Wall clock time and date at job start Tue Mar 31 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.47335 * 2 1 4 4 O 1.42106 * 110.54189 * 68.37280 * 3 2 1 5 5 O 1.42092 * 110.54332 * 291.62060 * 3 2 1 6 6 N 1.65598 * 104.44747 * 179.97438 * 3 2 1 7 7 C 1.46928 * 120.63259 * 90.00137 * 6 3 2 8 8 C 1.53189 * 108.77746 * 233.63196 * 7 6 3 9 9 C 1.53050 * 109.31010 * 305.36078 * 8 7 6 10 10 C 1.53041 * 109.53716 * 61.36360 * 9 8 7 11 11 H 1.09004 * 109.49660 * 58.62015 * 10 9 8 12 12 C 1.50695 * 109.49545 * 178.68286 * 10 9 8 13 13 O 1.21279 * 119.99992 * 120.00707 * 12 10 9 14 14 N 1.34781 * 120.00314 * 300.00149 * 12 10 9 15 15 C 1.39233 * 120.00103 * 175.70546 * 14 12 10 16 16 C 1.39479 * 119.83539 * 215.29072 * 15 14 12 17 17 C 1.36368 * 120.17119 * 180.02562 * 16 15 14 18 18 C 1.40870 * 119.82947 * 0.02562 * 17 16 15 19 19 C 1.41155 * 120.16662 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00216 * 214.77692 * 19 18 17 21 21 C 1.39902 * 119.99950 * 34.77726 * 19 18 17 22 22 N 1.30874 * 120.00033 * 355.57224 * 21 19 18 23 23 Si 1.86799 * 120.00308 * 175.57581 * 21 19 18 24 24 H 1.48494 * 109.47304 * 179.97438 * 23 21 19 25 25 H 1.48508 * 109.46623 * 299.99975 * 23 21 19 26 26 H 1.48502 * 109.47253 * 59.99411 * 23 21 19 27 27 C 1.40870 * 119.67331 * 0.27478 * 18 17 16 28 28 C 1.36383 * 119.82210 * 359.46722 * 27 18 17 29 29 C 1.46932 * 120.63025 * 270.01927 * 6 3 2 30 30 H 1.09001 * 109.46568 * 60.00203 * 1 2 3 31 31 H 1.09002 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47780 * 300.00548 * 1 2 3 33 33 H 1.08997 * 109.47780 * 239.99452 * 2 1 3 34 34 H 1.09001 * 109.46568 * 119.99797 * 2 1 3 35 35 H 1.08996 * 109.58690 * 113.83720 * 7 6 3 36 36 H 1.09000 * 109.69954 * 353.48458 * 7 6 3 37 37 H 1.08996 * 109.49938 * 185.41238 * 8 7 6 38 38 H 1.08998 * 109.49987 * 65.31144 * 8 7 6 39 39 H 1.09002 * 109.45461 * 301.34470 * 9 8 7 40 40 H 1.08990 * 109.44780 * 181.37969 * 9 8 7 41 41 H 0.96999 * 119.99753 * 355.70914 * 14 12 10 42 42 H 1.08008 * 119.91368 * 359.97438 * 16 15 14 43 43 H 1.08001 * 120.08531 * 179.97438 * 17 16 15 44 44 H 0.97000 * 120.00129 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.08857 * 179.72286 * 27 18 17 46 46 H 1.07999 * 119.91388 * 180.27451 * 28 27 18 47 47 H 1.08992 * 109.58939 * 6.58641 * 29 6 3 48 48 H 1.09000 * 109.58337 * 246.15670 * 29 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3439 1.2370 5 8 1.8387 2.3438 -1.2369 6 7 3.7843 1.5652 0.0007 7 6 4.5306 1.4994 -1.2632 8 6 5.4158 0.2492 -1.2488 9 6 6.2979 0.2681 0.0018 10 6 5.4147 0.2492 1.2515 11 1 4.7868 -0.6417 1.2397 12 6 6.2846 0.2351 2.4819 13 8 6.2034 1.1338 3.2923 14 7 7.1529 -0.7761 2.6820 15 6 8.0194 -0.7446 3.7714 16 6 9.3076 -1.2651 3.6488 17 6 10.1616 -1.2382 4.7115 18 6 9.7397 -0.6834 5.9357 19 6 10.6181 -0.6514 7.0402 20 1 10.2322 -0.7775 8.0410 21 6 11.9887 -0.4562 6.8385 22 7 12.4683 -0.3900 5.6226 23 14 13.1342 -0.2902 8.3046 24 1 14.5259 -0.0931 7.8256 25 1 12.7224 0.8774 9.1248 26 1 13.0649 -1.5234 9.1292 27 6 8.4351 -0.1653 6.0538 28 6 7.5940 -0.1945 4.9805 29 6 4.5295 1.4994 1.2654 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 5.1541 2.3875 -1.3660 36 1 3.8334 1.4438 -2.0991 37 1 6.0457 0.2391 -2.1382 38 1 4.7874 -0.6413 -1.2373 39 1 6.9082 1.1713 0.0020 40 1 6.9461 -0.6081 0.0019 41 1 7.1742 -1.5259 2.0669 42 1 9.6292 -1.6913 2.7099 43 1 11.1587 -1.6420 4.6152 44 1 13.4186 -0.2550 5.4828 45 1 8.1031 0.2575 6.9904 46 1 6.5950 0.2063 5.0681 47 1 3.8299 1.4425 2.0992 48 1 5.1530 2.3874 1.3687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058044852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:28 Heat of formation + Delta-G solvation = -91.007595 kcal Electronic energy + Delta-G solvation = -30860.710914 eV Core-core repulsion = 26621.125192 eV Total energy + Delta-G solvation = -4239.585722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.145 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.25802 -38.38613 -37.46693 -37.08879 -36.23627 -34.51760 -33.58498 -33.26294 -32.55063 -31.53919 -29.60894 -28.84270 -25.49670 -25.10590 -24.30695 -23.87053 -21.79008 -21.13388 -20.56762 -19.50607 -19.11940 -18.21765 -17.36998 -16.83663 -16.74420 -16.69008 -16.18517 -15.27700 -15.21367 -15.08912 -14.73958 -14.50951 -14.24615 -13.99490 -13.82465 -13.65836 -13.54752 -13.17145 -12.94876 -12.87522 -12.67540 -12.38191 -12.29636 -12.22531 -12.12856 -12.01499 -11.77190 -11.73305 -11.41212 -11.37650 -11.27712 -11.15835 -11.05370 -10.95152 -10.74910 -10.72448 -10.03898 -9.52235 -9.45948 -9.37013 -9.09835 -8.88158 -7.57610 -6.89805 -6.64155 -4.36655 -0.10567 2.25008 2.50660 2.99183 3.06472 3.08155 3.10675 3.27664 3.49734 3.61182 3.79705 3.96339 4.10498 4.28392 4.34052 4.51177 4.54850 4.67041 4.70575 4.73908 4.83872 4.97713 5.10654 5.13219 5.19581 5.24515 5.43214 5.45308 5.52924 5.54617 5.63414 5.71321 5.77261 5.90473 6.00000 6.15453 6.20761 6.42279 6.72015 6.88340 7.04405 7.18019 7.27019 7.61046 7.70950 7.83406 8.03565 8.22063 8.28944 8.59109 8.69583 8.90420 8.97245 10.26818 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.001880 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.979920 B =14891.892707 C =15312.818437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.635 4.635 3 S 2.606 3.394 4 O -0.948 6.948 5 O -0.955 6.955 6 N -0.999 5.999 7 C 0.117 3.883 8 C -0.134 4.134 9 C -0.110 4.110 10 C -0.122 4.122 11 H 0.096 0.904 12 C 0.504 3.496 13 O -0.527 6.527 14 N -0.648 5.648 15 C 0.001 3.999 16 C -0.120 4.120 17 C -0.142 4.142 18 C 0.100 3.900 19 C -0.460 4.460 20 H 0.075 0.925 21 C 0.069 3.931 22 N -0.812 5.812 23 Si 0.916 3.084 24 H -0.279 1.279 25 H -0.266 1.266 26 H -0.266 1.266 27 C -0.206 4.206 28 C -0.084 4.084 29 C 0.141 3.859 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.395 0.605 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.278 0.722 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 -3.118 -16.567 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.699 3.301 4 O -0.938 6.938 5 O -0.945 6.945 6 N -0.836 5.836 7 C -0.008 4.008 8 C -0.173 4.173 9 C -0.148 4.148 10 C -0.145 4.145 11 H 0.115 0.885 12 C 0.289 3.711 13 O -0.403 6.403 14 N -0.291 5.291 15 C -0.091 4.091 16 C -0.140 4.140 17 C -0.162 4.162 18 C 0.098 3.902 19 C -0.491 4.491 20 H 0.094 0.906 21 C -0.146 4.146 22 N -0.439 5.439 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.191 1.191 26 H -0.191 1.191 27 C -0.226 4.226 28 C -0.104 4.104 29 C 0.015 3.985 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.228 0.772 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.126 0.874 47 H 0.117 0.883 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.455 -1.603 -16.128 23.096 hybrid contribution 0.915 -1.085 0.241 1.439 sum -15.540 -2.688 -15.887 22.386 Atomic orbital electron populations 1.21506 0.90526 1.05102 1.03466 1.30595 1.07227 1.26928 1.11631 1.05269 0.72909 0.77571 0.74351 1.93628 1.82982 1.72259 1.44956 1.93587 1.83180 1.72469 1.45309 1.57788 1.24147 1.89463 1.12216 1.21487 0.95890 0.98946 0.84477 1.21953 0.98640 0.98133 0.98529 1.21488 0.97328 1.03668 0.92319 1.21688 0.97714 1.00809 0.94330 0.88546 1.20307 0.81512 0.82163 0.87108 1.90719 1.67317 1.36609 1.45701 1.42981 1.36543 1.21840 1.27729 1.17256 0.90675 1.14079 0.87109 1.20301 0.91993 1.03354 0.98335 1.21187 0.99673 1.02142 0.93237 1.17729 0.91080 0.88032 0.93379 1.19472 0.91348 1.43901 0.94385 0.90636 1.25885 0.98901 0.92863 0.96940 1.69751 1.15042 1.37605 1.21474 0.86239 0.78492 0.79778 0.81376 1.20439 1.19070 1.19057 1.20816 0.96545 1.07479 0.97783 1.20398 0.99042 0.99562 0.91432 1.21226 0.95636 0.97749 0.83850 0.91022 0.89978 0.90871 0.85117 0.84949 0.90505 0.89074 0.90066 0.91366 0.90688 0.90841 0.77179 0.89169 0.85068 0.91080 0.88585 0.87448 0.88309 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.92 37.16 0.37 -0.46 16 2 C -0.63 -3.65 6.90 37.16 0.26 -3.39 16 3 S 2.61 24.72 5.41 -107.50 -0.58 24.14 16 4 O -0.95 -12.62 16.72 -57.54 -0.96 -13.58 16 5 O -0.96 -11.23 16.73 -57.54 -0.96 -12.19 16 6 N -1.00 -8.98 3.22 -113.52 -0.37 -9.34 16 7 C 0.12 0.84 6.31 -3.71 -0.02 0.82 16 8 C -0.13 -0.78 6.08 -26.61 -0.16 -0.94 16 9 C -0.11 -0.91 5.08 -26.68 -0.14 -1.05 16 10 C -0.12 -1.25 2.67 -91.65 -0.25 -1.50 16 11 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 12 C 0.50 7.87 6.99 -10.99 -0.08 7.79 16 13 O -0.53 -10.61 13.35 5.56 0.07 -10.53 16 14 N -0.65 -10.37 5.16 -9.74 -0.05 -10.42 16 15 C 0.00 0.02 6.30 -83.57 -0.53 -0.51 16 16 C -0.12 -2.63 9.90 -39.79 -0.39 -3.03 16 17 C -0.14 -3.59 8.61 -39.26 -0.34 -3.92 16 18 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 19 C -0.46 -12.17 9.02 -37.85 -0.34 -12.51 16 20 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 21 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 22 N -0.81 -20.88 10.60 55.55 0.59 -20.29 16 23 Si 0.92 18.88 29.56 -169.99 -5.03 13.85 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.21 -5.16 9.74 -39.25 -0.38 -5.54 16 28 C -0.08 -1.97 8.61 -39.79 -0.34 -2.32 16 29 C 0.14 1.57 4.95 -3.71 -0.02 1.55 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.55 7.11 -51.93 -0.37 0.18 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.55 7.63 -51.93 -0.40 0.16 16 41 H 0.39 4.79 8.35 -40.82 -0.34 4.45 16 42 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 43 H 0.13 3.42 6.14 -52.49 -0.32 3.10 16 44 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 45 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 46 H 0.11 2.47 6.23 -52.49 -0.33 2.14 16 47 H 0.10 1.17 7.10 -51.93 -0.37 0.80 16 48 H 0.09 1.11 7.96 -51.93 -0.41 0.70 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -34.29 398.31 -11.49 -45.78 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.16 Total: 7.89 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -3.05 Total: -21.29 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.17 Total: -40.06 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -1.85 Total: -36.31 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Atomic # 16 Polarization: 24.72 SS G_CDS: -0.58 Total: 24.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.29 -11.49 -45.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058044852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.228 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds