Wall clock time and date at job start Tue Mar 31 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47257 * 113.35300 * 3 2 1 5 5 C 1.37100 * 120.00104 * 268.13229 * 4 3 2 6 6 H 1.08002 * 119.99853 * 198.57378 * 5 4 3 7 7 C 1.38947 * 119.99859 * 18.56487 * 5 4 3 8 8 N 1.31408 * 120.00144 * 9.52527 * 7 5 4 9 9 Si 1.86798 * 120.00000 * 189.52134 * 7 5 4 10 10 H 1.48497 * 109.47241 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46932 * 120.00161 * 9 7 5 12 12 H 1.48496 * 109.47335 * 240.00099 * 9 7 5 13 13 C 1.34780 * 120.00165 * 88.12211 * 4 3 2 14 14 O 1.21293 * 119.99824 * 174.73823 * 13 4 3 15 15 C 1.50695 * 119.99774 * 354.75073 * 13 4 3 16 16 C 1.53042 * 109.45977 * 138.03128 * 15 13 4 17 17 C 1.53199 * 109.31266 * 181.38020 * 16 15 13 18 18 N 1.46926 * 108.77513 * 305.36859 * 17 16 15 19 19 C 1.34777 * 120.62467 * 233.58270 * 18 17 16 20 20 O 1.21693 * 120.00563 * 4.74468 * 19 18 17 21 21 C 1.46431 * 119.99681 * 184.74053 * 19 18 17 22 22 C 1.34806 * 119.99887 * 175.71948 * 21 19 18 23 23 C 1.47214 * 120.00013 * 180.02562 * 22 21 19 24 24 C 1.39837 * 120.16996 * 179.97438 * 23 22 21 25 25 C 1.37886 * 119.82587 * 179.97438 * 24 23 22 26 26 C 1.38413 * 120.17265 * 0.02562 * 25 24 23 27 27 C 1.38405 * 120.33844 * 0.02562 * 26 25 24 28 28 C 1.37888 * 120.17716 * 359.97438 * 27 26 25 29 29 C 1.46924 * 118.74081 * 53.85817 * 18 17 16 30 30 C 1.53040 * 109.45891 * 258.09441 * 15 13 4 31 31 H 1.08993 * 109.47495 * 353.35351 * 3 2 1 32 32 H 1.08997 * 109.47207 * 233.34898 * 3 2 1 33 33 H 0.97000 * 120.00584 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46637 * 18.05433 * 15 13 4 35 35 H 1.09004 * 109.49838 * 61.43210 * 16 15 13 36 36 H 1.09000 * 109.49827 * 301.33103 * 16 15 13 37 37 H 1.08998 * 109.58514 * 185.57389 * 17 16 15 38 38 H 1.09004 * 109.69751 * 65.22406 * 17 16 15 39 39 H 1.08004 * 119.99924 * 355.72525 * 21 19 18 40 40 H 1.07998 * 120.00360 * 0.02562 * 22 21 19 41 41 H 1.07999 * 120.08586 * 0.25772 * 24 23 22 42 42 H 1.07993 * 119.91700 * 179.97438 * 25 24 23 43 43 H 1.07992 * 119.82792 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.90892 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.08662 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.58621 * 65.92645 * 29 18 17 47 47 H 1.09001 * 109.58276 * 186.35488 * 29 18 17 48 48 H 1.08997 * 109.50356 * 298.57035 * 30 15 13 49 49 H 1.09004 * 109.49467 * 58.66540 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5484 -1.2680 5 6 3.3615 -0.2899 -2.3200 6 1 3.9888 0.0454 -3.1327 7 6 2.8236 -1.5708 -2.3403 8 7 1.9156 -1.9164 -1.4554 9 14 3.3909 -2.8018 -3.6257 10 1 4.4132 -2.1705 -4.4984 11 1 3.9802 -3.9861 -2.9507 12 1 2.2310 -3.2276 -4.4493 13 6 3.2841 1.8764 -1.4007 14 8 3.7777 2.3206 -2.4157 15 6 2.8814 2.8092 -0.2877 16 6 3.9621 3.8766 -0.1009 17 6 3.5658 4.8022 1.0538 18 7 2.2248 5.3410 0.7890 19 6 2.0035 6.6704 0.8054 20 8 2.9338 7.4404 0.9553 21 6 0.6434 7.1882 0.6429 22 6 0.4094 8.5118 0.7454 23 6 -0.9579 9.0323 0.5825 24 6 -1.2048 10.4046 0.6887 25 6 -2.4882 10.8845 0.5344 26 6 -3.5308 10.0118 0.2755 27 6 -3.2946 8.6521 0.1700 28 6 -2.0167 8.1568 0.3219 29 6 1.1285 4.4029 0.5119 30 6 1.5533 3.4822 -0.6421 31 1 2.9718 -1.0198 0.1189 32 1 2.9711 0.6143 0.8245 33 1 1.5398 -2.8105 -1.4698 34 1 2.7662 2.2433 0.6367 35 1 4.0603 4.4592 -1.0169 36 1 4.9129 3.3954 0.1285 37 1 4.2809 5.6214 1.1272 38 1 3.5561 4.2407 1.9880 39 1 -0.1722 6.5096 0.4409 40 1 1.2250 9.1904 0.9471 41 1 -0.3916 11.0873 0.8866 42 1 -2.6806 11.9440 0.6165 43 1 -4.5339 10.3936 0.1560 44 1 -4.1134 7.9773 -0.0317 45 1 -1.8341 7.0956 0.2397 46 1 0.9235 3.8075 1.4016 47 1 0.2350 4.9588 0.2278 48 1 1.6741 4.0685 -1.5530 49 1 0.7896 2.7202 -0.7980 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058201600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:39 Heat of formation + Delta-G solvation = 1.501726 kcal Electronic energy + Delta-G solvation = -32202.898583 eV Core-core repulsion = 27902.287599 eV Total energy + Delta-G solvation = -4300.610984 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.54653 -40.63641 -39.97757 -38.21971 -37.48539 -36.07398 -35.14341 -34.18688 -33.41886 -32.25969 -31.90024 -30.48476 -29.23575 -27.79269 -26.26064 -25.16528 -24.13415 -23.54172 -22.72592 -21.49448 -20.40234 -19.75819 -19.45267 -18.80538 -18.22983 -17.93717 -17.49067 -17.07796 -16.55518 -16.25562 -16.12190 -15.92379 -15.64281 -15.49921 -15.12859 -14.94193 -14.75668 -14.66421 -14.39130 -14.30954 -14.25124 -14.04150 -13.84603 -13.65089 -13.45181 -13.21706 -13.09245 -12.98986 -12.92296 -12.73272 -12.33043 -12.29596 -12.24882 -12.14769 -12.09281 -11.84645 -11.66326 -11.52891 -11.35827 -11.10162 -10.91887 -10.36374 -9.92611 -9.89062 -9.72322 -9.20403 -8.36540 -5.99916 -0.45691 0.48579 1.01291 1.36477 1.45789 1.56889 1.84984 1.98699 2.06999 2.25283 2.31881 2.43035 2.96512 3.02829 3.08828 3.40881 3.62240 3.65349 3.78427 3.87822 3.92660 3.98772 4.04741 4.08639 4.19589 4.24049 4.32727 4.33644 4.42081 4.51912 4.55815 4.60496 4.70576 4.75833 4.77364 4.84203 4.94223 4.98444 5.04889 5.05998 5.12658 5.16656 5.23918 5.32898 5.46341 5.51374 5.57728 5.58802 5.67188 6.04290 6.04360 6.36510 6.41743 7.11277 7.11562 7.13579 7.36590 7.92626 8.63326 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002013 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.357839 B =13904.178210 C =14897.165504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.265 3.735 3 C 0.221 3.779 4 N -0.457 5.457 5 C -0.331 4.331 6 H 0.079 0.921 7 C 0.003 3.997 8 N -0.898 5.898 9 Si 0.987 3.013 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.288 1.288 13 C 0.459 3.541 14 O -0.619 6.619 15 C -0.095 4.095 16 C -0.107 4.107 17 C 0.117 3.883 18 N -0.604 5.604 19 C 0.544 3.456 20 O -0.589 6.589 21 C -0.223 4.223 22 C -0.013 4.013 23 C -0.094 4.094 24 C -0.105 4.105 25 C -0.129 4.129 26 C -0.112 4.112 27 C -0.132 4.132 28 C -0.112 4.112 29 C 0.115 3.885 30 C -0.114 4.114 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.274 0.726 34 H 0.114 0.886 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.136 0.864 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.051 0.949 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 17.452 11.074 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.053 4.053 3 C 0.095 3.905 4 N -0.177 5.177 5 C -0.458 4.458 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.538 5.538 9 Si 0.812 3.188 10 H -0.200 1.200 11 H -0.189 1.189 12 H -0.214 1.214 13 C 0.249 3.751 14 O -0.504 6.504 15 C -0.117 4.117 16 C -0.146 4.146 17 C -0.005 4.005 18 N -0.335 5.335 19 C 0.337 3.663 20 O -0.472 6.472 21 C -0.243 4.243 22 C -0.032 4.032 23 C -0.094 4.094 24 C -0.123 4.123 25 C -0.147 4.147 26 C -0.130 4.130 27 C -0.149 4.149 28 C -0.130 4.130 29 C -0.007 4.007 30 C -0.153 4.153 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.153 0.847 46 H 0.117 0.883 47 H 0.126 0.874 48 H 0.070 0.930 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.623 17.819 10.686 22.496 hybrid contribution 0.729 -1.196 -1.333 1.934 sum -7.894 16.623 9.353 20.643 Atomic orbital electron populations 1.80886 1.14422 1.12898 1.10696 1.29527 0.95589 0.89477 0.90668 1.19145 0.80674 1.03867 0.86809 1.43827 1.57143 1.05011 1.11696 1.19663 1.29655 0.94718 1.01796 0.90295 1.25835 0.94878 0.99345 0.99710 1.69744 1.26170 1.21292 1.36617 0.84949 0.77686 0.78147 0.78039 1.19978 1.18902 1.21442 1.20985 0.82237 0.82579 0.89322 1.90516 1.49287 1.76613 1.34032 1.21286 0.96789 0.95841 0.97759 1.21681 0.98186 0.95971 0.98714 1.21691 0.83466 0.97463 0.97925 1.48091 1.11015 1.05477 1.68964 1.18695 0.89845 0.81879 0.75879 1.90757 1.46323 1.57302 1.52833 1.23052 0.95586 0.97313 1.08313 1.22432 0.95234 0.95292 0.90284 1.19130 0.92396 0.94487 1.03434 1.21648 0.98318 0.94142 0.98190 1.21442 0.92322 1.01268 0.99691 1.21699 1.00389 0.93410 0.97512 1.21433 0.97029 0.96468 1.00016 1.21679 0.92764 1.00291 0.98234 1.22032 0.89404 0.91166 0.98065 1.21780 0.95745 0.98685 0.99085 0.85589 0.84933 0.91590 0.86778 0.93563 0.89411 0.89668 0.88055 0.83000 0.85408 0.84375 0.83510 0.83634 0.83974 0.84674 0.88262 0.87403 0.93014 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.88 18.54 20.01 0.37 -21.51 16 2 C 0.26 10.56 13.09 89.44 1.17 11.73 16 3 C 0.22 7.94 4.81 84.57 0.41 8.35 16 4 N -0.46 -20.30 2.59 -645.43 -1.67 -21.97 16 5 C -0.33 -16.82 9.40 84.04 0.79 -16.03 16 6 H 0.08 4.40 7.30 -2.91 -0.02 4.38 16 7 C 0.00 0.15 5.16 84.93 0.44 0.59 16 8 N -0.90 -42.89 8.69 21.66 0.19 -42.70 16 9 Si 0.99 40.13 29.56 68.60 2.03 42.16 16 10 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 12 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.46 19.75 6.51 87.65 0.57 20.32 16 14 O -0.62 -32.49 16.11 -3.07 -0.05 -32.54 16 15 C -0.10 -2.92 2.06 -11.51 -0.02 -2.95 16 16 C -0.11 -3.03 5.08 30.68 0.16 -2.87 16 17 C 0.12 2.73 6.44 86.37 0.56 3.29 16 18 N -0.60 -14.65 2.97 -823.06 -2.44 -17.09 16 19 C 0.54 14.71 7.62 86.38 0.66 15.37 16 20 O -0.59 -19.91 15.65 -4.33 -0.07 -19.98 16 21 C -0.22 -4.68 8.73 23.62 0.21 -4.48 16 22 C -0.01 -0.25 9.46 23.84 0.23 -0.03 16 23 C -0.09 -1.66 5.87 -20.14 -0.12 -1.78 16 24 C -0.11 -1.56 9.80 22.57 0.22 -1.34 16 25 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 26 C -0.11 -1.31 10.04 22.35 0.22 -1.09 16 27 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 28 C -0.11 -1.77 9.41 22.57 0.21 -1.56 16 29 C 0.12 2.42 6.35 86.51 0.55 2.96 16 30 C -0.11 -3.33 5.36 30.82 0.17 -3.17 16 31 H 0.13 4.78 6.41 -2.39 -0.02 4.77 16 32 H 0.13 3.30 6.03 -2.39 -0.01 3.28 16 33 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 34 H 0.11 2.77 5.53 -2.39 -0.01 2.76 16 35 H 0.05 1.61 7.93 -2.38 -0.02 1.59 16 36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.08 2.20 6.99 -2.39 -0.02 2.19 16 38 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.15 2.46 3.91 -2.91 -0.01 2.45 16 40 H 0.13 2.71 7.52 -2.91 -0.02 2.69 16 41 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.14 1.80 6.17 -2.91 -0.02 1.79 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.11 1.82 5.36 -2.39 -0.01 1.81 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.06 2.10 7.95 -2.39 -0.02 2.08 16 Total: -1.00 -72.69 404.87 6.21 -66.48 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 1.00 Total: 22.70 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 6.85 Total: 24.45 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.55 Total: -103.26 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.12 Total: -52.53 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -72.69 6.21 -66.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.983 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds