Wall clock time and date at job start Tue Mar 31 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36708 * 126.68360 * 2 1 4 4 C 1.46846 * 125.76054 * 359.97438 * 3 2 1 5 5 O 1.21671 * 119.99593 * 6.91846 * 4 3 2 6 6 N 1.34773 * 119.99919 * 186.92286 * 4 3 2 7 7 C 1.46499 * 120.00304 * 6.03833 * 6 4 3 8 8 C 1.50701 * 109.46988 * 272.96424 * 7 6 4 9 9 H 1.08004 * 120.00356 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99802 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99656 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00297 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47230 * 89.99788 * 12 10 8 14 14 H 1.48499 * 109.47249 * 209.99954 * 12 10 8 15 15 H 1.48498 * 109.46968 * 330.00102 * 12 10 8 16 16 C 1.46503 * 119.99808 * 186.04395 * 6 4 3 17 17 C 1.50704 * 109.46805 * 269.99810 * 16 6 4 18 18 C 1.38666 * 120.41966 * 89.99995 * 17 16 6 19 19 C 1.38637 * 118.41912 * 179.97438 * 18 17 16 20 20 C 1.38225 * 119.16168 * 0.25408 * 19 18 17 21 21 N 1.31859 * 120.76283 * 359.49476 * 20 19 18 22 22 C 1.31887 * 121.72285 * 0.49440 * 21 20 19 23 23 N 1.38202 * 108.48234 * 179.71288 * 3 2 1 24 24 H 0.96997 * 125.34033 * 180.19552 * 23 3 2 25 25 C 1.33310 * 109.30711 * 0.19198 * 23 3 2 26 26 C 1.39498 * 107.91021 * 0.13584 * 25 23 3 27 27 C 1.47100 * 121.63140 * 179.81759 * 26 25 23 28 28 O 1.21313 * 122.44626 * 168.58720 * 27 26 25 29 29 C 1.52147 * 115.11200 * 348.61116 * 27 26 25 30 30 C 1.53184 * 108.42079 * 42.71892 * 29 27 26 31 31 C 1.50760 * 129.22381 * 180.28579 * 25 23 3 32 32 H 1.09000 * 109.46731 * 90.02894 * 1 2 3 33 33 H 1.09000 * 109.46685 * 210.02336 * 1 2 3 34 34 H 1.08992 * 109.47412 * 330.02671 * 1 2 3 35 35 H 1.08994 * 109.46999 * 32.96632 * 7 6 4 36 36 H 1.09001 * 109.47093 * 152.96488 * 7 6 4 37 37 H 0.97003 * 119.99556 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.47431 * 149.99818 * 16 6 4 39 39 H 1.09001 * 109.47077 * 29.99151 * 16 6 4 40 40 H 1.08002 * 120.79527 * 359.95140 * 18 17 16 41 41 H 1.08005 * 120.41746 * 179.97438 * 19 18 17 42 42 H 1.07999 * 119.62031 * 179.74868 * 20 19 18 43 43 H 1.08005 * 119.61510 * 179.75168 * 22 21 20 44 44 H 1.09002 * 109.67675 * 162.45408 * 29 27 26 45 45 H 1.09000 * 109.67447 * 282.94883 * 29 27 26 46 46 H 1.09004 * 109.23085 * 55.33775 * 30 29 27 47 47 H 1.08999 * 109.23794 * 174.75361 * 30 29 27 48 48 H 1.09010 * 109.51114 * 279.35219 * 31 25 23 49 49 H 1.08994 * 109.50792 * 39.48388 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3237 1.0963 0.0000 4 6 1.8808 2.4964 -0.0005 5 8 0.6999 2.7608 0.1259 6 7 2.7823 3.4883 -0.1412 7 6 4.1837 3.1697 -0.4256 8 6 4.9193 2.9396 0.8694 9 1 4.3952 3.0219 1.8102 10 6 6.2611 2.6228 0.8532 11 7 6.9029 2.4215 1.9833 12 14 7.1673 2.4796 -0.7739 13 1 7.7295 3.8029 -1.1455 14 1 8.2694 1.4931 -0.6416 15 1 6.2235 2.0291 -1.8282 16 6 2.3609 4.8852 -0.0095 17 6 1.9447 5.4135 -1.3581 18 6 0.6286 5.3017 -1.7804 19 6 0.2913 5.8024 -3.0284 20 6 1.2721 6.3875 -3.8070 21 7 2.5130 6.4809 -3.3709 22 6 2.8696 6.0161 -2.1893 23 7 3.6366 0.6647 0.0066 24 1 4.4167 1.2411 0.0107 25 6 3.6623 -0.6682 0.0064 26 6 2.3435 -1.1227 -0.0035 27 6 2.0223 -2.5582 -0.0102 28 8 0.8996 -2.9749 0.1839 29 6 3.2010 -3.4824 -0.2777 30 6 4.4049 -2.9753 0.5222 31 6 4.8484 -1.5988 0.0181 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3634 0.8901 0.5134 35 1 4.2345 2.2691 -1.0374 36 1 4.6433 3.9998 -0.9620 37 1 7.8470 2.1990 1.9719 38 1 3.1897 5.4802 0.3738 39 1 1.5193 4.9473 0.6805 40 1 -0.1159 4.8353 -1.1522 41 1 -0.7242 5.7320 -3.3896 42 1 1.0184 6.7763 -4.7821 43 1 3.8967 6.1071 -1.8678 44 1 2.9516 -4.4957 0.0372 45 1 3.4377 -3.4766 -1.3416 46 1 4.1313 -2.9014 1.5747 47 1 5.2300 -3.6793 0.4144 48 1 5.2481 -1.6919 -0.9918 49 1 5.6176 -1.1998 0.6793 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:00 Heat of formation + Delta-G solvation = 11.457854 kcal Electronic energy + Delta-G solvation = -34170.460280 eV Core-core repulsion = 29870.281026 eV Total energy + Delta-G solvation = -4300.179254 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54373 -40.14177 -38.98090 -38.09865 -35.82847 -35.30258 -33.52219 -32.47912 -32.15389 -31.51659 -29.24468 -28.67694 -28.38906 -26.84465 -25.54741 -23.58568 -23.31046 -22.71306 -22.01178 -21.65261 -19.84943 -18.75576 -18.07910 -17.56101 -17.06723 -16.77214 -16.25404 -15.89396 -15.77018 -15.43368 -15.03253 -14.77294 -14.46406 -14.40430 -14.14018 -13.96360 -13.66610 -13.61602 -13.52568 -13.12368 -13.06633 -12.83680 -12.74525 -12.47382 -12.29647 -12.07824 -12.00771 -11.86711 -11.71556 -11.51309 -11.37035 -11.28376 -11.04177 -10.97315 -10.80283 -10.65345 -10.12210 -9.74426 -9.49846 -9.39253 -9.25274 -9.17131 -8.89083 -8.41853 -8.15666 -7.58606 -6.71074 -4.79757 1.15905 1.40612 1.76262 2.01568 2.80932 2.88939 2.94774 3.39735 3.47243 3.65028 3.78930 3.90682 4.03796 4.45255 4.52406 4.56230 4.80942 4.89572 4.92190 4.98715 4.99570 5.09699 5.18008 5.23950 5.31949 5.48075 5.51584 5.56511 5.62664 5.68896 5.75713 5.79987 5.88053 5.90202 5.96801 5.98992 6.09512 6.17735 6.18580 6.19384 6.25026 6.26062 6.46030 6.56247 6.75403 6.79512 6.84181 6.92793 7.13080 7.30499 7.72015 7.93005 7.97640 8.04375 8.06709 8.40834 8.65888 8.81395 10.38645 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.004229 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.315111 B = 6618.905478 C = 8930.221713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.021 4.021 3 C -0.064 4.064 4 C 0.597 3.403 5 O -0.549 6.549 6 N -0.590 5.590 7 C 0.192 3.808 8 C -0.567 4.567 9 H 0.091 0.909 10 C 0.081 3.919 11 N -0.860 5.860 12 Si 0.849 3.151 13 H -0.260 1.260 14 H -0.271 1.271 15 H -0.261 1.261 16 C 0.164 3.836 17 C -0.149 4.149 18 C -0.051 4.051 19 C -0.179 4.179 20 C 0.091 3.909 21 N -0.490 5.490 22 C 0.109 3.891 23 N -0.482 5.482 24 H 0.442 0.558 25 C 0.098 3.902 26 C -0.289 4.289 27 C 0.431 3.569 28 O -0.475 6.475 29 C -0.162 4.162 30 C -0.104 4.104 31 C -0.063 4.063 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.029 0.971 36 H 0.042 0.958 37 H 0.275 0.725 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 -2.387 -7.008 8.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C -0.176 4.176 4 C 0.387 3.613 5 O -0.428 6.428 6 N -0.319 5.319 7 C 0.070 3.930 8 C -0.606 4.606 9 H 0.109 0.891 10 C -0.127 4.127 11 N -0.494 5.494 12 Si 0.673 3.327 13 H -0.184 1.184 14 H -0.196 1.196 15 H -0.186 1.186 16 C 0.041 3.959 17 C -0.152 4.152 18 C -0.077 4.077 19 C -0.199 4.199 20 C -0.066 4.066 21 N -0.199 5.199 22 C -0.048 4.048 23 N -0.090 5.090 24 H 0.302 0.698 25 C -0.033 4.033 26 C -0.297 4.297 27 C 0.311 3.689 28 O -0.352 6.352 29 C -0.200 4.200 30 C -0.142 4.142 31 C -0.101 4.101 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.159 0.841 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.933 -1.863 -7.256 8.461 hybrid contribution 0.757 -0.072 -0.262 0.804 sum -3.176 -1.935 -7.518 8.387 Atomic orbital electron populations 1.20385 0.89181 1.03322 1.01904 1.19298 0.95562 0.89634 0.98301 1.19869 0.83294 0.93564 1.20836 1.17031 0.85091 0.83230 0.75903 1.90675 1.16214 1.83457 1.52498 1.47739 1.09585 1.04688 1.69919 1.20137 0.78570 0.97046 0.97295 1.21543 0.94926 1.50682 0.93424 0.89107 1.25005 0.96944 0.94239 0.96538 1.69868 1.10626 1.43141 1.25754 0.87251 0.81247 0.80366 0.83872 1.18405 1.19591 1.18583 1.20191 1.01560 0.82074 0.92104 1.21415 0.94619 0.99840 0.99308 1.21719 0.96340 0.94198 0.95482 1.22145 1.01044 1.00942 0.95770 1.22713 0.88576 0.95974 0.99364 1.67693 1.19433 1.17584 1.15162 1.22752 0.99653 0.93255 0.89172 1.43810 1.10150 1.06522 1.48482 0.69750 1.21298 0.96125 0.84908 1.00921 1.19924 0.92138 0.94663 1.22933 1.21876 0.88381 0.88011 0.70634 1.90474 1.24910 1.80562 1.39269 1.22330 0.95392 0.99802 1.02500 1.21421 0.97191 0.95158 1.00453 1.20341 0.93859 0.92832 1.03086 0.92035 0.91262 0.89891 0.95313 0.94007 0.91414 0.88728 0.89173 0.84057 0.85066 0.83191 0.82811 0.89355 0.88531 0.90868 0.90083 0.89490 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.69 36.01 0.35 -1.27 16 2 C -0.02 -0.41 6.19 -104.51 -0.65 -1.06 16 3 C -0.06 -1.30 6.57 -82.06 -0.54 -1.84 16 4 C 0.60 12.18 7.61 -12.78 -0.10 12.09 16 5 O -0.55 -11.32 13.58 5.21 0.07 -11.25 16 6 N -0.59 -11.26 2.44 -177.92 -0.43 -11.70 16 7 C 0.19 3.85 3.77 -5.19 -0.02 3.83 16 8 C -0.57 -13.00 7.78 -34.44 -0.27 -13.27 16 9 H 0.09 2.40 8.06 -52.48 -0.42 1.97 16 10 C 0.08 1.88 5.14 -17.82 -0.09 1.79 16 11 N -0.86 -21.62 13.96 55.43 0.77 -20.85 16 12 Si 0.85 16.87 27.09 -169.99 -4.61 12.26 16 13 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.26 -4.96 6.54 56.52 0.37 -4.59 16 16 C 0.16 2.67 5.50 -5.19 -0.03 2.64 16 17 C -0.15 -2.26 5.48 -104.48 -0.57 -2.83 16 18 C -0.05 -0.73 9.71 -39.28 -0.38 -1.11 16 19 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 20 C 0.09 1.16 11.18 -17.54 -0.20 0.97 16 21 N -0.49 -7.42 10.36 -13.25 -0.14 -7.55 16 22 C 0.11 1.65 10.86 -17.55 -0.19 1.46 16 23 N -0.48 -9.51 4.68 -5.30 -0.02 -9.53 16 24 H 0.44 9.03 2.74 -40.82 -0.11 8.92 16 25 C 0.10 1.70 7.19 -81.45 -0.59 1.12 16 26 C -0.29 -5.22 6.08 -105.17 -0.64 -5.86 16 27 C 0.43 7.02 7.09 -30.00 -0.21 6.80 16 28 O -0.47 -8.89 16.77 5.53 0.09 -8.80 16 29 C -0.16 -1.87 6.15 -27.07 -0.17 -2.04 16 30 C -0.10 -1.13 5.80 -26.56 -0.15 -1.29 16 31 C -0.06 -0.84 6.24 -27.78 -0.17 -1.01 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.22 7.12 -51.93 -0.37 0.85 16 34 H 0.08 1.52 6.31 -51.93 -0.33 1.19 16 35 H 0.03 0.60 4.43 -51.93 -0.23 0.37 16 36 H 0.04 0.80 7.48 -51.93 -0.39 0.41 16 37 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 38 H 0.09 1.44 8.02 -51.93 -0.42 1.03 16 39 H 0.09 1.45 7.47 -51.93 -0.39 1.06 16 40 H 0.14 2.05 7.44 -52.49 -0.39 1.66 16 41 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 42 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 43 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 49 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -28.72 396.32 -9.75 -38.47 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -6.44 Total: 16.50 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -5.01 Total: -3.51 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.18 Total: -49.64 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.16 Total: -20.05 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -4.61 Total: 12.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.72 -9.75 -38.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.925 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds