Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46877 * 269.99618 * 3 2 1 5 5 H 1.48492 * 109.47209 * 29.99757 * 3 2 1 6 6 H 1.48506 * 109.46869 * 149.99947 * 3 2 1 7 7 C 1.38799 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99962 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00463 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00219 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47268 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99740 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99747 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47584 * 324.99346 * 14 13 11 16 16 C 1.50695 * 109.47342 * 85.00013 * 14 13 11 17 17 C 1.38422 * 122.53779 * 219.73155 * 16 14 13 18 18 C 1.33395 * 114.91909 * 179.75512 * 17 16 14 19 19 S 1.75881 * 109.59143 * 0.48716 * 18 17 16 20 20 C 1.33388 * 122.53957 * 40.02379 * 16 14 13 21 21 C 1.50706 * 109.46786 * 204.99952 * 14 13 11 22 22 C 1.38244 * 119.98773 * 139.99975 * 21 14 13 23 23 C 1.38217 * 120.01084 * 180.02562 * 22 21 14 24 24 C 1.38351 * 119.98541 * 0.25893 * 23 22 21 25 25 Cl 1.73604 * 120.00786 * 179.69323 * 24 23 22 26 26 C 1.38349 * 119.97465 * 359.42086 * 24 23 22 27 27 C 1.38212 * 119.98525 * 0.59771 * 26 24 23 28 28 H 0.96996 * 119.99972 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47367 * 60.00320 * 10 9 7 30 30 H 1.08999 * 109.47161 * 300.00083 * 10 9 7 31 31 H 0.97000 * 119.99443 * 359.97438 * 13 11 10 32 32 H 1.07998 * 122.54406 * 0.02562 * 17 16 14 33 33 H 1.08006 * 125.20457 * 180.20595 * 18 17 16 34 34 H 1.07999 * 125.20488 * 359.97438 * 20 16 14 35 35 H 1.07999 * 119.99331 * 0.02562 * 22 21 14 36 36 H 1.08002 * 120.00169 * 179.97438 * 23 22 21 37 37 H 1.08008 * 120.00633 * 180.29755 * 26 24 23 38 38 H 1.08001 * 119.99190 * 179.72131 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3028 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8441 -6.3432 0.0033 14 6 2.3303 -7.7151 0.0023 15 1 1.4134 -7.7602 0.5902 16 6 2.0407 -8.1421 -1.4136 17 6 0.9287 -8.8939 -1.7518 18 6 0.8188 -9.1823 -3.0496 19 16 2.1818 -8.4956 -3.9238 20 6 2.8394 -7.8290 -2.4350 21 6 3.3590 -8.6372 0.6046 22 6 2.9622 -9.6585 1.4476 23 6 3.9053 -10.5041 2.0007 24 6 5.2470 -10.3249 1.7148 25 17 6.4327 -11.3817 2.4156 26 6 5.6429 -9.3067 0.8659 27 6 4.6989 -8.4615 0.3137 28 1 -0.4850 0.8400 -0.0004 29 1 3.1237 -3.7311 0.8925 30 1 3.1251 -3.7318 -0.8874 31 1 3.8008 -6.1835 0.0043 32 1 0.2028 -9.2186 -1.0212 33 1 0.0179 -9.7541 -3.4947 34 1 3.7503 -7.2538 -2.3594 35 1 1.9151 -9.7957 1.6739 36 1 3.5952 -11.3017 2.6595 37 1 6.6898 -9.1693 0.6386 38 1 5.0082 -7.6638 -0.3454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057084632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = 17.685086 kcal Electronic energy + Delta-G solvation = -24436.394288 eV Core-core repulsion = 20715.599019 eV Total energy + Delta-G solvation = -3720.795269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 367.021 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57028 -39.00269 -37.88610 -36.79753 -34.64224 -32.44244 -31.75197 -31.40396 -29.70016 -28.94730 -26.50608 -25.47059 -23.58801 -23.18850 -21.61085 -20.33258 -18.89397 -18.18419 -17.85249 -17.45167 -16.48048 -16.34652 -15.74247 -15.55524 -14.96030 -14.81678 -14.52283 -14.09011 -13.92241 -13.90486 -13.60557 -13.29003 -13.18056 -12.96622 -12.78461 -12.57927 -12.31718 -12.01340 -11.88763 -11.68786 -11.62088 -11.17790 -11.07651 -11.03843 -10.91076 -10.77942 -9.83847 -9.54798 -9.43292 -9.18412 -9.07540 -8.95384 -8.83257 -8.45163 -8.25587 -6.51502 -6.23062 -3.93645 0.67138 0.90064 0.95851 1.58876 1.76562 1.90088 2.55690 2.98038 3.03668 3.21325 3.23707 3.27899 3.31676 3.65827 4.18962 4.35851 4.38314 4.48708 4.83572 4.87839 4.90013 4.98324 5.05965 5.12244 5.25927 5.28822 5.31523 5.51188 5.53902 5.65014 5.78261 5.83152 5.85008 5.91500 6.07665 6.10479 6.19279 6.31415 6.38932 6.56120 7.57564 7.59488 8.33743 8.54059 9.22360 10.84337 Molecular weight = 367.02amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.002454 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.806755 B =11408.545705 C =13321.225593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.509 6.509 13 N -0.733 5.733 14 C 0.248 3.752 15 H 0.108 0.892 16 C -0.105 4.105 17 C -0.117 4.117 18 C -0.213 4.213 19 S 0.093 5.907 20 C -0.193 4.193 21 C -0.074 4.074 22 C -0.091 4.091 23 C -0.106 4.106 24 C -0.035 4.035 25 Cl -0.073 7.073 26 C -0.106 4.106 27 C -0.098 4.098 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.668 -24.582 -1.012 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.382 6.382 13 N -0.387 5.387 14 C 0.140 3.860 15 H 0.126 0.874 16 C -0.119 4.119 17 C -0.148 4.148 18 C -0.348 4.348 19 S 0.357 5.643 20 C -0.329 4.329 21 C -0.076 4.076 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.062 4.062 25 Cl -0.044 7.044 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.177 0.823 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.033 -24.869 -2.490 26.576 hybrid contribution 2.114 1.292 1.430 2.860 sum 11.147 -23.578 -1.060 26.101 Atomic orbital electron populations 1.70015 1.05945 1.27469 1.46832 1.24990 0.95028 0.99027 0.94533 0.86172 0.79423 0.81583 0.78353 1.20273 1.20744 1.19686 1.22860 0.94892 0.91649 1.58980 0.90946 1.85408 1.04732 0.96260 1.96711 1.23530 1.06709 0.95208 1.04929 1.20326 0.86544 0.86133 0.74781 1.90710 1.15217 1.85406 1.46817 1.46138 1.09976 1.04412 1.78223 1.18198 0.96101 0.80299 0.91408 0.87378 1.19070 0.95745 1.01184 0.95868 1.19981 0.98450 1.00212 0.96130 1.25528 1.03507 1.08487 0.97264 1.84230 1.18465 1.50654 1.10996 1.25307 1.04994 1.07469 0.95117 1.19932 0.94068 0.96591 0.96960 1.20983 1.00039 0.94024 0.95892 1.21042 0.90763 1.00202 1.00475 1.20963 0.90362 0.95168 0.99674 1.98378 1.57523 1.65275 1.83246 1.21018 1.00558 0.94182 0.96662 1.20883 0.92032 0.99161 0.99541 0.92174 0.89155 0.89254 0.76757 0.84133 0.81871 0.82280 0.84576 0.84688 0.84737 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.54 9.52 7.80 -10.98 -0.09 9.43 16 12 O -0.51 -11.04 15.52 5.55 0.09 -10.96 16 13 N -0.73 -9.17 4.56 -56.07 -0.26 -9.42 16 14 C 0.25 2.80 2.46 -70.24 -0.17 2.63 16 15 H 0.11 1.36 7.38 -51.93 -0.38 0.98 16 16 C -0.10 -1.22 4.80 -106.25 -0.51 -1.73 16 17 C -0.12 -1.31 9.95 -41.21 -0.41 -1.72 16 18 C -0.21 -2.20 11.23 29.04 0.33 -1.87 16 19 S 0.09 0.97 23.34 -107.50 -2.51 -1.54 16 20 C -0.19 -2.14 10.43 29.04 0.30 -1.83 16 21 C -0.07 -0.68 4.94 -104.62 -0.52 -1.20 16 22 C -0.09 -0.75 9.67 -39.59 -0.38 -1.13 16 23 C -0.11 -0.84 9.83 -39.55 -0.39 -1.23 16 24 C -0.04 -0.29 6.32 -39.50 -0.25 -0.54 16 25 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 26 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 27 C -0.10 -0.79 8.96 -39.59 -0.35 -1.15 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 31 H 0.40 3.86 6.87 -40.82 -0.28 3.57 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.16 1.51 8.03 -52.49 -0.42 1.09 16 35 H 0.14 0.92 8.04 -52.49 -0.42 0.49 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.13 0.85 6.92 -52.49 -0.36 0.49 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -34.16 376.28 -11.37 -45.54 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.95 Total: 2.72 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.41 Total: -17.14 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.48 Total: -34.68 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -4.72 Total: -5.29 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.16 -11.37 -45.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057084632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.222 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds