Wall clock time and date at job start Tue Mar 31 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47257 * 113.35300 * 3 2 1 5 5 C 1.37100 * 120.00104 * 268.13229 * 4 3 2 6 6 H 1.08002 * 119.99853 * 198.57378 * 5 4 3 7 7 C 1.38947 * 119.99859 * 18.56487 * 5 4 3 8 8 N 1.31408 * 120.00144 * 9.52527 * 7 5 4 9 9 Si 1.86798 * 120.00000 * 189.52134 * 7 5 4 10 10 H 1.48497 * 109.47241 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46932 * 120.00161 * 9 7 5 12 12 H 1.48496 * 109.47335 * 240.00099 * 9 7 5 13 13 C 1.34780 * 120.00165 * 88.12211 * 4 3 2 14 14 O 1.21293 * 119.99824 * 174.73823 * 13 4 3 15 15 C 1.50695 * 119.99774 * 354.75073 * 13 4 3 16 16 C 1.53042 * 109.45977 * 138.03128 * 15 13 4 17 17 C 1.53199 * 109.31266 * 181.38020 * 16 15 13 18 18 N 1.46926 * 108.77513 * 305.36859 * 17 16 15 19 19 C 1.34777 * 120.62467 * 233.58270 * 18 17 16 20 20 O 1.21693 * 120.00563 * 4.74468 * 19 18 17 21 21 C 1.46431 * 119.99681 * 184.74053 * 19 18 17 22 22 C 1.34806 * 119.99887 * 175.71948 * 21 19 18 23 23 C 1.47214 * 120.00013 * 180.02562 * 22 21 19 24 24 C 1.39837 * 120.16996 * 179.97438 * 23 22 21 25 25 C 1.37886 * 119.82587 * 179.97438 * 24 23 22 26 26 C 1.38413 * 120.17265 * 0.02562 * 25 24 23 27 27 C 1.38405 * 120.33844 * 0.02562 * 26 25 24 28 28 C 1.37888 * 120.17716 * 359.97438 * 27 26 25 29 29 C 1.46924 * 118.74081 * 53.85817 * 18 17 16 30 30 C 1.53040 * 109.45891 * 258.09441 * 15 13 4 31 31 H 1.08993 * 109.47495 * 353.35351 * 3 2 1 32 32 H 1.08997 * 109.47207 * 233.34898 * 3 2 1 33 33 H 0.97000 * 120.00584 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46637 * 18.05433 * 15 13 4 35 35 H 1.09004 * 109.49838 * 61.43210 * 16 15 13 36 36 H 1.09000 * 109.49827 * 301.33103 * 16 15 13 37 37 H 1.08998 * 109.58514 * 185.57389 * 17 16 15 38 38 H 1.09004 * 109.69751 * 65.22406 * 17 16 15 39 39 H 1.08004 * 119.99924 * 355.72525 * 21 19 18 40 40 H 1.07998 * 120.00360 * 0.02562 * 22 21 19 41 41 H 1.07999 * 120.08586 * 0.25772 * 24 23 22 42 42 H 1.07993 * 119.91700 * 179.97438 * 25 24 23 43 43 H 1.07992 * 119.82792 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.90892 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.08662 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.58621 * 65.92645 * 29 18 17 47 47 H 1.09001 * 109.58276 * 186.35488 * 29 18 17 48 48 H 1.08997 * 109.50356 * 298.57035 * 30 15 13 49 49 H 1.09004 * 109.49467 * 58.66540 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5484 -1.2680 5 6 3.3615 -0.2899 -2.3200 6 1 3.9888 0.0454 -3.1327 7 6 2.8236 -1.5708 -2.3403 8 7 1.9156 -1.9164 -1.4554 9 14 3.3909 -2.8018 -3.6257 10 1 4.4132 -2.1705 -4.4984 11 1 3.9802 -3.9861 -2.9507 12 1 2.2310 -3.2276 -4.4493 13 6 3.2841 1.8764 -1.4007 14 8 3.7777 2.3206 -2.4157 15 6 2.8814 2.8092 -0.2877 16 6 3.9621 3.8766 -0.1009 17 6 3.5658 4.8022 1.0538 18 7 2.2248 5.3410 0.7890 19 6 2.0035 6.6704 0.8054 20 8 2.9338 7.4404 0.9553 21 6 0.6434 7.1882 0.6429 22 6 0.4094 8.5118 0.7454 23 6 -0.9579 9.0323 0.5825 24 6 -1.2048 10.4046 0.6887 25 6 -2.4882 10.8845 0.5344 26 6 -3.5308 10.0118 0.2755 27 6 -3.2946 8.6521 0.1700 28 6 -2.0167 8.1568 0.3219 29 6 1.1285 4.4029 0.5119 30 6 1.5533 3.4822 -0.6421 31 1 2.9718 -1.0198 0.1189 32 1 2.9711 0.6143 0.8245 33 1 1.5398 -2.8105 -1.4698 34 1 2.7662 2.2433 0.6367 35 1 4.0603 4.4592 -1.0169 36 1 4.9129 3.3954 0.1285 37 1 4.2809 5.6214 1.1272 38 1 3.5561 4.2407 1.9880 39 1 -0.1722 6.5096 0.4409 40 1 1.2250 9.1904 0.9471 41 1 -0.3916 11.0873 0.8866 42 1 -2.6806 11.9440 0.6165 43 1 -4.5339 10.3936 0.1560 44 1 -4.1134 7.9773 -0.0317 45 1 -1.8341 7.0956 0.2397 46 1 0.9235 3.8075 1.4016 47 1 0.2350 4.9588 0.2278 48 1 1.6741 4.0685 -1.5530 49 1 0.7896 2.7202 -0.7980 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:40 Heat of formation + Delta-G solvation = 18.204309 kcal Electronic energy + Delta-G solvation = -32202.174305 eV Core-core repulsion = 27902.287599 eV Total energy + Delta-G solvation = -4299.886706 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.38152 -39.50972 -39.01393 -36.96017 -35.78806 -34.37660 -34.33425 -32.83226 -31.74836 -31.36578 -31.14859 -29.73524 -27.58711 -26.46616 -24.89655 -24.08222 -23.14057 -22.86828 -21.67316 -20.46175 -19.06960 -18.50203 -18.02092 -17.80525 -16.84921 -16.58653 -16.29935 -16.08765 -15.51768 -15.20273 -14.92716 -14.79354 -14.34220 -14.15872 -14.00564 -13.76011 -13.68498 -13.58501 -13.31817 -13.21222 -13.07231 -13.00910 -12.78412 -12.31288 -12.07567 -11.93027 -11.65532 -11.58258 -11.56384 -11.27391 -11.25055 -11.17406 -11.11917 -10.77127 -10.62896 -10.53725 -10.42613 -10.37219 -10.14251 -9.84024 -9.32386 -9.31373 -8.83173 -8.58453 -8.40175 -8.10580 -6.51396 -4.08931 0.26632 1.05116 1.75621 2.96767 3.05437 3.17555 3.18952 3.24469 3.51980 3.59527 3.72581 3.99711 4.10872 4.24608 4.41847 4.59272 4.62658 4.63197 4.77283 4.81489 4.87983 4.96434 5.03627 5.07091 5.13772 5.16841 5.23960 5.29293 5.39061 5.45310 5.56236 5.57871 5.63501 5.71668 5.79843 5.83201 5.88852 5.93262 6.02695 6.08616 6.14105 6.14381 6.20264 6.34758 6.34935 6.53872 6.57651 6.59465 6.62379 7.37554 7.41002 7.85506 8.14084 8.23815 8.76535 8.95706 9.14568 9.67838 10.52065 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002013 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.357839 B =13904.178210 C =14897.165504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.255 3.745 3 C 0.221 3.779 4 N -0.446 5.446 5 C -0.304 4.304 6 H 0.108 0.892 7 C 0.028 3.972 8 N -0.891 5.891 9 Si 0.933 3.067 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.464 3.536 14 O -0.571 6.571 15 C -0.105 4.105 16 C -0.115 4.115 17 C 0.112 3.888 18 N -0.603 5.603 19 C 0.549 3.451 20 O -0.550 6.550 21 C -0.207 4.207 22 C -0.027 4.027 23 C -0.072 4.072 24 C -0.097 4.097 25 C -0.124 4.124 26 C -0.112 4.112 27 C -0.121 4.121 28 C -0.102 4.102 29 C 0.108 3.892 30 C -0.119 4.119 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.273 0.727 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 17.082 9.223 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.063 4.063 3 C 0.094 3.906 4 N -0.167 5.167 5 C -0.432 4.432 6 H 0.126 0.874 7 C -0.173 4.173 8 N -0.532 5.532 9 Si 0.760 3.240 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.252 3.748 14 O -0.453 6.453 15 C -0.127 4.127 16 C -0.153 4.153 17 C -0.010 4.010 18 N -0.335 5.335 19 C 0.340 3.660 20 O -0.431 6.431 21 C -0.227 4.227 22 C -0.046 4.046 23 C -0.072 4.072 24 C -0.115 4.115 25 C -0.142 4.142 26 C -0.130 4.130 27 C -0.139 4.139 28 C -0.120 4.120 29 C -0.014 4.014 30 C -0.158 4.158 31 H 0.151 0.849 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.069 17.475 8.802 20.805 hybrid contribution 0.306 -1.161 -0.690 1.385 sum -6.762 16.314 8.113 19.435 Atomic orbital electron populations 1.80883 1.13552 1.11933 1.09850 1.29203 0.95275 0.90334 0.91500 1.18873 0.81807 1.03089 0.86833 1.43666 1.57140 1.04750 1.11099 1.19824 1.28811 0.93521 1.01000 0.87430 1.25303 0.95052 0.98667 0.98318 1.69653 1.26231 1.21140 1.36157 0.85730 0.78601 0.79647 0.80004 1.19176 1.20507 1.20839 1.20037 0.83804 0.82321 0.88608 1.90547 1.47398 1.75751 1.31607 1.21280 0.96080 0.96439 0.98926 1.21762 0.98037 0.96376 0.99166 1.21688 0.83587 0.97980 0.97741 1.48007 1.10647 1.05440 1.69442 1.18257 0.89167 0.81899 0.76671 1.90782 1.44973 1.56457 1.50853 1.23102 0.96558 0.96726 1.06354 1.22360 0.94720 0.95534 0.92014 1.19077 0.92854 0.93675 1.01642 1.21392 0.97272 0.94327 0.98540 1.21119 0.92773 0.99943 1.00329 1.21328 0.99235 0.93569 0.98900 1.21146 0.96917 0.95673 1.00155 1.21480 0.92418 0.99828 0.98263 1.21964 0.89263 0.91582 0.98635 1.21851 0.96725 0.98798 0.98390 0.84942 0.90254 0.91596 0.89819 0.90339 0.90368 0.88807 0.91300 0.84975 0.84637 0.85447 0.85734 0.85907 0.85607 0.85421 0.90803 0.89545 0.90630 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.70 18.54 42.15 0.78 -9.92 16 2 C 0.25 5.29 13.09 -20.76 -0.27 5.01 16 3 C 0.22 4.17 4.81 -6.83 -0.03 4.14 16 4 N -0.45 -9.93 2.59 -117.94 -0.31 -10.23 16 5 C -0.30 -7.60 9.40 -14.93 -0.14 -7.74 16 6 H 0.11 2.86 7.30 -52.49 -0.38 2.48 16 7 C 0.03 0.68 5.16 -17.47 -0.09 0.59 16 8 N -0.89 -21.60 8.69 55.50 0.48 -21.12 16 9 Si 0.93 19.54 29.56 -169.99 -5.03 14.52 16 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.46 9.90 6.51 -10.99 -0.07 9.83 16 14 O -0.57 -14.39 16.11 5.55 0.09 -14.30 16 15 C -0.11 -1.68 2.06 -91.73 -0.19 -1.87 16 16 C -0.11 -1.67 5.08 -26.61 -0.14 -1.80 16 17 C 0.11 1.41 6.44 -3.71 -0.02 1.39 16 18 N -0.60 -7.78 2.97 -174.14 -0.52 -8.30 16 19 C 0.55 7.59 7.62 -12.96 -0.10 7.49 16 20 O -0.55 -9.22 15.65 5.20 0.08 -9.14 16 21 C -0.21 -2.28 8.73 -37.50 -0.33 -2.60 16 22 C -0.03 -0.27 9.46 -37.15 -0.35 -0.62 16 23 C -0.07 -0.67 5.87 -105.05 -0.62 -1.29 16 24 C -0.10 -0.79 9.80 -39.11 -0.38 -1.17 16 25 C -0.12 -0.88 10.03 -39.65 -0.40 -1.28 16 26 C -0.11 -0.79 10.04 -39.46 -0.40 -1.19 16 27 C -0.12 -0.93 10.03 -39.65 -0.40 -1.33 16 28 C -0.10 -0.89 9.41 -39.11 -0.37 -1.25 16 29 C 0.11 1.26 6.35 -3.49 -0.02 1.24 16 30 C -0.12 -1.79 5.36 -26.39 -0.14 -1.93 16 31 H 0.13 2.62 6.41 -51.93 -0.33 2.29 16 32 H 0.08 1.14 6.03 -51.93 -0.31 0.83 16 33 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 34 H 0.08 1.17 5.53 -51.93 -0.29 0.88 16 35 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.25 6.99 -51.93 -0.36 0.88 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.13 1.19 3.91 -52.48 -0.21 0.98 16 40 H 0.14 1.42 7.52 -52.49 -0.39 1.02 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.13 0.96 6.17 -52.49 -0.32 0.64 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.84 5.36 -51.93 -0.28 0.56 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 49 H 0.08 1.31 7.95 -51.93 -0.41 0.89 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -32.25 404.87 -8.99 -41.24 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.22 Total: 5.53 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -4.45 Total: 5.62 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.44 Total: -49.57 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.25 -8.99 -41.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.445 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds