Wall clock time and date at job start Tue Mar 31 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38285 * 119.93121 * 2 1 4 4 C 1.38103 * 120.07883 * 179.97438 * 3 2 1 5 5 C 1.38894 * 119.92503 * 0.02562 * 4 3 2 6 6 N 1.39850 * 120.07540 * 180.02562 * 5 4 3 7 7 C 1.46498 * 120.00268 * 187.87754 * 6 5 4 8 8 C 1.50694 * 109.47191 * 279.04698 * 7 6 5 9 9 H 1.08006 * 120.00062 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00400 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99339 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00520 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46628 * 0.02562 * 12 10 8 14 14 H 1.48492 * 109.46980 * 119.99842 * 12 10 8 15 15 H 1.48494 * 109.47182 * 240.00290 * 12 10 8 16 16 C 1.34778 * 119.99638 * 7.87614 * 6 5 4 17 17 O 1.21596 * 120.00386 * 7.27864 * 16 6 5 18 18 C 1.47572 * 119.99714 * 187.27244 * 16 6 5 19 19 C 1.39733 * 120.03443 * 329.42635 * 18 16 6 20 20 C 1.37806 * 120.05819 * 179.97438 * 19 18 16 21 21 C 1.38820 * 120.02467 * 359.97438 * 20 19 18 22 22 C 1.39677 * 120.19774 * 0.02562 * 21 20 19 23 23 C 1.37970 * 120.01922 * 359.97438 * 22 21 20 24 24 O 1.36038 * 119.44754 * 179.97438 * 22 21 20 25 25 C 1.43004 * 116.66885 * 327.21430 * 24 22 21 26 26 C 1.50748 * 109.57152 * 46.35081 * 25 24 22 27 27 O 1.21292 * 120.11028 * 148.68578 * 26 25 24 28 28 N 1.35025 * 119.80083 * 328.65702 * 26 25 24 29 29 C 1.38896 * 119.85527 * 0.27383 * 5 4 3 30 30 C 1.38108 * 119.92255 * 359.42241 * 29 5 4 31 31 H 1.08996 * 109.47057 * 89.99636 * 1 2 3 32 32 H 1.09002 * 109.47017 * 209.99708 * 1 2 3 33 33 H 1.09007 * 109.46922 * 329.99434 * 1 2 3 34 34 H 1.08005 * 119.95849 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.04247 * 180.02562 * 4 3 2 36 36 H 1.08998 * 109.46912 * 39.04785 * 7 6 5 37 37 H 1.09001 * 109.47144 * 159.04469 * 7 6 5 38 38 H 0.97006 * 119.99579 * 179.97438 * 11 10 8 39 39 H 1.08002 * 119.97135 * 359.97438 * 19 18 16 40 40 H 1.08001 * 119.99250 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.11780 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.44916 * 166.37807 * 25 24 22 43 43 H 1.09001 * 109.45051 * 286.32587 * 25 24 22 44 44 H 0.96999 * 120.46825 * 181.62397 * 28 26 25 45 45 H 1.07998 * 120.03633 * 179.72654 * 29 5 4 46 46 H 1.08000 * 119.96314 * 180.29573 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2020 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6725 -0.0001 0.0016 7 6 6.4051 -1.2567 -0.1723 8 6 6.4618 -1.9912 1.1424 9 1 5.9987 -1.5644 2.0198 10 6 7.1047 -3.2081 1.2251 11 7 7.6690 -3.7276 0.1567 12 14 7.1743 -4.1189 2.8545 13 1 6.4685 -3.3277 3.8943 14 1 6.5177 -5.4429 2.7099 15 1 8.5916 -4.3102 3.2545 16 6 6.3462 1.1561 0.1626 17 8 5.7454 2.1766 0.4385 18 6 7.8132 1.1834 0.0042 19 6 8.5719 0.0533 0.3202 20 6 9.9417 0.0781 0.1720 21 6 10.5695 1.2259 -0.2921 22 6 9.8168 2.3588 -0.6097 23 6 8.4451 2.3395 -0.4632 24 8 10.4479 3.4756 -1.0628 25 6 11.7581 3.7262 -0.5474 26 6 12.5703 2.4571 -0.5942 27 8 13.7706 2.5087 -0.7614 28 7 11.9579 1.2626 -0.4488 29 6 3.5780 -1.2020 -0.0058 30 6 2.1969 -1.1984 0.0001 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5140 34 1 1.6551 2.1327 -0.0004 35 1 4.1163 2.1382 0.0010 36 1 5.8961 -1.8746 -0.9120 37 1 7.4182 -1.0426 -0.5128 38 1 8.1216 -4.5836 0.2150 39 1 8.0843 -0.8403 0.6809 40 1 10.5271 -0.7958 0.4169 41 1 7.8616 3.2148 -0.7079 42 1 12.2454 4.4916 -1.1514 43 1 11.6827 4.0711 0.4838 44 1 12.4740 0.4414 -0.4539 45 1 4.1162 -2.1383 -0.0102 46 1 1.6551 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058173179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:10 Heat of formation + Delta-G solvation = -10.644222 kcal Electronic energy + Delta-G solvation = -32624.786016 eV Core-core repulsion = 28253.241160 eV Total energy + Delta-G solvation = -4371.544856 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52389 -40.46673 -38.88455 -38.14830 -37.18574 -35.73152 -35.13084 -33.09968 -31.67210 -30.62087 -30.35845 -29.84764 -28.16248 -27.64356 -26.05765 -24.04452 -23.45593 -23.21883 -21.89181 -21.19191 -20.11217 -19.63825 -18.47925 -17.90241 -17.31279 -17.04674 -16.66381 -16.30644 -15.76612 -15.35385 -15.18203 -14.85559 -14.76383 -14.54356 -14.48924 -14.16129 -13.85601 -13.77116 -13.42827 -13.29544 -13.08116 -12.99993 -12.90310 -12.59759 -12.51356 -11.91606 -11.89625 -11.62695 -11.48190 -11.31502 -11.15709 -11.06814 -10.79876 -10.61035 -10.36170 -10.26784 -10.17826 -9.94083 -9.23868 -8.96643 -8.82059 -8.55711 -8.35315 -7.88596 -7.15962 -6.47436 -4.59138 0.78747 1.39981 1.79960 1.99624 2.12685 2.62236 3.05626 3.06878 3.16817 3.18698 3.25906 3.58969 3.84267 3.93304 4.11589 4.43622 4.63377 4.73749 4.82546 4.85660 4.97044 5.23525 5.29980 5.35062 5.37584 5.56051 5.62172 5.67865 5.75605 5.79615 5.95909 6.03046 6.10746 6.15504 6.24295 6.28679 6.42437 6.49940 6.59355 6.63558 6.68885 6.86627 6.91612 6.96879 6.98875 7.13781 7.23601 7.26491 7.47133 7.59304 7.65682 7.74714 7.99866 8.49143 8.64040 9.09928 10.55752 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.003289 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.721518 B = 8511.251041 C =11139.396164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.167 4.167 5 C 0.165 3.835 6 N -0.527 5.527 7 C 0.196 3.804 8 C -0.547 4.547 9 H 0.070 0.930 10 C 0.072 3.928 11 N -0.878 5.878 12 Si 0.897 3.103 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.562 3.438 17 O -0.537 6.537 18 C -0.128 4.128 19 C -0.078 4.078 20 C -0.133 4.133 21 C 0.111 3.889 22 C 0.049 3.951 23 C -0.050 4.050 24 O -0.301 6.301 25 C 0.051 3.949 26 C 0.491 3.509 27 O -0.519 6.519 28 N -0.655 5.655 29 C -0.135 4.135 30 C -0.105 4.105 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.170 0.830 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.270 0.730 39 H 0.211 0.789 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.098 0.902 44 H 0.417 0.583 45 H 0.143 0.857 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 7.490 -1.476 7.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.130 4.130 3 C -0.127 4.127 4 C -0.187 4.187 5 C 0.070 3.930 6 N -0.245 5.245 7 C 0.078 3.922 8 C -0.585 4.585 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.514 5.514 12 Si 0.724 3.276 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.205 1.205 16 C 0.354 3.646 17 O -0.418 6.418 18 C -0.132 4.132 19 C -0.096 4.096 20 C -0.154 4.154 21 C 0.015 3.985 22 C 0.003 3.997 23 C -0.070 4.070 24 O -0.216 6.216 25 C -0.028 4.028 26 C 0.278 3.722 27 O -0.395 6.395 28 N -0.301 5.301 29 C -0.155 4.155 30 C -0.124 4.124 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.186 0.814 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.227 0.773 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.116 0.884 44 H 0.256 0.744 45 H 0.160 0.840 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.265 8.185 -1.653 8.355 hybrid contribution 0.575 -1.381 0.946 1.770 sum 0.840 6.805 -0.707 6.893 Atomic orbital electron populations 1.20666 0.92081 1.01930 1.01435 1.19790 0.95446 0.93525 1.04262 1.20852 0.93874 0.96835 1.01111 1.22375 0.94284 0.99677 1.02349 1.17964 0.82388 0.94247 0.98422 1.45782 1.04284 1.09798 1.64595 1.20632 0.94087 0.79080 0.98413 1.21428 1.37023 1.04611 0.95422 0.91185 1.24972 0.94494 0.96679 0.97210 1.69938 1.34312 1.18876 1.28302 0.86419 0.78208 0.79797 0.83189 1.19292 1.20510 1.20516 1.18168 0.86873 0.82793 0.76805 1.90457 1.68477 1.34286 1.48575 1.19598 0.93211 0.94720 1.05640 1.23317 0.92990 1.00057 0.93209 1.20737 0.95389 0.96521 1.02719 1.18317 0.82384 0.95789 1.02039 1.18203 0.91701 0.85256 1.04556 1.20395 0.90902 0.98330 0.97399 1.86265 1.28898 1.41459 1.64986 1.23142 0.81416 0.94821 1.03377 1.21597 0.88643 0.86361 0.75586 1.90797 1.14458 1.86934 1.47278 1.43666 1.06214 1.09848 1.70402 1.21165 0.93951 0.97905 1.02492 1.20749 0.93530 0.97046 1.01054 0.92045 0.92201 0.92270 0.86779 0.81368 0.93782 0.90615 0.91969 0.77315 0.84353 0.83750 0.83904 0.88383 0.74372 0.83959 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.01 36.00 0.36 -0.85 16 2 C -0.13 -1.98 5.88 -104.59 -0.62 -2.60 16 3 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 4 C -0.17 -3.13 8.96 -39.39 -0.35 -3.49 16 5 C 0.17 3.30 6.43 -83.71 -0.54 2.76 16 6 N -0.53 -10.74 2.70 -115.89 -0.31 -11.05 16 7 C 0.20 4.17 4.02 -5.20 -0.02 4.15 16 8 C -0.55 -12.45 6.60 -34.44 -0.23 -12.67 16 9 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 10 C 0.07 1.66 5.36 -17.82 -0.10 1.56 16 11 N -0.88 -20.88 13.29 55.43 0.74 -20.15 16 12 Si 0.90 18.49 29.54 -169.99 -5.02 13.47 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 15 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 16 C 0.56 11.12 7.34 -12.45 -0.09 11.02 16 17 O -0.54 -11.07 13.26 5.28 0.07 -11.00 16 18 C -0.13 -2.25 5.59 -104.95 -0.59 -2.83 16 19 C -0.08 -1.36 7.47 -39.18 -0.29 -1.65 16 20 C -0.13 -1.98 9.92 -39.52 -0.39 -2.37 16 21 C 0.11 1.54 6.55 -83.49 -0.55 0.99 16 22 C 0.05 0.70 6.43 -39.14 -0.25 0.45 16 23 C -0.05 -0.78 9.54 -39.09 -0.37 -1.16 16 24 O -0.30 -3.87 10.45 -19.86 -0.21 -4.08 16 25 C 0.05 0.51 7.17 36.03 0.26 0.77 16 26 C 0.49 6.15 7.93 -10.85 -0.09 6.07 16 27 O -0.52 -7.80 17.95 5.55 0.10 -7.70 16 28 N -0.65 -8.02 5.45 -9.65 -0.05 -8.08 16 29 C -0.13 -2.56 8.95 -39.39 -0.35 -2.91 16 30 C -0.11 -1.72 9.69 -39.61 -0.38 -2.11 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.17 3.28 4.76 -54.92 -0.26 3.02 16 36 H 0.04 1.00 7.10 -51.93 -0.37 0.63 16 37 H 0.08 1.60 3.94 -52.55 -0.21 1.39 16 38 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 39 H 0.21 4.17 3.15 -52.49 -0.17 4.00 16 40 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.14 2.12 7.93 -52.49 -0.42 1.70 16 42 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.42 4.42 8.88 -40.82 -0.36 4.06 16 45 H 0.14 2.86 6.05 -52.49 -0.32 2.54 16 46 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -26.99 380.19 -8.95 -35.94 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -4.97 Total: -6.99 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.37 Total: -39.28 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.78 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -26.99 -8.95 -35.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058173179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.297 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds