Wall clock time and date at job start Tue Mar 31 2020 05:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33390 * 125.19803 * 2 1 4 4 C 1.38427 * 114.92007 * 180.02562 * 3 2 1 5 5 C 1.33388 * 114.91673 * 359.97438 * 4 3 2 6 6 S 1.76205 * 125.19904 * 179.97438 * 5 4 3 7 7 O 1.42097 * 106.40282 * 341.52656 * 6 5 4 8 8 O 1.42101 * 106.39905 * 208.60826 * 6 5 4 9 9 N 1.65596 * 107.21832 * 95.06889 * 6 5 4 10 10 C 1.39661 * 120.00168 * 298.39995 * 9 6 5 11 11 C 1.38973 * 120.04624 * 313.81063 * 10 9 6 12 12 C 1.38117 * 120.03673 * 179.97438 * 11 10 9 13 13 C 1.38215 * 120.12741 * 359.74632 * 12 11 10 14 14 C 1.38776 * 120.09274 * 0.50973 * 13 12 11 15 15 O 1.35893 * 120.01827 * 179.77152 * 14 13 12 16 16 C 1.42898 * 117.00337 * 359.71693 * 15 14 13 17 17 C 1.52997 * 109.47674 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47285 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00357 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99905 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00226 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47283 * 59.99874 * 22 20 18 24 24 H 1.48502 * 109.47266 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47319 * 299.99949 * 22 20 18 26 26 C 1.38619 * 119.96223 * 359.48801 * 14 13 12 27 27 S 1.75879 * 125.20555 * 180.32325 * 2 1 3 28 28 H 1.08997 * 109.47198 * 90.00494 * 1 2 3 29 29 H 1.09001 * 109.47059 * 210.00097 * 1 2 3 30 30 H 1.08996 * 109.47382 * 329.99969 * 1 2 3 31 31 H 1.07997 * 122.54333 * 0.02562 * 3 2 1 32 32 H 1.07995 * 122.54164 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99613 * 118.39971 * 9 6 5 34 34 H 1.07999 * 119.98583 * 359.95176 * 11 10 9 35 35 H 1.07995 * 119.93361 * 180.02562 * 12 11 10 36 36 H 1.07999 * 119.95810 * 180.27282 * 13 12 11 37 37 H 1.09001 * 109.47050 * 300.00559 * 16 15 14 38 38 H 1.08998 * 109.46677 * 60.00169 * 16 15 14 39 39 H 1.09001 * 109.47066 * 300.00216 * 17 16 15 40 40 H 1.09007 * 109.46834 * 59.99718 * 17 16 15 41 41 H 0.96997 * 120.00430 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.06093 * 180.27853 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0006 5 6 3.9750 -0.4476 -0.0005 6 16 5.6248 -1.0664 -0.0017 7 8 6.4542 0.0031 -0.4347 8 8 5.5796 -2.3280 -0.6541 9 7 6.0361 -1.3689 1.5735 10 6 6.0622 -0.3253 2.5013 11 6 6.6796 0.8773 2.1786 12 6 6.7048 1.9094 3.0961 13 6 6.1121 1.7513 4.3346 14 6 5.4987 0.5509 4.6644 15 8 4.9205 0.3956 5.8843 16 6 4.9867 1.5070 6.7800 17 6 4.2879 1.1467 8.0925 18 6 4.3573 2.3191 9.0368 19 1 4.8508 3.2300 8.7315 20 6 3.7916 2.2285 10.2909 21 7 3.1911 1.1192 10.6630 22 14 3.8781 3.6815 11.4618 23 1 3.2033 4.8530 10.8476 24 1 3.1998 3.3318 12.7357 25 1 5.2996 4.0149 11.7326 26 6 5.4711 -0.4875 3.7465 27 16 2.5210 -1.4371 -0.0081 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.8668 2.0895 0.0004 32 1 4.3720 1.6352 -0.0002 33 1 6.2589 -2.2710 1.8519 34 1 7.1402 1.0047 1.2102 35 1 7.1847 2.8433 2.8435 36 1 6.1296 2.5618 5.0483 37 1 6.0301 1.7513 6.9794 38 1 4.4920 2.3671 6.3288 39 1 3.2445 0.9022 7.8935 40 1 4.7830 0.2866 8.5435 41 1 2.7928 1.0556 11.5451 42 1 4.9903 -1.4207 3.9998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055640036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:41 Heat of formation + Delta-G solvation = -81.712325 kcal Electronic energy + Delta-G solvation = -27473.732777 eV Core-core repulsion = 23443.751243 eV Total energy + Delta-G solvation = -4029.981534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.074 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18441 -39.27658 -38.99960 -38.36264 -37.20353 -35.86306 -35.33435 -33.16457 -32.59862 -30.97081 -29.82068 -28.12732 -26.99255 -24.37108 -24.09224 -23.59440 -22.33886 -21.61192 -20.36818 -19.64119 -18.94794 -18.77371 -18.28870 -17.39295 -17.23836 -16.93691 -16.87762 -16.75812 -16.39183 -16.07339 -15.57903 -15.04233 -14.78729 -14.51126 -14.41299 -14.31218 -14.14519 -13.88502 -13.72892 -13.54156 -13.41189 -13.33098 -13.24674 -13.14544 -13.13184 -12.71436 -12.56436 -12.45726 -12.31204 -12.14220 -11.90874 -11.82319 -11.57303 -11.41687 -11.37872 -10.59895 -10.12471 -9.65416 -9.62926 -9.14793 -8.25281 -6.38729 -1.00169 -0.55543 0.25949 0.33189 0.43417 0.68896 1.38685 1.42582 1.45938 1.53830 1.72651 2.28870 2.42943 2.52827 2.69776 3.09518 3.28436 3.70679 3.83026 3.94467 4.14512 4.17170 4.24610 4.30805 4.31020 4.32811 4.52112 4.53613 4.62489 4.64578 4.76843 4.78752 4.96469 4.99638 5.05203 5.27390 5.31697 5.33885 5.38498 5.49412 5.50696 5.65861 5.73651 5.94231 6.08969 6.53403 6.76412 7.31577 8.87540 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.002277 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.159145 B =12295.633880 C =13524.722574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.125 4.125 3 C -0.184 4.184 4 C 0.022 3.978 5 C -0.819 4.819 6 S 2.737 3.263 7 O -0.955 6.955 8 O -0.971 6.971 9 N -1.045 6.045 10 C 0.182 3.818 11 C -0.197 4.197 12 C -0.048 4.048 13 C -0.221 4.221 14 C 0.131 3.869 15 O -0.338 6.338 16 C 0.083 3.917 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.072 0.928 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.973 3.027 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.264 1.264 26 C -0.176 4.176 27 S 0.188 5.812 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.438 0.562 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.137 0.863 37 H 0.064 0.936 38 H 0.065 0.935 39 H -0.002 1.002 40 H -0.003 1.003 41 H 0.266 0.734 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.261 -0.778 -25.710 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.245 4.245 3 C -0.213 4.213 4 C -0.014 4.014 5 C -1.022 5.022 6 S 2.827 3.173 7 O -0.945 6.945 8 O -0.961 6.961 9 N -0.799 5.799 10 C 0.086 3.914 11 C -0.218 4.218 12 C -0.067 4.067 13 C -0.241 4.241 14 C 0.084 3.916 15 O -0.252 6.252 16 C 0.009 3.991 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.091 0.909 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.199 4.199 27 S 0.454 5.546 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.191 0.809 32 H 0.185 0.815 33 H 0.278 0.722 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.075 0.925 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.250 -2.656 -26.334 26.469 hybrid contribution -0.334 1.579 1.507 2.208 sum -0.583 -1.078 -24.827 24.857 Atomic orbital electron populations 1.20689 0.84939 1.05047 1.04805 1.25608 1.02170 0.95914 1.00788 1.20642 0.92325 1.01241 1.07140 1.20336 0.97968 0.94439 0.88666 1.35403 1.26164 1.08031 1.32616 1.00617 0.72641 0.72706 0.71310 1.93535 1.64588 1.56920 1.79505 1.93590 1.87500 1.42828 1.72213 1.53048 1.82108 1.17142 1.27555 1.16909 0.96936 0.88349 0.89221 1.21841 1.03220 0.93457 1.03283 1.21116 0.95313 0.99331 0.90892 1.21608 1.04724 0.97482 1.00277 1.19194 0.92716 0.94523 0.85129 1.86091 1.73249 1.42551 1.23308 1.22914 1.00664 0.86763 0.88753 1.18956 0.94780 0.96751 0.90413 1.21387 1.37298 1.00112 0.99564 0.90940 1.26015 0.94339 0.99157 1.00106 1.70109 1.37488 1.28488 1.20995 0.85373 0.78929 0.78687 0.77311 1.18760 1.20992 1.18861 1.20376 1.05992 0.99974 0.93549 1.84174 0.92717 1.07425 1.70313 0.88065 0.90105 0.88393 0.80927 0.81485 0.72222 0.82110 0.81997 0.84473 0.91815 0.91727 0.98351 0.98412 0.92493 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.38 71.24 0.74 -0.17 16 2 C -0.12 -1.96 6.51 24.59 0.16 -1.80 16 3 C -0.18 -2.92 10.05 21.22 0.21 -2.71 16 4 C 0.02 0.40 9.82 21.22 0.21 0.61 16 5 C -0.82 -16.99 6.43 66.72 0.43 -16.56 16 6 S 2.74 59.13 5.79 -56.49 -0.33 58.80 16 7 O -0.96 -22.93 14.84 -128.00 -1.90 -24.83 16 8 O -0.97 -24.97 17.96 -128.00 -2.30 -27.27 16 9 N -1.05 -20.46 5.76 -51.41 -0.30 -20.76 16 10 C 0.18 4.26 6.13 38.20 0.23 4.49 16 11 C -0.20 -4.39 9.22 22.42 0.21 -4.18 16 12 C -0.05 -1.04 10.03 22.24 0.22 -0.81 16 13 C -0.22 -5.99 9.04 22.39 0.20 -5.79 16 14 C 0.13 4.20 6.68 22.49 0.15 4.35 16 15 O -0.34 -13.42 10.13 -92.35 -0.94 -14.36 16 16 C 0.08 3.43 4.68 71.98 0.34 3.76 16 17 C 0.03 1.49 5.34 29.85 0.16 1.65 16 18 C -0.55 -29.88 9.11 25.60 0.23 -29.65 16 19 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 20 C 0.00 0.14 5.46 84.65 0.46 0.60 16 21 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 22 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 C -0.18 -4.89 9.91 22.49 0.22 -4.67 16 27 S 0.19 3.60 23.26 -56.49 -1.31 2.29 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.17 2.57 7.99 -2.91 -0.02 2.55 16 33 H 0.44 6.56 8.96 -96.75 -0.87 5.70 16 34 H 0.16 3.37 5.70 -2.91 -0.02 3.35 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.14 3.57 6.29 -2.91 -0.02 3.56 16 37 H 0.06 2.44 7.67 -2.39 -0.02 2.43 16 38 H 0.06 2.46 7.65 -2.39 -0.02 2.44 16 39 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -72.23 385.86 -0.38 -72.61 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.20 Total: 15.39 kcal Atomic # 6 Polarization: -55.06 SS G_CDS: 4.18 Total: -50.88 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -0.01 Total: -76.21 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -5.13 Total: -66.46 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 62.73 SS G_CDS: -1.64 Total: 61.09 kcal Total: -72.23 -0.38 -72.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055640036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.103 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds