Wall clock time and date at job start Tue Mar 31 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33390 * 125.19803 * 2 1 4 4 C 1.38427 * 114.92007 * 180.02562 * 3 2 1 5 5 C 1.33388 * 114.91673 * 359.97438 * 4 3 2 6 6 S 1.76205 * 125.19904 * 179.97438 * 5 4 3 7 7 O 1.42097 * 106.40282 * 341.52656 * 6 5 4 8 8 O 1.42101 * 106.39905 * 208.60826 * 6 5 4 9 9 N 1.65596 * 107.21832 * 95.06889 * 6 5 4 10 10 C 1.39661 * 120.00168 * 298.39995 * 9 6 5 11 11 C 1.38973 * 120.04624 * 313.81063 * 10 9 6 12 12 C 1.38117 * 120.03673 * 179.97438 * 11 10 9 13 13 C 1.38215 * 120.12741 * 359.74632 * 12 11 10 14 14 C 1.38776 * 120.09274 * 0.50973 * 13 12 11 15 15 O 1.35893 * 120.01827 * 179.77152 * 14 13 12 16 16 C 1.42898 * 117.00337 * 359.71693 * 15 14 13 17 17 C 1.52997 * 109.47674 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47285 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99905 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00226 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47283 * 59.99874 * 22 20 18 24 24 H 1.48502 * 109.47266 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47319 * 299.99949 * 22 20 18 26 26 C 1.38619 * 119.96223 * 359.48801 * 14 13 12 27 27 S 1.75879 * 125.20555 * 180.32325 * 2 1 3 28 28 H 1.08997 * 109.47198 * 90.00494 * 1 2 3 29 29 H 1.09001 * 109.47059 * 210.00097 * 1 2 3 30 30 H 1.08996 * 109.47382 * 329.99969 * 1 2 3 31 31 H 1.07997 * 122.54333 * 0.02562 * 3 2 1 32 32 H 1.07995 * 122.54164 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99613 * 118.39971 * 9 6 5 34 34 H 1.07999 * 119.98583 * 359.95176 * 11 10 9 35 35 H 1.07995 * 119.93361 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.95810 * 180.27282 * 13 12 11 37 37 H 1.09001 * 109.47050 * 300.00559 * 16 15 14 38 38 H 1.08998 * 109.46677 * 60.00169 * 16 15 14 39 39 H 1.09001 * 109.47066 * 300.00216 * 17 16 15 40 40 H 1.09007 * 109.46834 * 59.99718 * 17 16 15 41 41 H 0.96997 * 120.00430 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.06093 * 180.27853 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0006 5 6 3.9750 -0.4476 -0.0005 6 16 5.6248 -1.0664 -0.0017 7 8 6.4542 0.0031 -0.4347 8 8 5.5796 -2.3280 -0.6541 9 7 6.0361 -1.3689 1.5735 10 6 6.0622 -0.3253 2.5013 11 6 6.6796 0.8773 2.1786 12 6 6.7048 1.9094 3.0961 13 6 6.1121 1.7513 4.3346 14 6 5.4987 0.5509 4.6644 15 8 4.9205 0.3956 5.8843 16 6 4.9867 1.5070 6.7800 17 6 4.2879 1.1467 8.0925 18 6 4.3573 2.3191 9.0368 19 1 4.8508 3.2300 8.7315 20 6 3.7916 2.2285 10.2909 21 7 3.1911 1.1192 10.6630 22 14 3.8781 3.6815 11.4618 23 1 3.2033 4.8530 10.8476 24 1 3.1998 3.3318 12.7357 25 1 5.2996 4.0149 11.7326 26 6 5.4711 -0.4875 3.7465 27 16 2.5210 -1.4371 -0.0081 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.8668 2.0895 0.0004 32 1 4.3720 1.6352 -0.0002 33 1 6.2589 -2.2710 1.8519 34 1 7.1402 1.0047 1.2102 35 1 7.1847 2.8433 2.8435 36 1 6.1296 2.5618 5.0483 37 1 6.0301 1.7513 6.9794 38 1 4.4920 2.3671 6.3288 39 1 3.2445 0.9022 7.8935 40 1 4.7830 0.2866 8.5435 41 1 2.7928 1.0556 11.5451 42 1 4.9903 -1.4207 3.9998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055640036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:42 Heat of formation + Delta-G solvation = -60.754175 kcal Electronic energy + Delta-G solvation = -27472.823963 eV Core-core repulsion = 23443.751243 eV Total energy + Delta-G solvation = -4029.072720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00336 -38.42930 -37.93001 -37.37076 -36.24100 -34.75364 -33.40745 -32.55121 -30.97516 -29.55365 -28.74330 -27.49041 -25.12555 -23.68952 -22.80929 -22.36974 -20.89477 -20.70102 -19.44331 -18.57839 -18.06701 -17.75585 -16.58162 -16.50354 -16.14480 -15.63772 -15.56758 -15.38670 -15.11773 -14.84424 -14.54649 -14.45374 -13.75661 -13.58600 -13.23187 -13.13661 -13.01447 -12.79122 -12.65354 -12.50741 -12.45036 -12.42054 -12.34413 -11.84254 -11.63544 -11.60503 -11.28522 -11.19009 -10.96699 -10.86647 -10.69276 -10.52490 -9.92006 -9.71407 -9.42972 -9.36694 -8.88178 -8.62317 -8.48679 -7.97186 -6.14687 -4.19750 -0.13981 0.20997 1.05714 1.31037 1.40162 1.53042 2.10839 2.60693 3.25451 3.30141 3.30459 3.31593 3.74677 3.76297 4.18454 4.28647 4.37108 4.74804 4.77949 4.94744 4.99558 5.03469 5.11225 5.21774 5.23877 5.30823 5.39582 5.52972 5.53714 5.65208 5.71663 5.87200 5.96268 5.96350 5.97649 6.28367 6.43946 6.49790 6.58789 6.64781 6.92176 7.43774 7.58014 7.74339 7.97010 8.18373 8.85633 9.44861 10.96797 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.002277 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.159145 B =12295.633880 C =13524.722574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.132 4.132 3 C -0.172 4.172 4 C 0.024 3.976 5 C -0.799 4.799 6 S 2.721 3.279 7 O -0.941 6.941 8 O -0.951 6.951 9 N -1.052 6.052 10 C 0.174 3.826 11 C -0.201 4.201 12 C -0.058 4.058 13 C -0.216 4.216 14 C 0.162 3.838 15 O -0.314 6.314 16 C 0.064 3.936 17 C 0.026 3.974 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.171 4.171 27 S 0.211 5.789 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.428 0.572 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -2.929 -24.639 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.252 4.252 3 C -0.202 4.202 4 C -0.012 4.012 5 C -1.001 5.001 6 S 2.809 3.191 7 O -0.931 6.931 8 O -0.941 6.941 9 N -0.804 5.804 10 C 0.079 3.921 11 C -0.222 4.222 12 C -0.076 4.076 13 C -0.236 4.236 14 C 0.114 3.886 15 O -0.226 6.226 16 C -0.009 4.009 17 C -0.011 4.011 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.193 4.193 27 S 0.477 5.523 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.265 0.735 34 H 0.169 0.831 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.524 -4.789 -25.231 25.687 hybrid contribution -0.222 2.303 1.317 2.663 sum -0.745 -2.486 -23.914 24.054 Atomic orbital electron populations 1.20529 0.86981 1.04261 1.03460 1.25193 1.00860 0.96850 1.02295 1.20344 0.92716 1.00044 1.07071 1.20027 0.96996 0.94496 0.89640 1.35552 1.26492 1.07450 1.30636 1.01301 0.72734 0.73451 0.71593 1.93565 1.63748 1.56655 1.79118 1.93618 1.87075 1.41780 1.71630 1.53158 1.82215 1.16809 1.28186 1.16926 0.97707 0.87795 0.89715 1.21602 1.04008 0.93645 1.02924 1.20791 0.96462 0.98211 0.92170 1.21494 1.04676 0.98190 0.99242 1.18929 0.90935 0.92781 0.85966 1.86180 1.71775 1.42902 1.21777 1.23379 1.00756 0.86308 0.90506 1.19119 0.96285 0.98014 0.87701 1.20926 1.37445 0.99302 0.98984 0.92377 1.24985 0.94927 0.96147 0.98064 1.69959 1.36377 1.26036 1.20367 0.86544 0.78392 0.82413 0.80004 1.20082 1.21106 1.20057 1.20290 1.05705 1.00139 0.93190 1.84118 0.92298 1.06237 1.69696 0.89820 0.90528 0.89587 0.83205 0.82599 0.73470 0.83061 0.85259 0.84805 0.92914 0.92971 0.95427 0.95382 0.92606 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.38 36.01 0.37 -0.17 16 2 C -0.13 -1.14 6.51 -36.00 -0.23 -1.38 16 3 C -0.17 -1.53 10.05 -41.21 -0.41 -1.94 16 4 C 0.02 0.24 9.82 -41.21 -0.40 -0.17 16 5 C -0.80 -8.62 6.43 29.04 0.19 -8.44 16 6 S 2.72 30.42 5.79 -107.50 -0.62 29.80 16 7 O -0.94 -11.90 14.84 -57.17 -0.85 -12.75 16 8 O -0.95 -12.35 17.96 -57.17 -1.03 -13.38 16 9 N -1.05 -10.75 5.76 32.40 0.19 -10.56 16 10 C 0.17 2.14 6.13 -83.81 -0.51 1.63 16 11 C -0.20 -2.46 9.22 -39.35 -0.36 -2.82 16 12 C -0.06 -0.70 10.03 -39.63 -0.40 -1.10 16 13 C -0.22 -3.09 9.04 -39.39 -0.36 -3.45 16 14 C 0.16 2.62 6.68 -39.24 -0.26 2.36 16 15 O -0.31 -6.09 10.13 -19.40 -0.20 -6.29 16 16 C 0.06 1.31 4.68 37.16 0.17 1.49 16 17 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 18 C -0.53 -14.36 9.11 -34.44 -0.31 -14.67 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 22 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.17 -2.39 9.91 -39.24 -0.39 -2.78 16 27 S 0.21 2.07 23.26 -107.50 -2.50 -0.43 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.16 1.35 7.99 -52.49 -0.42 0.93 16 33 H 0.43 3.33 8.96 -34.46 -0.31 3.02 16 34 H 0.15 1.78 5.70 -52.49 -0.30 1.48 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.86 6.29 -52.49 -0.33 1.53 16 37 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 38 H 0.05 1.00 7.65 -51.93 -0.40 0.61 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -33.21 385.86 -11.71 -44.92 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.08 Total: 1.63 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -3.16 Total: -29.33 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.92 Total: -35.82 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -2.07 Total: -32.42 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 32.49 SS G_CDS: -3.12 Total: 29.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.21 -11.71 -44.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055640036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.832 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds