896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.398 4.398 8 H 0.084 0.916 9 O -0.240 6.240 10 C 0.142 3.858 11 C -0.202 4.202 12 C -0.051 4.051 13 C -0.190 4.190 14 C 0.200 3.800 15 N -0.677 5.677 16 C 0.706 3.294 17 O -0.605 6.605 18 N -0.624 5.624 19 C 0.134 3.866 20 C 0.045 3.955 21 N -0.490 5.490 22 C 0.097 3.903 23 C -0.151 4.151 24 C -0.102 4.102 25 C -0.155 4.155 26 C -0.103 4.103 27 C -0.183 4.183 28 C 0.050 3.950 29 C 0.109 3.891 30 C -0.256 4.256 31 H 0.284 0.716 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.128 0.872 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.042 0.958 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 -27.956 -6.404 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.101 0.899 9 O -0.147 6.147 10 C 0.092 3.908 11 C -0.222 4.222 12 C -0.070 4.070 13 C -0.211 4.211 14 C 0.105 3.895 15 N -0.327 5.327 16 C 0.409 3.591 17 O -0.484 6.484 18 N -0.361 5.361 19 C 0.011 3.989 20 C -0.083 4.083 21 N -0.206 5.206 22 C 0.000 4.000 23 C -0.171 4.171 24 C -0.121 4.121 25 C -0.174 4.174 26 C -0.121 4.121 27 C -0.204 4.204 28 C -0.077 4.077 29 C -0.014 4.014 30 C -0.278 4.278 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.146 0.854 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.064 0.936 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.061 0.939 46 H 0.132 0.868 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.971 -27.669 -5.497 28.488 hybrid contribution -0.383 0.793 -0.578 1.054 sum 3.588 -26.876 -6.075 27.786 Atomic orbital electron populations 1.69717 1.06779 1.29540 1.50081 1.25237 0.95871 1.02030 0.95557 0.85257 0.78850 0.77601 0.79298 1.18990 1.19432 1.18759 1.20689 0.77988 0.96123 1.52589 0.89859 1.83551 1.21373 1.26906 1.82870 1.19319 0.92857 0.84560 0.94054 1.20538 0.90617 0.99744 1.11251 1.20967 1.00653 0.89866 0.95491 1.20887 0.91935 0.99313 1.08992 1.17230 0.91189 0.83844 0.97227 1.42677 1.21797 1.08148 1.60083 1.15876 0.83385 0.80674 0.79185 1.90906 1.24791 1.84780 1.47891 1.47388 1.19710 1.06317 1.62711 1.21702 1.00515 0.80524 0.96169 1.22667 0.87675 1.00334 0.97580 1.59046 1.22834 1.03388 1.35289 1.19103 0.94490 0.93900 0.92548 1.21011 0.96161 1.00193 0.99730 1.21326 0.99738 0.94233 0.96758 1.21404 0.93060 1.01109 1.01786 1.21303 0.98390 0.96687 0.95738 1.21520 0.98186 0.99043 1.01653 1.22627 1.02831 0.87252 0.94955 1.22008 0.83694 0.99321 0.96400 1.20851 1.00555 0.91422 1.14935 0.90617 0.84708 0.82273 0.85426 0.74616 0.89773 0.89030 0.87048 0.93623 0.84875 0.84095 0.84438 0.84464 0.84946 0.93929 0.86843 0.88782 0.88797 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.84 13.96 21.61 0.30 -53.54 16 2 C 0.01 0.66 5.49 84.83 0.47 1.13 16 3 Si 0.97 44.84 28.62 68.60 1.96 46.80 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.40 -22.91 9.94 67.92 0.68 -22.24 16 8 H 0.08 4.97 5.43 -2.91 -0.02 4.96 16 9 O -0.24 -12.85 8.58 -22.76 -0.20 -13.04 16 10 C 0.14 6.64 6.65 22.56 0.15 6.79 16 11 C -0.20 -7.82 9.99 22.41 0.22 -7.60 16 12 C -0.05 -1.71 10.03 22.23 0.22 -1.48 16 13 C -0.19 -6.80 8.65 22.42 0.19 -6.60 16 14 C 0.20 7.53 6.25 38.13 0.24 7.77 16 15 N -0.68 -20.67 5.25 -317.23 -1.67 -22.34 16 16 C 0.71 21.23 8.03 179.05 1.44 22.67 16 17 O -0.60 -22.33 13.61 -3.98 -0.05 -22.39 16 18 N -0.62 -13.53 3.01 -835.95 -2.52 -16.04 16 19 C 0.13 2.43 6.58 86.35 0.57 3.00 16 20 C 0.05 0.66 4.30 86.38 0.37 1.03 16 21 N -0.49 -7.36 4.67 -694.34 -3.24 -10.61 16 22 C 0.10 1.49 5.65 38.21 0.22 1.71 16 23 C -0.15 -2.10 9.15 22.40 0.20 -1.89 16 24 C -0.10 -1.24 10.04 22.25 0.22 -1.01 16 25 C -0.15 -1.83 10.04 22.29 0.22 -1.60 16 26 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 27 C -0.18 -2.64 8.83 22.40 0.20 -2.44 16 28 C 0.05 0.69 5.43 86.38 0.47 1.16 16 29 C 0.11 1.70 6.59 86.35 0.57 2.27 16 30 C -0.26 -11.22 9.08 22.51 0.20 -11.01 16 31 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.13 4.44 6.52 -2.91 -0.02 4.42 16 35 H 0.41 10.37 6.32 -92.71 -0.59 9.79 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.91 7.10 -2.38 -0.02 1.89 16 38 H 0.11 1.29 6.88 -2.39 -0.02 1.27 16 39 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 40 H 0.13 1.53 7.14 -2.91 -0.02 1.51 16 41 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 42 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.13 1.62 5.81 -2.91 -0.02 1.61 16 45 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 1.20 6.66 -2.39 -0.02 1.18 16 47 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.09 1.34 5.64 -2.39 -0.01 1.33 16 49 H 0.12 5.55 5.63 -2.91 -0.02 5.54 16 Total: -1.00 -72.30 393.75 2.09 -70.21 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.42 Total: 30.37 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 7.08 Total: -9.43 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -7.12 Total: -102.53 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.25 Total: -35.43 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.96 Total: 46.80 kcal Total: -72.30 2.09 -70.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048514627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.386 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds