Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46877 * 269.99618 * 3 2 1 5 5 H 1.48492 * 109.47209 * 29.99757 * 3 2 1 6 6 H 1.48506 * 109.46869 * 149.99947 * 3 2 1 7 7 C 1.38799 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99962 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00463 * 0.02562 * 7 2 1 10 10 C 1.80993 * 100.00219 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47268 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99740 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.46495 * 119.99747 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47584 * 324.99346 * 14 13 11 16 16 C 1.50695 * 109.47342 * 85.00013 * 14 13 11 17 17 C 1.38422 * 122.53779 * 219.73155 * 16 14 13 18 18 C 1.33395 * 114.91909 * 179.75512 * 17 16 14 19 19 S 1.75881 * 109.59143 * 0.48716 * 18 17 16 20 20 C 1.33388 * 122.53957 * 40.02379 * 16 14 13 21 21 C 1.50706 * 109.46786 * 204.99952 * 14 13 11 22 22 C 1.38244 * 119.98773 * 139.99975 * 21 14 13 23 23 C 1.38217 * 120.01084 * 180.02562 * 22 21 14 24 24 C 1.38351 * 119.98541 * 0.25893 * 23 22 21 25 25 Cl 1.73604 * 120.00786 * 179.69323 * 24 23 22 26 26 C 1.38349 * 119.97465 * 359.42086 * 24 23 22 27 27 C 1.38212 * 119.98525 * 0.59771 * 26 24 23 28 28 H 0.96996 * 119.99972 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47367 * 60.00320 * 10 9 7 30 30 H 1.08999 * 109.47161 * 300.00083 * 10 9 7 31 31 H 0.97000 * 119.99443 * 359.97438 * 13 11 10 32 32 H 1.07998 * 122.54406 * 0.02562 * 17 16 14 33 33 H 1.08006 * 125.20457 * 180.20595 * 18 17 16 34 34 H 1.07999 * 125.20488 * 359.97438 * 20 16 14 35 35 H 1.07999 * 119.99331 * 0.02562 * 22 21 14 36 36 H 1.08002 * 120.00169 * 179.97438 * 23 22 21 37 37 H 1.08008 * 120.00633 * 180.29755 * 26 24 23 38 38 H 1.08001 * 119.99190 * 179.72131 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3028 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8441 -6.3432 0.0033 14 6 2.3303 -7.7151 0.0023 15 1 1.4134 -7.7602 0.5902 16 6 2.0407 -8.1421 -1.4136 17 6 0.9287 -8.8939 -1.7518 18 6 0.8188 -9.1823 -3.0496 19 16 2.1818 -8.4956 -3.9238 20 6 2.8394 -7.8290 -2.4350 21 6 3.3590 -8.6372 0.6046 22 6 2.9622 -9.6585 1.4476 23 6 3.9053 -10.5041 2.0007 24 6 5.2470 -10.3249 1.7148 25 17 6.4327 -11.3817 2.4156 26 6 5.6429 -9.3067 0.8659 27 6 4.6989 -8.4615 0.3137 28 1 -0.4850 0.8400 -0.0004 29 1 3.1237 -3.7311 0.8925 30 1 3.1251 -3.7318 -0.8874 31 1 3.8008 -6.1835 0.0043 32 1 0.2028 -9.2186 -1.0212 33 1 0.0179 -9.7541 -3.4947 34 1 3.7503 -7.2538 -2.3594 35 1 1.9151 -9.7957 1.6739 36 1 3.5952 -11.3017 2.6595 37 1 6.6898 -9.1693 0.6386 38 1 5.0082 -7.6638 -0.3454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057084632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = -1.502021 kcal Electronic energy + Delta-G solvation = -24437.226303 eV Core-core repulsion = 20715.599019 eV Total energy + Delta-G solvation = -3721.627284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 367.021 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49691 -40.02699 -38.83672 -37.44183 -35.72627 -34.57256 -32.72852 -32.08575 -30.68344 -30.10974 -27.74618 -27.28730 -24.39497 -23.84961 -22.42181 -21.56781 -19.93204 -19.74238 -18.70271 -18.48324 -17.75219 -17.33940 -16.86866 -16.61736 -16.34484 -16.15759 -15.95593 -15.23067 -14.94431 -14.65739 -14.49721 -14.46986 -14.19115 -14.11379 -13.78670 -13.62644 -13.44577 -13.15190 -13.07994 -12.88661 -12.65592 -12.53072 -12.41741 -12.34616 -11.80035 -11.74468 -11.72236 -11.13376 -11.00532 -10.32811 -10.25786 -10.04018 -9.74933 -9.61103 -9.27521 -8.64567 -8.33735 -6.11011 -0.02671 0.15289 0.29568 0.77760 1.07174 1.14015 1.27093 1.42811 1.46794 1.56511 1.61684 1.75518 2.24289 2.29144 2.61822 3.00558 3.32844 3.59320 3.74496 3.91267 3.92038 4.05681 4.10216 4.22427 4.31960 4.34491 4.47001 4.52099 4.55252 4.64984 4.73379 4.94946 5.06863 5.14210 5.21470 5.24129 5.38834 5.43097 5.46967 5.61274 5.74950 6.20853 6.44298 7.07898 7.22137 8.75333 Molecular weight = 367.02amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.002454 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.806755 B =11408.545705 C =13321.225593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.541 3.459 12 O -0.554 6.554 13 N -0.707 5.707 14 C 0.254 3.746 15 H 0.092 0.908 16 C -0.117 4.117 17 C -0.137 4.137 18 C -0.215 4.215 19 S 0.099 5.901 20 C -0.204 4.204 21 C -0.083 4.083 22 C -0.095 4.095 23 C -0.109 4.109 24 C -0.043 4.043 25 Cl -0.072 7.072 26 C -0.108 4.108 27 C -0.099 4.099 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.414 0.586 32 H 0.149 0.851 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.105 -25.035 -1.167 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.080 5.920 10 C -0.281 4.281 11 C 0.327 3.673 12 O -0.431 6.431 13 N -0.362 5.362 14 C 0.146 3.854 15 H 0.110 0.890 16 C -0.130 4.130 17 C -0.167 4.167 18 C -0.350 4.350 19 S 0.363 5.637 20 C -0.340 4.340 21 C -0.084 4.084 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.070 4.070 25 Cl -0.043 7.043 26 C -0.126 4.126 27 C -0.117 4.117 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.252 0.748 32 H 0.166 0.834 33 H 0.201 0.799 34 H 0.191 0.809 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.526 -25.364 -2.646 27.985 hybrid contribution 1.402 1.259 1.471 2.390 sum 12.928 -24.105 -1.175 27.378 Atomic orbital electron populations 1.70180 1.07942 1.28555 1.48094 1.26108 0.95948 1.03274 0.93830 0.84976 0.78249 0.76153 0.78758 1.19371 1.20400 1.18155 1.23200 0.95339 0.92047 1.58694 0.89923 1.85578 1.10349 0.99078 1.97030 1.23371 1.03669 0.94292 1.06797 1.20007 0.86240 0.86408 0.74691 1.90703 1.17165 1.85877 1.49348 1.45839 1.10247 1.04052 1.76026 1.18161 0.96214 0.79479 0.91536 0.88975 1.19150 0.96206 1.01721 0.95968 1.20203 0.98851 1.00838 0.96855 1.25854 1.03904 1.08151 0.97088 1.84187 1.18407 1.50415 1.10708 1.25550 1.05555 1.07659 0.95245 1.19784 0.93986 0.96791 0.97832 1.21145 1.00820 0.93834 0.95601 1.21220 0.90593 1.00435 1.00509 1.21150 0.90625 0.95384 0.99828 1.98379 1.57464 1.65263 1.83239 1.21219 1.01375 0.93784 0.96251 1.21047 0.91499 0.99592 0.99562 0.92043 0.87192 0.87225 0.74776 0.83380 0.79857 0.80886 0.83585 0.83268 0.83148 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.65 13.22 21.65 0.29 -55.37 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.54 -30.69 9.50 67.95 0.65 -30.04 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 10 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 11 C 0.54 18.90 7.80 87.66 0.68 19.59 16 12 O -0.55 -24.52 15.52 -3.05 -0.05 -24.57 16 13 N -0.71 -16.65 4.56 -449.68 -2.05 -18.70 16 14 C 0.25 5.50 2.46 43.50 0.11 5.60 16 15 H 0.09 2.33 7.38 -2.38 -0.02 2.32 16 16 C -0.12 -2.61 4.80 -20.92 -0.10 -2.71 16 17 C -0.14 -2.99 9.95 21.22 0.21 -2.78 16 18 C -0.21 -4.23 11.23 66.72 0.75 -3.48 16 19 S 0.10 1.95 23.34 -56.49 -1.32 0.63 16 20 C -0.20 -4.24 10.43 66.72 0.70 -3.54 16 21 C -0.08 -1.39 4.94 -19.86 -0.10 -1.49 16 22 C -0.10 -1.46 9.67 22.27 0.22 -1.24 16 23 C -0.11 -1.55 9.83 22.29 0.22 -1.33 16 24 C -0.04 -0.65 6.32 22.32 0.14 -0.50 16 25 Cl -0.07 -1.06 28.96 -2.72 -0.08 -1.13 16 26 C -0.11 -1.46 9.83 22.29 0.22 -1.24 16 27 C -0.10 -1.38 8.96 22.26 0.20 -1.18 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 30 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 31 H 0.41 6.97 6.87 -92.71 -0.64 6.34 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.17 2.92 8.03 -2.91 -0.02 2.90 16 35 H 0.15 1.84 8.04 -2.91 -0.02 1.82 16 36 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 1.48 6.92 -2.91 -0.02 1.46 16 Total: -1.00 -75.30 376.28 2.92 -72.38 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.47 Total: 18.36 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.79 Total: -27.65 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -1.77 Total: -74.07 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -2.48 Total: -8.57 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.13 kcal Total: -75.30 2.92 -72.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057084632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.881 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds