Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54484 * 2 1 4 4 O 1.42101 * 110.54455 * 136.75675 * 2 1 3 5 5 N 1.65602 * 104.44694 * 248.37606 * 2 1 3 6 6 C 1.46933 * 120.62735 * 90.00024 * 5 2 1 7 7 C 1.53193 * 108.77197 * 126.37033 * 6 5 2 8 8 C 1.53037 * 109.31926 * 54.63379 * 7 6 5 9 9 C 1.53045 * 109.53567 * 298.63689 * 8 7 6 10 10 H 1.08997 * 109.49355 * 301.37791 * 9 8 7 11 11 C 1.50700 * 109.49541 * 181.31157 * 9 8 7 12 12 O 1.21290 * 119.99971 * 247.95688 * 11 9 8 13 13 N 1.34775 * 119.99687 * 67.96455 * 11 9 8 14 14 C 1.37098 * 120.00256 * 5.08190 * 13 11 9 15 15 H 1.08005 * 119.99730 * 234.61674 * 14 13 11 16 16 C 1.38941 * 120.00306 * 54.61067 * 14 13 11 17 17 N 1.31408 * 120.00271 * 18.99811 * 16 14 13 18 18 Si 1.86808 * 120.00046 * 198.99461 * 16 14 13 19 19 H 1.48506 * 109.46729 * 90.00192 * 18 16 14 20 20 H 1.48496 * 109.47186 * 209.99774 * 18 16 14 21 21 H 1.48495 * 109.47051 * 330.00202 * 18 16 14 22 22 C 1.46501 * 119.99976 * 185.07543 * 13 11 9 23 23 C 1.50696 * 109.47114 * 89.44796 * 22 13 11 24 24 C 1.38239 * 120.00268 * 271.83667 * 23 22 13 25 25 C 1.38239 * 119.99635 * 179.74399 * 24 23 22 26 26 C 1.38227 * 120.00295 * 0.54954 * 25 24 23 27 27 C 1.38236 * 119.99992 * 359.70168 * 26 25 24 28 28 C 1.38236 * 119.99858 * 92.10664 * 23 22 13 29 29 C 1.46924 * 120.63228 * 269.72046 * 5 2 1 30 30 H 1.08994 * 109.47318 * 51.61755 * 1 2 3 31 31 H 1.09002 * 109.47566 * 171.62530 * 1 2 3 32 32 H 1.09002 * 109.46739 * 291.62209 * 1 2 3 33 33 H 1.08997 * 109.58424 * 246.15623 * 6 5 2 34 34 H 1.09000 * 109.58503 * 6.58246 * 6 5 2 35 35 H 1.09000 * 109.49552 * 174.59210 * 7 6 5 36 36 H 1.09002 * 109.49516 * 294.64826 * 7 6 5 37 37 H 1.09000 * 109.45493 * 58.65059 * 8 7 6 38 38 H 1.08988 * 109.46461 * 178.61472 * 8 7 6 39 39 H 0.96998 * 120.00816 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47556 * 209.45078 * 22 13 11 41 41 H 1.09003 * 109.46955 * 329.45056 * 22 13 11 42 42 H 1.07993 * 119.99722 * 359.97438 * 24 23 22 43 43 H 1.08007 * 119.99289 * 180.26993 * 25 24 23 44 44 H 1.08001 * 119.99840 * 179.72853 * 26 25 24 45 45 H 1.08001 * 120.00169 * 180.02562 * 27 26 25 46 46 H 1.07997 * 120.00313 * 359.97438 * 28 23 22 47 47 H 1.09001 * 109.58490 * 353.42115 * 29 5 2 48 48 H 1.08997 * 109.58388 * 113.84797 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 0.9116 5 7 2.2271 -0.5910 -1.4908 6 6 2.4139 0.3173 -2.6306 7 6 3.7922 0.0579 -3.2469 8 6 3.9184 -1.4262 -3.5986 9 6 3.7927 -2.2663 -2.3255 10 1 4.5687 -1.9733 -1.6184 11 6 3.9492 -3.7254 -2.6684 12 8 3.0026 -4.4769 -2.5677 13 7 5.1412 -4.1952 -3.0867 14 6 6.2363 -3.3705 -3.1011 15 1 6.8033 -3.2417 -4.0113 16 6 6.6167 -2.7003 -1.9449 17 7 6.1904 -3.1167 -0.7737 18 14 7.7341 -1.2074 -2.0554 19 1 6.9088 0.0191 -2.1974 20 1 8.5553 -1.1113 -0.8219 21 1 8.6262 -1.3430 -3.2348 22 6 5.2667 -5.5872 -3.5258 23 6 4.9841 -5.6751 -5.0034 24 6 3.6882 -5.8556 -5.4498 25 6 3.4284 -5.9310 -6.8054 26 6 4.4657 -5.8373 -7.7143 27 6 5.7622 -5.6621 -7.2677 28 6 6.0213 -5.5810 -5.9123 29 6 2.4199 -2.0328 -1.6974 30 1 -0.3634 0.6380 -0.8055 31 1 -0.3634 -1.0167 -0.1497 32 1 -0.3633 0.3787 0.9554 33 1 1.6399 0.1327 -3.3755 34 1 2.3553 1.3504 -2.2880 35 1 3.9051 0.6569 -4.1506 36 1 4.5678 0.3299 -2.5310 37 1 3.1273 -1.7026 -4.2957 38 1 4.8888 -1.6088 -4.0599 39 1 6.4556 -2.6486 0.0334 40 1 6.2785 -5.9409 -3.3277 41 1 4.5526 -6.2055 -2.9819 42 1 2.8785 -5.9339 -4.7395 43 1 2.4154 -6.0676 -7.1543 44 1 4.2632 -5.9007 -8.7732 45 1 6.5726 -5.5885 -7.9778 46 1 7.0342 -5.4440 -5.5635 47 1 2.3652 -2.5497 -0.7393 48 1 1.6464 -2.4128 -2.3647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054246129.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -72.134340 kcal Electronic energy + Delta-G solvation = -33020.874879 eV Core-core repulsion = 28782.107563 eV Total energy + Delta-G solvation = -4238.767316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.145 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.44579 -38.53327 -37.10694 -36.93180 -35.73189 -34.71141 -32.72698 -31.81203 -30.59974 -30.41557 -30.32680 -29.44935 -25.98993 -24.76385 -24.05386 -22.99856 -22.05743 -20.96628 -20.27542 -19.14924 -18.44529 -17.63004 -16.79756 -16.27390 -16.12366 -15.87852 -15.35943 -15.06050 -14.76758 -14.51048 -14.34390 -14.16918 -13.94812 -13.76340 -13.56316 -13.23590 -13.11313 -12.94146 -12.90457 -12.81490 -12.29926 -12.19491 -11.92341 -11.89649 -11.79622 -11.58033 -11.48884 -11.18265 -11.15276 -11.00757 -10.90545 -10.75369 -10.68437 -10.51980 -10.40205 -10.28458 -10.18054 -9.81618 -8.88976 -8.57189 -8.49662 -8.45622 -8.06395 -7.33307 -6.43036 -4.26498 0.37744 1.81544 1.87063 2.79285 3.11114 3.20469 3.23132 4.00093 4.03554 4.08073 4.22792 4.28739 4.67033 4.86520 4.90316 4.97973 5.07488 5.31804 5.33882 5.36284 5.44631 5.45996 5.59115 5.67836 5.72278 5.80458 5.86831 5.94918 6.01990 6.03866 6.17579 6.22751 6.28290 6.38768 6.45618 6.49092 6.59104 6.67951 6.68743 6.81008 6.91045 6.94267 6.95406 7.04912 7.25250 7.27126 7.41430 7.49020 7.93252 8.60942 8.90495 9.54358 9.98245 10.60834 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.003883 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.204383 B = 7208.676592 C = 8311.221648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.605 3.395 3 O -0.961 6.961 4 O -0.946 6.946 5 N -0.996 5.996 6 C 0.120 3.880 7 C -0.131 4.131 8 C -0.102 4.102 9 C -0.106 4.106 10 H 0.121 0.879 11 C 0.529 3.471 12 O -0.609 6.609 13 N -0.444 5.444 14 C -0.344 4.344 15 H 0.081 0.919 16 C 0.056 3.944 17 N -0.847 5.847 18 Si 0.895 3.105 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.145 3.855 23 C -0.078 4.078 24 C -0.102 4.102 25 C -0.129 4.129 26 C -0.133 4.133 27 C -0.130 4.130 28 C -0.104 4.104 29 C 0.138 3.862 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.274 0.726 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.092 0.908 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 4.016 -6.348 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.698 3.302 3 O -0.952 6.952 4 O -0.936 6.936 5 N -0.835 5.835 6 C -0.006 4.006 7 C -0.170 4.170 8 C -0.140 4.140 9 C -0.128 4.128 10 H 0.138 0.862 11 C 0.319 3.681 12 O -0.495 6.495 13 N -0.163 5.163 14 C -0.472 4.472 15 H 0.098 0.902 16 C -0.152 4.152 17 N -0.481 5.481 18 Si 0.720 3.280 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.191 1.191 22 C 0.022 3.978 23 C -0.079 4.079 24 C -0.120 4.120 25 C -0.148 4.148 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.122 4.122 29 C 0.013 3.987 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.139 0.861 47 H 0.111 0.889 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.392 3.932 -5.377 9.950 hybrid contribution 0.061 0.684 -0.220 0.721 sum -7.331 4.615 -5.597 10.314 Atomic orbital electron populations 1.30629 1.29696 1.11485 1.10714 1.04980 0.77581 0.74062 0.73552 1.93571 1.77472 1.38182 1.85959 1.93644 1.76954 1.61133 1.61861 1.57628 1.83715 1.15360 1.26781 1.21449 0.98165 0.92861 0.88099 1.21890 0.96674 0.97797 1.00626 1.21366 1.03308 0.92729 0.96592 1.21380 0.98228 0.93893 0.99342 0.86167 1.20060 0.81892 0.88861 0.77318 1.90471 1.40503 1.59664 1.58832 1.43134 1.07311 1.07045 1.58766 1.19101 1.08301 1.24004 0.95765 0.90163 1.25567 0.96133 0.98664 0.94832 1.69971 1.43123 1.37245 0.97762 0.86457 0.80555 0.82707 0.78284 1.19194 1.20777 1.19116 1.20371 1.01415 0.87363 0.88662 1.20556 0.93066 0.97011 0.97289 1.21250 0.96930 0.98480 0.95384 1.21070 0.98527 1.01635 0.93526 1.20991 0.93225 1.02109 0.98842 1.21044 0.96476 1.01611 0.95665 1.21108 0.99263 0.99183 0.92689 1.21223 0.97912 0.77124 1.02405 0.85717 0.85342 0.85950 0.91748 0.89506 0.91210 0.91333 0.93045 0.89358 0.91542 0.90788 0.91109 0.85647 0.86901 0.87049 0.86848 0.86149 0.88942 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -6.38 10.99 101.05 1.11 -5.27 16 2 S 2.61 38.19 6.10 -107.50 -0.66 37.54 16 3 O -0.96 -16.10 16.59 -57.54 -0.95 -17.06 16 4 O -0.95 -17.94 16.58 -57.54 -0.95 -18.90 16 5 N -1.00 -15.59 3.23 -113.76 -0.37 -15.96 16 6 C 0.12 1.63 6.43 -3.71 -0.02 1.61 16 7 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 8 C -0.10 -1.89 5.03 -26.69 -0.13 -2.02 16 9 C -0.11 -2.27 1.81 -91.87 -0.17 -2.44 16 10 H 0.12 2.91 4.79 -51.93 -0.25 2.66 16 11 C 0.53 12.64 6.36 -10.99 -0.07 12.57 16 12 O -0.61 -15.29 15.01 5.55 0.08 -15.21 16 13 N -0.44 -10.41 2.38 -116.10 -0.28 -10.69 16 14 C -0.34 -8.15 6.97 -14.94 -0.10 -8.25 16 15 H 0.08 1.87 7.90 -52.48 -0.41 1.46 16 16 C 0.06 1.37 3.43 -17.47 -0.06 1.31 16 17 N -0.85 -22.24 11.87 55.49 0.66 -21.58 16 18 Si 0.89 19.04 29.59 -169.99 -5.03 14.01 16 19 H -0.27 -5.57 7.05 56.52 0.40 -5.17 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C 0.15 3.08 5.54 -5.20 -0.03 3.05 16 23 C -0.08 -1.46 5.46 -104.62 -0.57 -2.03 16 24 C -0.10 -1.82 9.71 -39.58 -0.38 -2.21 16 25 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 26 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 27 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 28 C -0.10 -1.75 9.69 -39.58 -0.38 -2.14 16 29 C 0.14 2.60 5.13 -3.93 -0.02 2.58 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.13 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.12 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.07 6.86 -51.93 -0.36 0.71 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.76 6.38 -51.94 -0.33 1.43 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.07 1.52 7.96 -51.93 -0.41 1.11 16 41 H 0.07 1.56 7.33 -51.93 -0.38 1.18 16 42 H 0.13 2.38 7.63 -52.49 -0.40 1.98 16 43 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 47 H 0.09 1.88 6.85 -51.93 -0.36 1.53 16 48 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -31.81 396.39 -10.81 -42.62 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -7.09 Total: 11.70 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.19 Total: -12.47 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.02 Total: -48.22 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.83 Total: -51.16 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 16 Polarization: 38.19 SS G_CDS: -0.66 Total: 37.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.81 -10.81 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246129.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.513 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds