Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46940 * 2 1 4 4 C 1.50698 * 109.47342 * 119.99595 * 2 1 3 5 5 O 1.21282 * 119.99860 * 91.98544 * 4 2 1 6 6 N 1.34779 * 120.00315 * 271.98768 * 4 2 1 7 7 C 1.46501 * 119.99738 * 4.97331 * 6 4 2 8 8 C 1.46497 * 119.99832 * 184.69652 * 6 4 2 9 9 C 1.50704 * 109.47072 * 270.27526 * 8 6 4 10 10 H 1.07999 * 119.99666 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99679 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99878 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00125 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46945 * 90.00182 * 13 11 9 15 15 H 1.48502 * 109.47109 * 210.00164 * 13 11 9 16 16 H 1.48496 * 109.47353 * 330.00051 * 13 11 9 17 17 N 1.46905 * 109.47385 * 239.99866 * 2 1 3 18 18 C 1.47019 * 110.99786 * 311.05648 * 17 2 1 19 19 C 1.53095 * 109.25679 * 177.60516 * 18 17 2 20 20 O 1.43020 * 109.25691 * 56.85020 * 19 18 17 21 21 C 1.43017 * 113.73897 * 301.32669 * 20 19 18 22 22 H 1.09000 * 109.50871 * 298.74330 * 21 20 19 23 23 C 1.50693 * 109.50840 * 178.60699 * 21 20 19 24 24 C 1.38242 * 119.98628 * 324.72673 * 23 21 20 25 25 C 1.38211 * 120.01507 * 179.72536 * 24 23 21 26 26 C 1.38354 * 119.98387 * 0.54715 * 25 24 23 27 27 Cl 1.73601 * 120.01271 * 179.74472 * 26 25 24 28 28 C 1.38351 * 119.97559 * 359.73104 * 26 25 24 29 29 C 1.38216 * 119.98653 * 359.97438 * 28 26 25 30 30 C 1.47005 * 111.00115 * 187.42309 * 17 2 1 31 31 H 1.08997 * 109.47584 * 308.30854 * 1 2 3 32 32 H 1.09001 * 109.47154 * 68.31628 * 1 2 3 33 33 H 1.09003 * 109.46999 * 188.31406 * 1 2 3 34 34 H 1.09002 * 109.46583 * 272.18425 * 7 6 4 35 35 H 1.08998 * 109.46965 * 32.18086 * 7 6 4 36 36 H 1.08993 * 109.47008 * 152.18426 * 7 6 4 37 37 H 1.08993 * 109.47631 * 30.27606 * 8 6 4 38 38 H 1.09001 * 109.46708 * 150.27513 * 8 6 4 39 39 H 0.96996 * 120.00421 * 179.97438 * 12 11 9 40 40 H 1.09001 * 109.50685 * 297.54171 * 18 17 2 41 41 H 1.09003 * 109.50428 * 57.62616 * 18 17 2 42 42 H 1.09001 * 109.50724 * 176.78175 * 19 18 17 43 43 H 1.08996 * 109.50836 * 296.87138 * 19 18 17 44 44 H 1.08001 * 119.99469 * 0.02562 * 24 23 21 45 45 H 1.08001 * 120.00933 * 180.27374 * 25 24 23 46 46 H 1.07998 * 120.01041 * 179.97438 * 28 26 25 47 47 H 1.07992 * 119.99861 * 180.02562 * 29 28 26 48 48 H 1.09007 * 109.50625 * 302.32620 * 30 17 2 49 49 H 1.09000 * 109.51226 * 62.45427 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.2688 -1.8992 1.1903 6 7 2.2189 -0.0245 2.3756 7 6 1.8310 1.3860 2.4562 8 6 2.8038 -0.6911 3.5417 9 6 1.7061 -1.3014 4.3746 10 1 0.6758 -1.2022 4.0664 11 6 2.0172 -1.9854 5.5306 12 7 1.0593 -2.5176 6.2577 13 14 3.7993 -2.1563 6.0639 14 1 4.1664 -1.0127 6.9371 15 1 3.9720 -3.4267 6.8133 16 1 4.6760 -2.1655 4.8654 17 7 2.0197 -0.6925 -1.1994 18 6 1.3454 -1.9875 -1.3723 19 6 1.8408 -2.6464 -2.6624 20 8 3.2637 -2.7799 -2.6076 21 6 3.9525 -1.5378 -2.4404 22 1 3.7389 -0.8862 -3.2877 23 6 5.4357 -1.7916 -2.3608 24 6 5.9091 -2.9329 -1.7407 25 6 7.2692 -3.1691 -1.6724 26 6 8.1574 -2.2575 -2.2149 27 17 9.8661 -2.5502 -2.1236 28 6 7.6833 -1.1127 -2.8303 29 6 6.3227 -0.8805 -2.9033 30 6 3.4784 -0.8676 -1.1480 31 1 -0.3634 0.6370 0.8063 32 1 -0.3633 0.3797 -0.9550 33 1 -0.3633 -1.0169 0.1486 34 1 2.6594 2.0102 2.1212 35 1 0.9636 1.5611 1.8197 36 1 1.5815 1.6359 3.4873 37 1 3.4852 -1.4739 3.2088 38 1 3.3515 0.0373 4.1397 39 1 1.2780 -2.9991 7.0708 40 1 1.5728 -2.6325 -0.5236 41 1 0.2683 -1.8317 -1.4327 42 1 1.3864 -3.6319 -2.7654 43 1 1.5652 -2.0275 -3.5162 44 1 5.2159 -3.6425 -1.3138 45 1 7.6387 -4.0629 -1.1918 46 1 8.3762 -0.4005 -3.2535 47 1 5.9525 0.0128 -3.3840 48 1 3.9584 0.1057 -1.0455 49 1 3.7400 -1.4946 -0.2957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052248188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -38.680804 kcal Electronic energy + Delta-G solvation = -31909.220859 eV Core-core repulsion = 27669.860491 eV Total energy + Delta-G solvation = -4239.360368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66803 -39.59034 -38.40194 -36.66755 -35.83675 -34.89271 -32.85071 -32.63118 -31.28462 -31.11143 -29.58013 -28.46403 -26.53101 -26.03203 -24.36997 -23.63731 -23.06773 -22.21349 -21.10041 -20.35373 -18.50314 -17.49284 -17.02378 -16.77274 -16.56051 -16.42361 -15.75216 -15.51610 -15.08113 -14.82385 -14.71425 -14.52691 -14.19188 -14.07810 -13.77706 -13.67074 -13.60514 -13.19259 -12.97950 -12.67403 -12.40715 -12.26589 -12.16710 -11.94289 -11.84325 -11.74917 -11.69360 -11.52779 -11.42691 -11.15486 -11.02886 -10.89753 -10.83167 -10.61096 -10.55439 -10.15824 -9.82608 -9.68252 -9.53158 -9.22551 -8.76713 -8.63588 -7.97622 -7.76607 -6.12952 -4.11812 0.88180 1.11081 1.91904 3.14720 3.23173 3.31652 3.32819 3.35591 3.66678 3.75690 3.84633 4.35670 4.59073 4.64717 4.68646 4.85275 4.89449 5.00066 5.06137 5.08708 5.17085 5.20048 5.23517 5.29801 5.38611 5.44869 5.46656 5.48901 5.53329 5.64779 5.75448 5.76673 5.82494 5.88997 5.98798 6.00669 6.06107 6.07885 6.20357 6.28776 6.37458 6.58207 6.58654 6.83949 6.90179 6.93765 7.13472 7.25691 7.56080 8.14881 8.41701 8.83616 8.91007 9.47214 11.00420 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.007927 B = 0.003200 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.461502 B = 8746.570120 C =11063.401420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.100 0.900 4 C 0.482 3.518 5 O -0.534 6.534 6 N -0.594 5.594 7 C 0.079 3.921 8 C 0.215 3.785 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.073 3.927 12 N -0.897 5.897 13 Si 0.874 3.126 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.265 1.265 17 N -0.508 5.508 18 C -0.009 4.009 19 C 0.070 3.930 20 O -0.376 6.376 21 C 0.141 3.859 22 H 0.074 0.926 23 C -0.075 4.075 24 C -0.074 4.074 25 C -0.112 4.112 26 C -0.033 4.033 27 Cl -0.076 7.076 28 C -0.114 4.114 29 C -0.097 4.097 30 C 0.014 3.986 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.265 0.735 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.140 0.860 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.079 0.921 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.582 6.676 -21.037 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 H 0.118 0.882 4 C 0.267 3.733 5 O -0.412 6.412 6 N -0.326 5.326 7 C -0.065 4.065 8 C 0.095 3.905 9 C -0.565 4.565 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.190 1.190 17 N -0.232 5.232 18 C -0.137 4.137 19 C -0.007 4.007 20 O -0.295 6.295 21 C 0.083 3.917 22 H 0.092 0.908 23 C -0.076 4.076 24 C -0.092 4.092 25 C -0.131 4.131 26 C -0.060 4.060 27 Cl -0.047 7.047 28 C -0.133 4.133 29 C -0.115 4.115 30 C -0.115 4.115 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.151 0.849 48 H 0.098 0.902 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.813 6.036 -21.284 23.463 hybrid contribution 0.993 -0.284 1.400 1.740 sum 8.806 5.752 -19.884 22.495 Atomic orbital electron populations 1.21836 0.92067 1.03339 1.02757 1.21902 0.97403 0.98686 0.87048 0.88203 1.21471 0.78955 0.87868 0.85005 1.90608 1.51702 1.14761 1.84134 1.47987 1.60959 1.10863 1.12797 1.21746 0.99011 0.82177 1.03560 1.19661 0.94873 0.92918 0.83081 1.21285 0.94296 1.34434 1.06519 0.90834 1.24857 0.97172 0.94791 0.96169 1.69889 1.32105 1.36040 1.15481 0.86876 0.85760 0.78061 0.79217 1.20061 1.20873 1.18970 1.62797 1.04513 1.21235 1.34683 1.23183 0.99400 0.91288 0.99801 1.22654 0.80465 1.01077 0.96497 1.87978 1.18646 1.29035 1.93841 1.20772 0.87762 0.86129 0.96998 0.90800 1.19694 0.94012 0.95463 0.98403 1.21083 0.94511 0.97023 0.96593 1.21121 0.92703 0.99335 0.99907 1.20975 0.84680 0.97394 1.02930 1.98368 1.13135 1.96000 1.97195 1.20952 0.95754 0.96414 1.00135 1.20887 0.92028 0.99267 0.99306 1.22921 0.88678 1.01409 0.98456 0.91243 0.90865 0.91607 0.93626 0.91941 0.90335 0.94427 0.95768 0.92534 0.89409 0.89651 0.88416 0.92810 0.84256 0.84798 0.84849 0.84891 0.90224 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.08 37.16 0.30 -1.46 16 2 C 0.06 0.87 2.15 -68.86 -0.15 0.72 16 3 H 0.10 1.21 7.01 -51.93 -0.36 0.85 16 4 C 0.48 9.24 5.80 -10.99 -0.06 9.17 16 5 O -0.53 -12.33 12.01 5.56 0.07 -12.27 16 6 N -0.59 -11.80 2.86 -182.96 -0.52 -12.33 16 7 C 0.08 1.16 9.71 59.85 0.58 1.74 16 8 C 0.22 5.20 4.18 -5.19 -0.02 5.18 16 9 C -0.53 -14.99 9.94 -34.44 -0.34 -15.33 16 10 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 13 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 17 N -0.51 -6.84 4.81 -227.72 -1.10 -7.94 16 18 C -0.01 -0.13 4.77 -3.71 -0.02 -0.14 16 19 C 0.07 0.82 7.01 37.21 0.26 1.08 16 20 O -0.38 -5.10 9.63 -35.23 -0.34 -5.44 16 21 C 0.14 1.73 3.01 -27.83 -0.08 1.64 16 22 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 23 C -0.07 -0.89 5.01 -104.62 -0.52 -1.41 16 24 C -0.07 -0.93 9.35 -39.59 -0.37 -1.30 16 25 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 26 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 27 Cl -0.08 -0.78 28.96 -51.86 -1.50 -2.28 16 28 C -0.11 -1.11 9.83 -39.55 -0.39 -1.50 16 29 C -0.10 -0.95 9.68 -39.59 -0.38 -1.33 16 30 C 0.01 0.19 4.41 -3.71 -0.02 0.17 16 31 H 0.07 0.82 6.62 -51.93 -0.34 0.48 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.92 6.79 -51.93 -0.35 0.57 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.76 5.34 -51.93 -0.28 0.48 16 36 H 0.08 1.20 8.05 -51.93 -0.42 0.79 16 37 H 0.04 0.99 6.56 -51.93 -0.34 0.65 16 38 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.09 1.56 5.60 -51.93 -0.29 1.27 16 41 H 0.09 1.04 6.23 -51.93 -0.32 0.72 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.14 1.88 7.64 -52.49 -0.40 1.48 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 48 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 49 H 0.07 1.28 5.91 -51.93 -0.31 0.97 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -33.72 397.54 -10.45 -44.17 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.20 Total: 3.06 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.95 Total: -3.08 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.84 Total: -47.03 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.27 Total: -17.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.72 -10.45 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052248188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.489 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds