Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36908 * 120.00291 * 2 1 4 4 H 1.07993 * 120.00044 * 117.41198 * 3 2 1 5 5 C 1.39013 * 119.99564 * 297.41493 * 3 2 1 6 6 N 1.31390 * 120.00211 * 27.32855 * 5 3 2 7 7 Si 1.86799 * 119.99641 * 207.32854 * 5 3 2 8 8 H 1.48496 * 109.47202 * 90.00398 * 7 5 3 9 9 H 1.48499 * 109.47104 * 210.00153 * 7 5 3 10 10 H 1.48503 * 109.47441 * 329.99944 * 7 5 3 11 11 C 1.34778 * 119.99667 * 179.97438 * 2 1 3 12 12 O 1.21644 * 119.99671 * 181.55119 * 11 2 1 13 13 C 1.47372 * 120.00252 * 1.56169 * 11 2 1 14 14 C 1.39905 * 120.06605 * 314.44159 * 13 11 2 15 15 C 1.36593 * 119.92437 * 180.25360 * 14 13 11 16 16 C 1.39313 * 120.07322 * 359.45516 * 15 14 13 17 17 S 1.76205 * 119.93067 * 180.27528 * 16 15 14 18 18 C 1.81409 * 102.99733 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46784 * 180.02562 * 18 17 16 20 20 C 1.35101 * 125.68929 * 90.00008 * 19 18 17 21 21 N 1.36840 * 107.18272 * 180.02562 * 20 19 18 22 22 C 1.36483 * 132.57201 * 180.02562 * 21 20 19 23 23 C 1.34949 * 120.60992 * 179.97438 * 22 21 20 24 24 C 1.40467 * 120.30181 * 0.02562 * 23 22 21 25 25 C 1.36026 * 119.69529 * 359.97438 * 24 23 22 26 26 C 1.37087 * 106.99446 * 359.97438 * 21 20 19 27 27 N 1.32559 * 108.03680 * 359.74122 * 26 21 20 28 28 C 1.39326 * 120.13986 * 0.25403 * 16 15 14 29 29 C 1.36594 * 120.06706 * 0.02562 * 28 16 15 30 30 H 1.08998 * 109.47260 * 293.36979 * 1 2 3 31 31 H 1.09005 * 109.46789 * 53.36321 * 1 2 3 32 32 H 1.08994 * 109.47343 * 173.36587 * 1 2 3 33 33 H 0.96996 * 120.00095 * 179.97438 * 6 5 3 34 34 H 1.07999 * 120.03638 * 359.97438 * 14 13 11 35 35 H 1.08006 * 119.96132 * 179.72353 * 15 14 13 36 36 H 1.08998 * 109.47121 * 299.99695 * 18 17 16 37 37 H 1.08992 * 109.47212 * 60.00289 * 18 17 16 38 38 H 1.08000 * 126.41217 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.69199 * 359.94251 * 22 21 20 40 40 H 1.07999 * 119.85050 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.15543 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.33989 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.96214 * 180.02562 * 28 16 15 44 44 H 1.07998 * 120.03208 * 180.02562 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 2.7925 1.4379 0.8302 5 6 2.0171 2.0647 -1.0687 6 7 0.9136 2.0702 -1.7819 7 14 3.4079 3.2380 -1.4909 8 1 4.3261 2.5888 -2.4607 9 1 2.8470 4.4747 -2.0919 10 1 4.1563 3.5835 -0.2556 11 6 2.1388 -1.1673 0.0005 12 8 3.3550 -1.1674 0.0290 13 6 1.4024 -2.4433 -0.0337 14 6 0.2976 -2.6376 0.8025 15 6 -0.3797 -3.8234 0.7721 16 6 0.0215 -4.8345 -0.0983 17 16 -0.8594 -6.3599 -0.1396 18 6 0.0323 -7.3121 -1.4002 19 6 -0.6115 -8.6657 -1.5559 20 6 -1.6115 -8.9691 -2.4121 21 7 -1.9036 -10.2947 -2.2391 22 6 -2.8128 -11.1245 -2.8287 23 6 -2.8961 -12.4215 -2.4655 24 6 -2.0458 -12.9355 -1.4726 25 6 -1.1351 -12.1195 -0.8768 26 6 -1.0595 -10.7676 -1.2679 27 7 -0.2844 -9.7666 -0.8748 28 6 1.1175 -4.6418 -0.9366 29 6 1.8025 -3.4604 -0.9069 30 1 -0.3634 0.4076 0.9433 31 1 -0.3633 0.6133 -0.8247 32 1 -0.3634 -1.0207 -0.1187 33 1 0.8210 2.6838 -2.5274 34 1 -0.0165 -1.8526 1.4744 35 1 -1.2299 -3.9757 1.4205 36 1 -0.0055 -6.7807 -2.3511 37 1 1.0710 -7.4364 -1.0944 38 1 -2.0913 -8.2920 -3.1032 39 1 -3.4720 -10.7393 -3.5926 40 1 -3.6204 -13.0671 -2.9399 41 1 -2.1148 -13.9738 -1.1835 42 1 -0.4759 -12.5038 -0.1126 43 1 1.4258 -5.4274 -1.6106 44 1 2.6518 -3.3115 -1.5573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058158105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = 104.580294 kcal Electronic energy + Delta-G solvation = -27901.284328 eV Core-core repulsion = 23912.062943 eV Total energy + Delta-G solvation = -3989.221386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.23022 -39.49456 -37.98633 -37.43853 -34.55566 -34.12260 -32.44375 -32.01175 -30.85167 -30.60114 -29.63646 -27.83593 -26.20527 -24.98716 -23.77778 -23.15584 -22.82693 -22.35375 -21.04361 -19.51615 -18.26813 -17.58205 -17.23904 -16.97446 -16.51190 -16.21606 -16.09296 -15.48907 -15.14908 -14.83007 -14.68401 -14.61352 -14.34634 -14.16664 -13.72128 -13.56941 -13.54879 -13.02306 -12.88244 -12.80170 -12.51669 -12.24512 -12.23513 -11.85456 -11.61887 -11.49247 -11.38739 -11.21843 -11.01415 -10.76802 -10.49415 -10.43538 -10.29297 -10.28172 -9.37953 -9.12014 -8.78451 -8.65844 -8.50349 -8.29906 -7.31950 -7.22018 -6.34944 -4.15506 0.23326 0.78056 1.23203 1.31445 1.67155 2.13010 2.32021 2.64160 3.12706 3.23880 3.32334 3.36461 3.66204 3.67706 3.90549 4.10945 4.21903 4.31754 4.36639 4.57409 4.67188 4.72654 4.74670 4.95188 5.02359 5.04673 5.11439 5.17289 5.25770 5.37976 5.53836 5.59253 5.66432 5.67781 5.76391 5.95723 5.99206 6.12227 6.24757 6.35419 6.45687 6.56244 6.60229 6.66981 6.83481 7.09233 7.25398 7.45377 7.61133 8.40700 8.60503 9.18279 9.27718 10.01037 10.63002 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.028560 B = 0.001549 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.147985 B =18066.822724 C =18140.288029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.438 5.438 3 C -0.335 4.335 4 H 0.083 0.917 5 C 0.066 3.934 6 N -0.853 5.853 7 Si 0.906 3.094 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.267 1.267 11 C 0.507 3.493 12 O -0.568 6.568 13 C -0.097 4.097 14 C -0.076 4.076 15 C -0.105 4.105 16 C -0.087 4.087 17 S -0.101 6.101 18 C -0.029 4.029 19 C 0.074 3.926 20 C -0.073 4.073 21 N -0.363 5.363 22 C 0.057 3.943 23 C -0.143 4.143 24 C -0.103 4.103 25 C -0.077 4.077 26 C 0.224 3.776 27 N -0.476 5.476 28 C -0.137 4.137 29 C -0.060 4.060 30 H 0.035 0.965 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.270 0.730 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.188 0.812 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.123 0.877 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.775 -28.721 -3.793 31.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.158 5.158 3 C -0.462 4.462 4 H 0.100 0.900 5 C -0.142 4.142 6 N -0.487 5.487 7 Si 0.732 3.268 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.192 1.192 11 C 0.294 3.706 12 O -0.452 6.452 13 C -0.102 4.102 14 C -0.097 4.097 15 C -0.129 4.129 16 C -0.199 4.199 17 S 0.144 5.856 18 C -0.178 4.178 19 C -0.059 4.059 20 C -0.207 4.207 21 N -0.035 5.035 22 C -0.065 4.065 23 C -0.164 4.164 24 C -0.127 4.127 25 C -0.097 4.097 26 C -0.020 4.020 27 N -0.196 5.196 28 C -0.161 4.161 29 C -0.081 4.081 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.205 0.795 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.140 0.860 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.669 -28.975 -2.766 31.745 hybrid contribution 0.889 1.157 -1.730 2.263 sum -11.780 -27.818 -4.496 30.542 Atomic orbital electron populations 1.22430 0.83313 1.00619 1.02392 1.43106 1.04561 1.04099 1.64021 1.18981 1.26690 0.95139 1.05367 0.89977 1.25705 0.95629 0.97871 0.94951 1.69853 1.22940 1.36671 1.19242 0.86300 0.82457 0.78653 0.79372 1.20028 1.21255 1.19163 1.18444 0.87437 0.83468 0.81209 1.90643 1.13426 1.87122 1.53963 1.20513 0.96207 0.96067 0.97461 1.21136 0.93735 0.96590 0.98215 1.20352 1.00952 0.92433 0.99145 1.21841 0.99552 0.97544 1.01003 1.85575 1.40971 1.08408 1.50675 1.21807 1.02389 0.91851 1.01712 1.19805 0.96587 0.93626 0.95883 1.22443 1.05418 0.83682 1.09145 1.42821 1.24720 1.09149 1.26768 1.21659 0.94182 0.90958 0.99709 1.20842 1.01795 0.93948 0.99796 1.21062 0.94974 1.00648 0.96032 1.20323 1.00159 0.88085 1.01110 1.20977 0.92241 0.96043 0.92702 1.70642 1.24894 0.97710 1.26340 1.20753 0.96321 0.98525 1.00477 1.20806 0.98476 0.91584 0.97209 0.94658 0.88838 0.92982 0.92016 0.84690 0.85510 0.87618 0.87446 0.79526 0.81850 0.83107 0.83898 0.83038 0.85964 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.24 9.03 59.85 0.54 1.78 16 2 N -0.44 -11.46 2.89 -123.44 -0.36 -11.81 16 3 C -0.33 -9.49 8.51 -15.00 -0.13 -9.62 16 4 H 0.08 2.39 7.97 -52.49 -0.42 1.97 16 5 C 0.07 1.81 5.46 -17.45 -0.10 1.72 16 6 N -0.85 -23.15 11.48 55.50 0.64 -22.51 16 7 Si 0.91 21.34 29.63 -169.99 -5.04 16.30 16 8 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 C 0.51 12.94 7.20 -12.54 -0.09 12.85 16 12 O -0.57 -16.47 16.96 5.24 0.09 -16.38 16 13 C -0.10 -1.98 5.10 -104.94 -0.54 -2.51 16 14 C -0.08 -1.32 7.24 -39.55 -0.29 -1.61 16 15 C -0.11 -1.59 9.73 -39.78 -0.39 -1.98 16 16 C -0.09 -1.27 6.13 -38.78 -0.24 -1.51 16 17 S -0.10 -1.28 21.90 -107.50 -2.35 -3.64 16 18 C -0.03 -0.31 4.86 36.01 0.17 -0.14 16 19 C 0.07 0.84 6.32 -82.98 -0.52 0.32 16 20 C -0.07 -0.66 11.66 -16.43 -0.19 -0.86 16 21 N -0.36 -3.19 2.95 -62.66 -0.18 -3.37 16 22 C 0.06 0.30 10.95 -16.65 -0.18 0.12 16 23 C -0.14 -0.56 9.98 -39.91 -0.40 -0.96 16 24 C -0.10 -0.48 10.07 -39.54 -0.40 -0.87 16 25 C -0.08 -0.56 10.11 -39.35 -0.40 -0.96 16 26 C 0.22 2.36 7.81 -156.03 -1.22 1.14 16 27 N -0.48 -6.12 11.32 -9.00 -0.10 -6.22 16 28 C -0.14 -2.06 9.30 -39.77 -0.37 -2.43 16 29 C -0.06 -1.09 9.64 -39.55 -0.38 -1.47 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 2.29 6.01 -51.93 -0.31 1.97 16 32 H 0.05 1.01 4.31 -51.93 -0.22 0.79 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.14 2.23 6.68 -52.49 -0.35 1.88 16 35 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.11 0.93 7.74 -51.93 -0.40 0.53 16 37 H 0.11 1.18 7.74 -51.93 -0.40 0.78 16 38 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.16 0.37 8.06 -52.49 -0.42 -0.06 16 40 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 41 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 42 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.48 5.86 -52.49 -0.31 1.18 16 44 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -35.67 386.71 -11.52 -47.19 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.93 Total: 1.61 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -5.11 Total: -7.00 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.01 Total: -43.91 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.09 Total: -16.38 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.04 Total: 16.30 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.35 Total: -3.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.67 -11.52 -47.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058158105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.768 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds