Wall clock time and date at job start Tue Mar 31 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36708 * 126.68360 * 2 1 4 4 C 1.46846 * 125.76054 * 359.97438 * 3 2 1 5 5 O 1.21671 * 119.99593 * 6.91846 * 4 3 2 6 6 N 1.34773 * 119.99919 * 186.92286 * 4 3 2 7 7 C 1.46499 * 120.00304 * 6.03833 * 6 4 3 8 8 C 1.50701 * 109.46988 * 272.96424 * 7 6 4 9 9 H 1.08004 * 120.00356 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99802 * 179.97438 * 8 7 6 11 11 N 1.31521 * 119.99656 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00297 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47230 * 89.99788 * 12 10 8 14 14 H 1.48499 * 109.47249 * 209.99954 * 12 10 8 15 15 H 1.48498 * 109.46968 * 330.00102 * 12 10 8 16 16 C 1.46503 * 119.99808 * 186.04395 * 6 4 3 17 17 C 1.50704 * 109.46805 * 269.99810 * 16 6 4 18 18 C 1.38666 * 120.41966 * 89.99995 * 17 16 6 19 19 C 1.38637 * 118.41912 * 179.97438 * 18 17 16 20 20 C 1.38225 * 119.16168 * 0.25408 * 19 18 17 21 21 N 1.31859 * 120.76283 * 359.49476 * 20 19 18 22 22 C 1.31887 * 121.72285 * 0.49440 * 21 20 19 23 23 N 1.38202 * 108.48234 * 179.71288 * 3 2 1 24 24 H 0.96997 * 125.34033 * 180.19552 * 23 3 2 25 25 C 1.33310 * 109.30711 * 0.19198 * 23 3 2 26 26 C 1.39498 * 107.91021 * 0.13584 * 25 23 3 27 27 C 1.47100 * 121.63140 * 179.81759 * 26 25 23 28 28 O 1.21313 * 122.44626 * 168.58720 * 27 26 25 29 29 C 1.52147 * 115.11200 * 348.61116 * 27 26 25 30 30 C 1.53184 * 108.42079 * 42.71892 * 29 27 26 31 31 C 1.50760 * 129.22381 * 180.28579 * 25 23 3 32 32 H 1.09000 * 109.46731 * 90.02894 * 1 2 3 33 33 H 1.09000 * 109.46685 * 210.02336 * 1 2 3 34 34 H 1.08992 * 109.47412 * 330.02671 * 1 2 3 35 35 H 1.08994 * 109.46999 * 32.96632 * 7 6 4 36 36 H 1.09001 * 109.47093 * 152.96488 * 7 6 4 37 37 H 0.97003 * 119.99556 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.47431 * 149.99818 * 16 6 4 39 39 H 1.09001 * 109.47077 * 29.99151 * 16 6 4 40 40 H 1.08002 * 120.79527 * 359.95140 * 18 17 16 41 41 H 1.08005 * 120.41746 * 179.97438 * 19 18 17 42 42 H 1.07999 * 119.62031 * 179.74868 * 20 19 18 43 43 H 1.08005 * 119.61510 * 179.75168 * 22 21 20 44 44 H 1.09002 * 109.67675 * 162.45408 * 29 27 26 45 45 H 1.09000 * 109.67447 * 282.94883 * 29 27 26 46 46 H 1.09004 * 109.23085 * 55.33775 * 30 29 27 47 47 H 1.08999 * 109.23794 * 174.75361 * 30 29 27 48 48 H 1.09010 * 109.51114 * 279.35219 * 31 25 23 49 49 H 1.08994 * 109.50792 * 39.48388 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3237 1.0963 0.0000 4 6 1.8808 2.4964 -0.0005 5 8 0.6999 2.7608 0.1259 6 7 2.7823 3.4883 -0.1412 7 6 4.1837 3.1697 -0.4256 8 6 4.9193 2.9396 0.8694 9 1 4.3952 3.0219 1.8102 10 6 6.2611 2.6228 0.8532 11 7 6.9029 2.4215 1.9833 12 14 7.1673 2.4796 -0.7739 13 1 7.7295 3.8029 -1.1455 14 1 8.2694 1.4931 -0.6416 15 1 6.2235 2.0291 -1.8282 16 6 2.3609 4.8852 -0.0095 17 6 1.9447 5.4135 -1.3581 18 6 0.6286 5.3017 -1.7804 19 6 0.2913 5.8024 -3.0284 20 6 1.2721 6.3875 -3.8070 21 7 2.5130 6.4809 -3.3709 22 6 2.8696 6.0161 -2.1893 23 7 3.6366 0.6647 0.0066 24 1 4.4167 1.2411 0.0107 25 6 3.6623 -0.6682 0.0064 26 6 2.3435 -1.1227 -0.0035 27 6 2.0223 -2.5582 -0.0102 28 8 0.8996 -2.9749 0.1839 29 6 3.2010 -3.4824 -0.2777 30 6 4.4049 -2.9753 0.5222 31 6 4.8484 -1.5988 0.0181 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3634 0.8901 0.5134 35 1 4.2345 2.2691 -1.0374 36 1 4.6433 3.9998 -0.9620 37 1 7.8470 2.1990 1.9719 38 1 3.1897 5.4802 0.3738 39 1 1.5193 4.9473 0.6805 40 1 -0.1159 4.8353 -1.1522 41 1 -0.7242 5.7320 -3.3896 42 1 1.0184 6.7763 -4.7821 43 1 3.8967 6.1071 -1.8678 44 1 2.9516 -4.4957 0.0372 45 1 3.4377 -3.4766 -1.3416 46 1 4.1313 -2.9014 1.5747 47 1 5.2300 -3.6793 0.4144 48 1 5.2481 -1.6919 -0.9918 49 1 5.6176 -1.1998 0.6793 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058201486.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:59 Heat of formation + Delta-G solvation = -3.467065 kcal Electronic energy + Delta-G solvation = -34171.107473 eV Core-core repulsion = 29870.281026 eV Total energy + Delta-G solvation = -4300.826447 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.96920 -41.31120 -40.34109 -39.47695 -37.38651 -36.39343 -35.10146 -33.92344 -33.50391 -32.67336 -30.57372 -30.17537 -29.65693 -28.17249 -26.93602 -25.01979 -24.48796 -24.11335 -23.16723 -22.86795 -21.18560 -20.23994 -19.38474 -19.33047 -18.39950 -18.00914 -17.50826 -17.20029 -17.07658 -16.81772 -16.40270 -16.16029 -15.81464 -15.66305 -15.45621 -15.18834 -14.90430 -14.86069 -14.76924 -14.64088 -14.34900 -14.21053 -13.94148 -13.85132 -13.62983 -13.46361 -13.38220 -13.26088 -13.02900 -12.93540 -12.73259 -12.54385 -12.38918 -12.16521 -11.98082 -11.90150 -11.84243 -11.11706 -11.01261 -10.74668 -10.51738 -10.46007 -10.03558 -9.89554 -9.67203 -9.02750 -8.51275 -6.65297 0.07135 0.30080 0.45935 0.49736 1.25010 1.31599 1.36312 1.97996 2.09548 2.12318 2.25840 2.40234 2.79208 2.89847 3.29318 3.49599 3.64045 3.68910 3.80630 3.88096 3.93450 3.99824 4.06163 4.06579 4.07098 4.25600 4.28635 4.42545 4.46378 4.51322 4.55508 4.64103 4.66214 4.71249 4.74307 4.78672 4.82801 4.84296 5.03597 5.07991 5.10609 5.13845 5.18368 5.28801 5.32522 5.38489 5.43015 5.69665 5.73889 5.85382 5.96826 6.35659 6.46139 6.53442 6.75958 6.96377 6.97053 7.12558 8.62552 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.004229 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.315111 B = 6618.905478 C = 8930.221713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.038 4.038 3 C -0.096 4.096 4 C 0.588 3.412 5 O -0.561 6.561 6 N -0.591 5.591 7 C 0.201 3.799 8 C -0.562 4.562 9 H 0.042 0.958 10 C 0.043 3.957 11 N -0.906 5.906 12 Si 0.904 3.096 13 H -0.257 1.257 14 H -0.261 1.261 15 H -0.245 1.245 16 C 0.164 3.836 17 C -0.158 4.158 18 C -0.063 4.063 19 C -0.170 4.170 20 C 0.092 3.908 21 N -0.508 5.508 22 C 0.099 3.901 23 N -0.498 5.498 24 H 0.439 0.561 25 C 0.107 3.893 26 C -0.307 4.307 27 C 0.426 3.574 28 O -0.507 6.507 29 C -0.150 4.150 30 C -0.098 4.098 31 C -0.068 4.068 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.279 0.721 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.164 0.836 42 H 0.186 0.814 43 H 0.159 0.841 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.060 0.940 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -3.708 -9.823 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C -0.206 4.206 4 C 0.379 3.621 5 O -0.442 6.442 6 N -0.320 5.320 7 C 0.078 3.922 8 C -0.601 4.601 9 H 0.061 0.939 10 C -0.161 4.161 11 N -0.542 5.542 12 Si 0.725 3.275 13 H -0.181 1.181 14 H -0.185 1.185 15 H -0.168 1.168 16 C 0.041 3.959 17 C -0.161 4.161 18 C -0.089 4.089 19 C -0.190 4.190 20 C -0.065 4.065 21 N -0.217 5.217 22 C -0.058 4.058 23 N -0.105 5.105 24 H 0.297 0.703 25 C -0.024 4.024 26 C -0.314 4.314 27 C 0.308 3.692 28 O -0.386 6.386 29 C -0.188 4.188 30 C -0.136 4.136 31 C -0.106 4.106 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.181 0.819 42 H 0.203 0.797 43 H 0.176 0.824 44 H 0.127 0.873 45 H 0.140 0.860 46 H 0.079 0.921 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.955 -3.172 -10.070 10.963 hybrid contribution 0.350 0.364 0.668 0.838 sum -2.604 -2.808 -9.401 10.152 Atomic orbital electron populations 1.20294 0.88627 1.02639 1.02281 1.19673 0.96315 0.90361 0.98121 1.20015 0.84044 0.93805 1.22784 1.17224 0.85223 0.83717 0.75969 1.90645 1.16530 1.83755 1.53265 1.47781 1.09044 1.05602 1.69553 1.19981 0.78835 0.97543 0.95813 1.21412 0.95145 1.50800 0.92710 0.93934 1.25651 0.97369 0.93423 0.99703 1.69990 1.11201 1.44720 1.28243 0.86352 0.80404 0.80717 0.79997 1.18092 1.18532 1.16831 1.20261 1.01530 0.80843 0.93248 1.21235 0.95308 1.00890 0.98690 1.21799 0.95869 0.94719 0.96556 1.22471 1.02612 0.99378 0.94517 1.23329 0.87738 0.94928 1.00546 1.67736 1.20808 1.18117 1.15048 1.22818 0.99888 0.93598 0.89450 1.43769 1.09565 1.07522 1.49602 0.70279 1.22117 0.97592 0.84380 0.98275 1.20336 0.92276 0.95711 1.23097 1.22543 0.89410 0.87852 0.69364 1.90459 1.26621 1.80792 1.40747 1.22348 0.92927 0.99280 1.04204 1.21470 0.98228 0.94505 0.99404 1.20662 0.91993 0.92929 1.04984 0.91098 0.91336 0.90948 0.95076 0.92602 0.91112 0.88277 0.89683 0.84810 0.81878 0.79715 0.82422 0.87271 0.85956 0.92104 0.85864 0.86397 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.01 9.69 71.24 0.69 -2.32 16 2 C -0.04 -1.51 6.19 -19.79 -0.12 -1.63 16 3 C -0.10 -4.04 6.57 40.03 0.26 -3.78 16 4 C 0.59 25.02 7.61 86.50 0.66 25.68 16 5 O -0.56 -24.23 13.58 -4.26 -0.06 -24.29 16 6 N -0.59 -23.37 2.44 -835.05 -2.04 -25.41 16 7 C 0.20 8.16 3.77 85.63 0.32 8.48 16 8 C -0.56 -26.64 7.78 25.60 0.20 -26.44 16 9 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 10 C 0.04 2.03 5.14 84.65 0.44 2.46 16 11 N -0.91 -46.56 13.96 21.45 0.30 -46.26 16 12 Si 0.90 33.74 27.09 68.60 1.86 35.60 16 13 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 14 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 15 H -0.24 -8.42 6.54 99.48 0.65 -7.77 16 16 C 0.16 5.55 5.50 85.63 0.47 6.02 16 17 C -0.16 -4.84 5.48 -19.77 -0.11 -4.95 16 18 C -0.06 -1.78 9.71 22.47 0.22 -1.57 16 19 C -0.17 -3.86 10.11 22.36 0.23 -3.64 16 20 C 0.09 2.11 11.18 84.69 0.95 3.06 16 21 N -0.51 -14.58 10.36 -195.83 -2.03 -16.61 16 22 C 0.10 2.95 10.86 84.67 0.92 3.87 16 23 N -0.50 -19.86 4.68 -170.68 -0.80 -20.66 16 24 H 0.44 18.08 2.74 -92.71 -0.25 17.82 16 25 C 0.11 3.62 7.19 42.66 0.31 3.93 16 26 C -0.31 -11.01 6.08 -20.22 -0.12 -11.14 16 27 C 0.43 13.33 7.09 28.48 0.20 13.53 16 28 O -0.51 -18.75 16.77 -3.13 -0.05 -18.80 16 29 C -0.15 -2.91 6.15 30.37 0.19 -2.73 16 30 C -0.10 -1.77 5.80 30.71 0.18 -1.59 16 31 C -0.07 -1.60 6.24 29.92 0.19 -1.42 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 2.49 7.12 -2.39 -0.02 2.47 16 34 H 0.07 2.79 6.31 -2.39 -0.02 2.77 16 35 H 0.03 1.29 4.43 -2.39 -0.01 1.28 16 36 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 37 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 38 H 0.10 3.18 8.02 -2.39 -0.02 3.16 16 39 H 0.08 2.91 7.47 -2.39 -0.02 2.89 16 40 H 0.13 3.96 7.44 -2.91 -0.02 3.94 16 41 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 44 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 49 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -65.96 396.32 3.93 -62.03 By element: Atomic # 1 Polarization: 47.88 SS G_CDS: 0.69 Total: 48.57 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.06 Total: 5.84 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -4.57 Total: -108.95 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.11 Total: -43.09 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 1.86 Total: 35.60 kcal Total: -65.96 3.93 -62.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201486.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.566 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds