Wall clock time and date at job start Tue Mar 31 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00399 * 2 1 4 4 H 1.48496 * 109.47424 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47032 * 300.00654 * 3 2 1 6 6 H 1.48501 * 109.46426 * 60.00288 * 3 2 1 7 7 C 1.38954 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99811 * 172.80644 * 7 2 1 9 9 N 1.37092 * 120.00275 * 352.80964 * 7 2 1 10 10 C 1.46501 * 119.99733 * 318.40520 * 9 7 2 11 11 C 1.50701 * 109.47494 * 269.99874 * 10 9 7 12 12 C 1.38236 * 120.00076 * 269.73144 * 11 10 9 13 13 C 1.38238 * 119.99862 * 179.75973 * 12 11 10 14 14 C 1.38235 * 119.99760 * 0.50832 * 13 12 11 15 15 C 1.38238 * 120.00126 * 359.74246 * 14 13 12 16 16 C 1.38227 * 120.00018 * 0.02562 * 15 14 13 17 17 C 1.34774 * 120.00548 * 138.40658 * 9 7 2 18 18 O 1.21293 * 120.00575 * 184.55457 * 17 9 7 19 19 C 1.50701 * 119.99624 * 4.55340 * 17 9 7 20 20 C 1.53004 * 109.46892 * 174.92799 * 19 17 9 21 21 C 1.50701 * 109.46892 * 180.02562 * 20 19 17 22 22 N 1.27939 * 124.23764 * 89.97718 * 21 20 19 23 23 C 1.34667 * 117.84376 * 180.02562 * 22 21 20 24 24 C 1.40969 * 129.68696 * 179.97438 * 23 22 21 25 25 C 1.36176 * 120.42267 * 180.02562 * 24 23 22 26 26 C 1.38794 * 120.77833 * 359.97438 * 25 24 23 27 27 C 1.37647 * 120.06739 * 359.97438 * 26 25 24 28 28 C 1.39329 * 119.95652 * 359.97438 * 27 26 25 29 29 S 1.70650 * 124.23951 * 269.99827 * 21 20 19 30 30 H 0.96999 * 120.00089 * 5.00081 * 1 2 3 31 31 H 1.09001 * 109.47207 * 29.99999 * 10 9 7 32 32 H 1.09005 * 109.47145 * 149.99901 * 10 9 7 33 33 H 1.07999 * 120.00003 * 359.97438 * 12 11 10 34 34 H 1.07997 * 119.99802 * 180.22709 * 13 12 11 35 35 H 1.07998 * 119.99758 * 179.72201 * 14 13 12 36 36 H 1.07999 * 119.99908 * 179.97438 * 15 14 13 37 37 H 1.08004 * 120.00272 * 179.97438 * 16 15 14 38 38 H 1.08999 * 109.47373 * 54.92621 * 19 17 9 39 39 H 1.08994 * 109.47284 * 294.92416 * 19 17 9 40 40 H 1.08999 * 109.47381 * 60.00293 * 20 19 17 41 41 H 1.09000 * 109.46863 * 299.99455 * 20 19 17 42 42 H 1.07993 * 119.78763 * 359.97438 * 24 23 22 43 43 H 1.08003 * 119.61270 * 179.72090 * 25 24 23 44 44 H 1.08007 * 119.96414 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.02042 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0087 -1.2034 -0.0005 8 1 3.0824 -1.2070 -0.1177 9 7 1.3314 -2.3861 0.1475 10 6 0.2423 -2.4893 1.1219 11 6 0.7976 -2.9322 2.4511 12 6 0.8779 -4.2789 2.7525 13 6 1.3919 -4.6852 3.9698 14 6 1.8158 -3.7445 4.8897 15 6 1.7306 -2.3976 4.5903 16 6 1.2211 -1.9915 3.3712 17 6 1.6673 -3.4537 -0.6032 18 8 1.0159 -4.4744 -0.5321 19 6 2.8525 -3.3794 -1.5311 20 6 3.0906 -4.7515 -2.1650 21 6 4.2762 -4.6773 -3.0924 22 7 5.4844 -4.8996 -2.7354 23 6 6.4463 -4.7967 -3.6723 24 6 7.8387 -4.9844 -3.5574 25 6 8.6472 -4.8294 -4.6421 26 6 8.1187 -4.4851 -5.8784 27 6 6.7626 -4.2965 -6.0204 28 6 5.9198 -4.4519 -4.9219 29 16 4.1753 -4.2857 -4.7503 30 1 -0.4850 0.8368 -0.0732 31 1 -0.2379 -1.5173 1.2345 32 1 -0.4896 -3.2179 0.7730 33 1 0.5423 -5.0136 2.0357 34 1 1.4580 -5.7375 4.2038 35 1 2.2131 -4.0618 5.8424 36 1 2.0615 -1.6627 5.3092 37 1 1.1542 -0.9392 3.1374 38 1 3.7367 -3.0809 -0.9680 39 1 2.6558 -2.6469 -2.3138 40 1 2.2065 -5.0500 -2.7282 41 1 3.2875 -5.4841 -1.3823 42 1 8.2670 -5.2521 -2.6028 43 1 9.7127 -4.9720 -4.5382 44 1 8.7722 -4.3651 -6.7300 45 1 6.3522 -4.0282 -6.9827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058200996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:56 Heat of formation + Delta-G solvation = 43.951303 kcal Electronic energy + Delta-G solvation = -29018.463851 eV Core-core repulsion = 25092.039306 eV Total energy + Delta-G solvation = -3926.424545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.38834 -39.11475 -38.08126 -37.12585 -34.97706 -33.02382 -31.85783 -31.24949 -30.77503 -30.25264 -29.26098 -26.39815 -25.43205 -24.30239 -23.41961 -22.31424 -21.88714 -20.80817 -20.31803 -19.12776 -18.54681 -17.05479 -16.72051 -16.36148 -15.80195 -15.51377 -15.19322 -14.92113 -14.82028 -14.51119 -14.42247 -14.25356 -14.14433 -13.96475 -13.29636 -12.93381 -12.78690 -12.64805 -12.46125 -12.19243 -12.12241 -12.00087 -11.83470 -11.43161 -11.30505 -11.25381 -10.95701 -10.93341 -10.75494 -10.58809 -10.39540 -10.32954 -10.19242 -10.14263 -9.54999 -9.23452 -8.73767 -8.55744 -8.30406 -8.19359 -8.04743 -7.53950 -6.39692 -4.21930 0.38052 1.01221 1.25067 1.75795 1.97002 2.02620 2.31601 3.05523 3.16794 3.19870 3.59122 3.82460 3.87855 4.04894 4.36443 4.50363 4.71252 4.82883 4.92479 5.01859 5.16715 5.18050 5.39256 5.44866 5.50517 5.55965 5.58866 5.61290 5.73946 5.90367 5.97264 6.02213 6.13838 6.16025 6.20393 6.20807 6.31754 6.40052 6.52612 6.56846 6.57721 6.65303 6.81195 7.06186 7.09854 7.20813 7.41615 7.54040 7.66071 7.67657 7.92903 8.31537 8.99597 9.40851 9.84670 10.59714 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.002682 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.713248 B =10435.806886 C =11599.252775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.330 4.330 8 H 0.087 0.913 9 N -0.433 5.433 10 C 0.136 3.864 11 C -0.076 4.076 12 C -0.107 4.107 13 C -0.132 4.132 14 C -0.136 4.136 15 C -0.133 4.133 16 C -0.096 4.096 17 C 0.482 3.518 18 O -0.602 6.602 19 C -0.112 4.112 20 C -0.035 4.035 21 C 0.117 3.883 22 N -0.473 5.473 23 C 0.089 3.911 24 C -0.067 4.067 25 C -0.109 4.109 26 C -0.112 4.112 27 C -0.069 4.069 28 C -0.192 4.192 29 S 0.101 5.899 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.564 -5.553 -5.942 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.159 4.159 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.458 4.458 8 H 0.105 0.895 9 N -0.150 5.150 10 C 0.013 3.987 11 C -0.078 4.078 12 C -0.126 4.126 13 C -0.151 4.151 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.115 4.115 17 C 0.270 3.730 18 O -0.488 6.488 19 C -0.153 4.153 20 C -0.076 4.076 21 C -0.167 4.167 22 N -0.186 5.186 23 C -0.032 4.032 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.133 4.133 27 C -0.091 4.091 28 C -0.311 4.311 29 S 0.359 5.641 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.280 -5.768 -5.913 12.424 hybrid contribution 1.486 0.902 0.208 1.751 sum 10.766 -4.866 -5.705 13.119 Atomic orbital electron populations 1.69609 1.06015 1.27862 1.47175 1.25420 0.95339 0.99626 0.95521 0.86048 0.79925 0.81805 0.78130 1.19201 1.20498 1.20426 1.19508 0.92038 0.82782 1.51513 0.89504 1.43313 1.31388 1.09633 1.30696 1.20672 0.89928 1.04621 0.83466 1.20680 0.97430 0.92834 0.96833 1.21277 0.98908 0.96125 0.96267 1.21044 1.00590 0.98763 0.94661 1.20960 1.01870 0.93433 0.99141 1.21056 1.01135 0.95615 0.97261 1.21132 0.97507 0.99879 0.92933 1.20230 0.86471 0.84487 0.81778 1.90519 1.55744 1.32195 1.70318 1.21322 0.98910 0.95420 0.99647 1.20250 0.90781 0.99929 0.96645 1.27030 0.96142 0.97122 0.96436 1.66263 0.99260 1.18721 1.34375 1.19281 0.94739 1.01952 0.87244 1.20399 0.89381 0.99245 0.99787 1.20693 1.00027 0.99896 0.92418 1.21082 0.94313 1.00035 0.97892 1.20330 0.92718 0.99610 0.96490 1.23961 0.97667 1.10073 0.99367 1.84063 1.01100 1.69889 1.09088 0.91805 0.85464 0.91886 0.85921 0.87047 0.87183 0.86989 0.86101 0.89626 0.89182 0.88631 0.88172 0.84915 0.84999 0.85002 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.72 10.92 55.50 0.61 -21.11 16 2 C 0.05 1.10 5.25 -17.47 -0.09 1.01 16 3 Si 0.91 18.88 29.56 -169.99 -5.03 13.86 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.33 -7.98 8.64 -14.93 -0.13 -8.11 16 8 H 0.09 2.06 7.01 -52.48 -0.37 1.70 16 9 N -0.43 -10.39 2.50 -116.09 -0.29 -10.68 16 10 C 0.14 3.17 5.15 -5.19 -0.03 3.15 16 11 C -0.08 -1.62 5.46 -104.62 -0.57 -2.19 16 12 C -0.11 -2.11 9.70 -39.58 -0.38 -2.50 16 13 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 14 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 15 C -0.13 -2.26 10.05 -39.59 -0.40 -2.65 16 16 C -0.10 -1.89 9.70 -39.59 -0.38 -2.27 16 17 C 0.48 11.07 7.62 -10.99 -0.08 10.99 16 18 O -0.60 -14.65 15.31 5.55 0.08 -14.57 16 19 C -0.11 -2.15 4.43 -27.88 -0.12 -2.27 16 20 C -0.03 -0.59 5.08 -27.88 -0.14 -0.73 16 21 C 0.12 1.88 6.54 -13.90 -0.09 1.79 16 22 N -0.47 -7.97 10.57 -9.08 -0.10 -8.07 16 23 C 0.09 1.33 7.00 -84.96 -0.59 0.73 16 24 C -0.07 -0.81 10.05 -39.29 -0.39 -1.20 16 25 C -0.11 -1.01 9.94 -40.12 -0.40 -1.41 16 26 C -0.11 -0.99 10.04 -39.59 -0.40 -1.39 16 27 C -0.07 -0.74 10.07 -39.39 -0.40 -1.13 16 28 C -0.19 -2.61 6.56 -38.55 -0.25 -2.87 16 29 S 0.10 1.39 23.11 -107.50 -2.48 -1.09 16 30 H 0.27 6.43 8.32 -40.82 -0.34 6.09 16 31 H 0.13 3.15 5.20 -51.93 -0.27 2.88 16 32 H 0.06 1.52 7.31 -51.93 -0.38 1.14 16 33 H 0.12 2.49 7.83 -52.49 -0.41 2.08 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 38 H 0.09 1.67 7.57 -51.93 -0.39 1.28 16 39 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.10 1.55 8.04 -51.93 -0.42 1.13 16 41 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -28.65 396.68 -12.48 -41.13 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.60 Total: 10.87 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -5.65 Total: -16.32 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.22 Total: -39.86 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.57 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.48 Total: -1.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.65 -12.48 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058200996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.081 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds