Wall clock time and date at job start Tue Mar 31 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53039 * 109.45692 * 2 1 4 4 C 1.53194 * 109.31094 * 178.62644 * 3 2 1 5 5 N 1.46928 * 108.77757 * 54.63575 * 4 3 2 6 6 S 1.65599 * 120.63110 * 126.36581 * 5 4 3 7 7 O 1.42099 * 106.40109 * 336.46360 * 6 5 4 8 8 O 1.42098 * 106.40061 * 203.54252 * 6 5 4 9 9 C 1.76199 * 107.21512 * 90.00324 * 6 5 4 10 10 C 1.40657 * 119.75588 * 270.02151 * 9 6 5 11 11 C 1.35994 * 119.75802 * 180.02562 * 10 9 6 12 12 C 1.41198 * 119.35786 * 359.97438 * 11 10 9 13 13 N 1.31993 * 131.94948 * 180.02562 * 12 11 10 14 14 N 1.40181 * 107.73404 * 179.97438 * 13 12 11 15 15 C 1.36942 * 126.21393 * 180.26184 * 14 13 12 16 16 H 1.07992 * 120.00008 * 179.68940 * 15 14 13 17 17 C 1.38535 * 120.00049 * 359.69592 * 15 14 13 18 18 N 1.31611 * 120.00058 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00106 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46887 * 89.99951 * 19 17 15 21 21 H 1.48490 * 109.47123 * 209.99665 * 19 17 15 22 22 H 1.48493 * 109.46786 * 329.99985 * 19 17 15 23 23 C 1.34804 * 107.56862 * 0.02562 * 14 13 12 24 24 O 1.21705 * 125.98196 * 179.97438 * 23 14 13 25 25 N 1.34822 * 108.03086 * 359.97438 * 23 14 13 26 26 C 1.34782 * 119.75566 * 90.00212 * 9 6 5 27 27 C 1.46929 * 118.73813 * 306.64618 * 5 4 3 28 28 C 1.52763 * 109.01001 * 53.30289 * 27 5 4 29 29 H 1.09003 * 109.47341 * 60.00472 * 1 2 3 30 30 H 1.09007 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47492 * 300.00168 * 1 2 3 32 32 H 1.09006 * 109.46016 * 119.97475 * 2 1 3 33 33 H 1.09002 * 109.49951 * 58.67980 * 3 2 1 34 34 H 1.08994 * 109.50189 * 298.57898 * 3 2 1 35 35 H 1.09008 * 109.58613 * 294.84780 * 4 3 2 36 36 H 1.08996 * 109.70457 * 174.49397 * 4 3 2 37 37 H 1.07998 * 120.11949 * 359.97438 * 10 9 6 38 38 H 1.08000 * 120.32536 * 180.02562 * 11 10 9 39 39 H 0.96998 * 120.00461 * 179.97438 * 18 17 15 40 40 H 1.07999 * 119.65829 * 359.97417 * 26 9 6 41 41 H 1.08995 * 109.58783 * 173.14072 * 27 5 4 42 42 H 1.09001 * 109.58449 * 293.57159 * 27 5 4 43 43 H 1.08995 * 109.56533 * 185.55019 * 28 27 5 44 44 H 1.09005 * 109.35777 * 65.50040 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5713 1.4392 0.0347 5 7 4.0677 0.6239 -1.0823 6 16 5.1653 1.2433 -2.1565 7 8 5.0235 2.6563 -2.1053 8 8 5.0237 0.4909 -3.3536 9 6 6.7712 0.8813 -1.5283 10 6 7.4071 1.7955 -0.6691 11 6 8.6468 1.5164 -0.1846 12 6 9.2780 0.3082 -0.5528 13 7 10.4521 -0.2057 -0.2373 14 7 10.5668 -1.4411 -0.8897 15 6 11.6338 -2.2967 -0.8205 16 1 11.6136 -3.2300 -1.3633 17 6 12.7391 -1.9649 -0.0541 18 7 12.7639 -0.8272 0.6072 19 14 14.1944 -3.1322 0.0409 20 1 15.1586 -2.8103 -1.0417 21 1 14.8624 -2.9844 1.3588 22 1 13.7189 -4.5299 -0.1191 23 6 9.4337 -1.6364 -1.5934 24 8 9.1794 -2.6050 -2.2850 25 7 8.6315 -0.5707 -1.3968 26 6 7.3809 -0.2699 -1.8742 27 6 3.5669 -0.7493 -1.2318 28 6 2.0396 -0.7229 -1.2490 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8931 -0.5135 0.8903 33 1 1.6573 1.9640 0.8778 34 1 1.6975 1.9498 -0.9022 35 1 3.9144 1.0142 0.9780 36 1 3.9436 2.4589 -0.0636 37 1 6.9131 2.7162 -0.3959 38 1 9.1433 2.2116 0.4760 39 1 13.5376 -0.5950 1.1441 40 1 6.8800 -0.9626 -2.5342 41 1 3.9342 -1.1725 -2.1667 42 1 3.9096 -1.3564 -0.3938 43 1 1.6570 -1.7434 -1.2603 44 1 1.6973 -0.1957 -2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049407957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:03 Heat of formation + Delta-G solvation = 5.493490 kcal Electronic energy + Delta-G solvation = -31359.620341 eV Core-core repulsion = 27020.678877 eV Total energy + Delta-G solvation = -4338.941464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.119 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.09276 -38.96864 -37.71648 -37.30122 -36.02018 -35.83641 -34.03476 -33.91801 -32.55413 -31.35366 -31.09088 -28.47175 -28.00365 -26.38896 -23.77620 -23.56967 -22.99068 -22.55845 -21.34748 -20.50201 -19.17221 -18.45600 -18.08857 -17.52798 -16.67184 -16.53004 -16.07357 -15.87833 -15.24280 -14.92181 -14.85135 -14.58679 -14.46562 -14.38772 -14.33004 -14.02352 -13.99625 -13.21454 -13.00775 -12.82352 -12.41965 -12.16249 -12.10571 -12.02331 -11.98615 -11.92492 -11.76499 -11.71353 -11.43390 -11.30683 -11.19606 -11.11392 -11.01567 -10.68289 -10.63863 -10.60527 -10.48423 -10.28209 -9.81673 -9.24137 -9.19724 -8.73424 -7.15987 -6.77047 -4.38307 0.35519 0.93777 1.71730 2.58884 2.93060 2.93756 3.02654 3.09039 3.55444 3.68650 3.79115 3.88727 4.16091 4.29093 4.41749 4.50627 4.50993 4.67659 4.82301 4.90074 4.90272 5.03531 5.12293 5.22124 5.32755 5.34814 5.42719 5.49823 5.53287 5.55032 5.60383 5.63232 5.66199 5.80027 5.85812 5.87425 6.04850 6.11393 6.15945 6.32975 6.43277 6.65254 6.77072 6.93351 7.15392 7.66680 8.05388 8.52081 8.86859 9.28140 10.21647 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.002510 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.361764 B =11154.553980 C =11450.634943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.126 4.126 4 C 0.117 3.883 5 N -0.997 5.997 6 S 2.710 3.290 7 O -0.953 6.953 8 O -0.960 6.960 9 C -0.741 4.741 10 C -0.067 4.067 11 C -0.075 4.075 12 C 0.166 3.834 13 N -0.193 5.193 14 N -0.215 5.215 15 C -0.290 4.290 16 H 0.130 0.870 17 C 0.039 3.961 18 N -0.788 5.788 19 Si 0.946 3.054 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.261 1.261 23 C 0.541 3.459 24 O -0.585 6.585 25 N -0.459 5.459 26 C 0.261 3.739 27 C 0.114 3.886 28 C -0.126 4.126 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.278 0.722 40 H 0.172 0.828 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 5.057 2.785 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.166 4.166 4 C -0.008 4.008 5 N -0.836 5.836 6 S 2.801 3.199 7 O -0.943 6.943 8 O -0.950 6.950 9 C -0.834 4.834 10 C -0.092 4.092 11 C -0.098 4.098 12 C -0.091 4.091 13 N -0.022 5.022 14 N -0.017 5.017 15 C -0.420 4.420 16 H 0.147 0.853 17 C -0.175 4.175 18 N -0.417 5.417 19 Si 0.769 3.231 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.185 1.185 23 C 0.247 3.753 24 O -0.466 6.466 25 N -0.171 5.171 26 C 0.132 3.868 27 C -0.011 4.011 28 C -0.165 4.165 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.089 0.911 40 H 0.189 0.811 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.196 4.908 2.267 18.982 hybrid contribution 0.664 -0.799 0.277 1.075 sum -17.532 4.109 2.544 18.186 Atomic orbital electron populations 1.21831 0.95132 1.01704 1.01766 1.21109 0.95511 0.96049 0.98478 1.21939 0.95017 0.96797 1.02805 1.21487 0.94630 0.95607 0.89062 1.57755 1.57693 1.23180 1.44954 1.01418 0.72388 0.73335 0.72787 1.93547 1.85919 1.28553 1.86320 1.93569 1.86126 1.72860 1.42482 1.30288 1.26094 1.05019 1.22017 1.20079 0.94951 0.97966 0.96226 1.19987 0.94736 0.93277 1.01773 1.21681 0.92665 0.95539 0.99184 1.78932 1.10855 0.95359 1.17033 1.44819 1.12321 1.12915 1.31601 1.19872 0.91352 1.00248 1.30569 0.85274 1.25641 0.99404 0.97397 0.95092 1.70248 1.29415 1.19508 1.22570 0.85627 0.79277 0.79783 0.78424 1.19363 1.19913 1.18539 1.16369 0.83720 0.84852 0.90360 1.90893 1.77364 1.31062 1.47301 1.43545 1.14800 1.19720 1.39060 1.21302 0.82548 0.93712 0.89265 1.21428 0.94856 0.81643 1.03189 1.21861 0.94935 1.01188 0.98557 0.92691 0.92690 0.92699 0.90886 0.90681 0.91294 0.91129 0.88614 0.83872 0.83400 0.91122 0.81099 0.88652 0.91122 0.90600 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.63 2.68 -90.58 -0.24 -0.88 16 3 C -0.13 -0.90 5.36 -26.61 -0.14 -1.04 16 4 C 0.12 0.98 6.48 -3.71 -0.02 0.95 16 5 N -1.00 -10.23 3.30 -113.76 -0.37 -10.60 16 6 S 2.71 35.99 5.72 -107.50 -0.61 35.37 16 7 O -0.95 -13.97 15.89 -57.17 -0.91 -14.88 16 8 O -0.96 -14.86 15.78 -57.17 -0.90 -15.76 16 9 C -0.74 -11.40 5.94 -39.89 -0.24 -11.63 16 10 C -0.07 -0.99 9.53 -39.47 -0.38 -1.37 16 11 C -0.07 -1.30 10.11 -39.26 -0.40 -1.70 16 12 C 0.17 3.72 7.86 -155.60 -1.22 2.50 16 13 N -0.19 -5.02 10.48 31.28 0.33 -4.69 16 14 N -0.22 -5.92 3.68 -15.44 -0.06 -5.97 16 15 C -0.29 -7.84 10.08 -15.16 -0.15 -7.99 16 16 H 0.13 3.38 7.80 -52.49 -0.41 2.97 16 17 C 0.04 0.98 5.49 -17.54 -0.10 0.88 16 18 N -0.79 -20.57 11.82 55.47 0.66 -19.91 16 19 Si 0.95 18.77 29.55 -169.99 -5.02 13.75 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C 0.54 14.30 8.61 -86.85 -0.75 13.55 16 24 O -0.58 -16.39 17.81 5.18 0.09 -16.30 16 25 N -0.46 -10.35 2.91 -66.61 -0.19 -10.55 16 26 C 0.26 4.74 10.36 -16.37 -0.17 4.57 16 27 C 0.11 1.04 6.45 -3.93 -0.03 1.02 16 28 C -0.13 -0.96 5.34 -26.83 -0.14 -1.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.10 0.79 6.92 -51.93 -0.36 0.43 16 37 H 0.14 1.68 7.65 -52.49 -0.40 1.28 16 38 H 0.15 2.19 8.06 -52.49 -0.42 1.76 16 39 H 0.28 6.62 8.31 -40.82 -0.34 6.29 16 40 H 0.17 2.79 7.51 -52.49 -0.39 2.40 16 41 H 0.10 0.92 6.91 -51.93 -0.36 0.56 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -34.41 376.32 -10.67 -45.08 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.71 Total: 1.55 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -3.64 Total: -2.76 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.36 Total: -51.73 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.72 Total: -46.94 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Atomic # 16 Polarization: 35.99 SS G_CDS: -0.61 Total: 35.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.41 -10.67 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049407957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.573 kcal (2) G-P(sol) polarization free energy of solvation -34.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds