Wall clock time and date at job start Tue Mar 31 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99801 * 2 1 4 4 H 1.48498 * 109.46927 * 239.99720 * 3 2 1 5 5 H 1.48496 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47040 * 119.99944 * 3 2 1 7 7 C 1.37881 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7 12 12 C 1.50699 * 109.47106 * 270.00004 * 11 10 9 13 13 C 1.34514 * 125.78670 * 89.71828 * 12 11 10 14 14 C 1.41378 * 106.83954 * 179.88663 * 13 12 11 15 15 C 1.34518 * 106.84080 * 0.37600 * 14 13 12 16 16 O 1.34295 * 108.41863 * 359.77015 * 15 14 13 17 17 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 10 9 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 10 9 20 20 C 1.50700 * 109.46869 * 179.72354 * 19 17 10 21 21 C 1.34548 * 126.07809 * 125.00266 * 20 19 17 22 22 O 1.34774 * 107.26778 * 179.97438 * 21 20 19 23 23 C 1.34424 * 107.69683 * 0.02562 * 22 21 20 24 24 C 1.47826 * 125.72546 * 179.97438 * 23 22 21 25 25 C 1.39572 * 120.14355 * 179.74583 * 24 23 22 26 26 C 1.37956 * 119.85639 * 179.71948 * 25 24 23 27 27 C 1.38364 * 120.14232 * 0.54944 * 26 25 24 28 28 C 1.38357 * 120.29079 * 359.72430 * 27 26 25 29 29 C 1.37968 * 120.14556 * 0.02562 * 28 27 26 30 30 N 1.31219 * 108.54759 * 359.72289 * 23 22 21 31 31 H 0.96991 * 119.99957 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46867 * 59.99962 * 9 7 2 33 33 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 34 34 H 1.08994 * 109.46996 * 30.00327 * 11 10 9 35 35 H 1.09001 * 109.46578 * 150.00190 * 11 10 9 36 36 H 1.07998 * 126.57973 * 0.02731 * 13 12 11 37 37 H 1.08005 * 126.58032 * 180.17039 * 14 13 12 38 38 H 1.08003 * 125.78426 * 179.75281 * 15 14 13 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 10 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 10 41 41 H 1.07997 * 126.36491 * 0.02562 * 21 20 19 42 42 H 1.08010 * 120.07009 * 359.97438 * 25 24 23 43 43 H 1.07992 * 119.93412 * 180.27465 * 26 25 24 44 44 H 1.07990 * 119.85472 * 179.74288 * 27 26 25 45 45 H 1.08000 * 119.92712 * 180.02562 * 28 27 26 46 46 H 1.07991 * 120.07334 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6801 -4.1688 -1.2702 12 6 1.7638 -5.2828 -1.7063 13 6 0.6687 -5.1451 -2.4753 14 6 0.1166 -6.4365 -2.6367 15 6 0.9025 -7.2851 -1.9499 16 8 1.8986 -6.5807 -1.3885 17 6 2.6403 -4.1254 1.1658 18 8 2.2457 -3.6647 2.2161 19 6 3.6244 -5.2667 1.1660 20 6 3.9539 -5.6455 2.5869 21 6 3.8364 -6.8720 3.1275 22 8 4.2321 -6.7823 4.4127 23 6 4.5855 -5.5061 4.6433 24 6 5.0811 -4.9662 5.9271 25 6 5.4210 -3.6168 6.0355 26 6 5.8774 -3.1180 7.2380 27 6 6.0093 -3.9546 8.3321 28 6 5.6795 -5.2944 8.2299 29 6 5.2170 -5.8049 7.0344 30 7 4.4219 -4.8211 3.5362 31 1 -0.4849 0.8400 -0.0004 32 1 0.6249 -2.5563 -0.8920 33 1 0.6242 -2.5575 0.8881 34 1 2.6884 -3.3868 -2.0294 35 1 3.6895 -4.5588 -1.1392 36 1 0.2861 -4.2249 -2.8915 37 1 -0.7686 -6.6923 -3.2004 38 1 0.7569 -8.3518 -1.8643 39 1 3.1870 -6.1236 0.6536 40 1 4.5350 -4.9612 0.6509 41 1 3.4902 -7.7629 2.6247 42 1 5.3229 -2.9637 5.1809 43 1 6.1365 -2.0731 7.3245 44 1 6.3709 -3.5601 9.2701 45 1 5.7844 -5.9421 9.0877 46 1 4.9596 -6.8507 6.9560 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058202250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:17 Heat of formation + Delta-G solvation = 39.641166 kcal Electronic energy + Delta-G solvation = -31825.652162 eV Core-core repulsion = 27456.287844 eV Total energy + Delta-G solvation = -4369.364318 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.17462 -42.35326 -39.14913 -38.93962 -35.36050 -34.74690 -32.90986 -32.79733 -32.55596 -31.14741 -30.49318 -30.13041 -28.17203 -26.76436 -25.35391 -23.91140 -23.17837 -22.64089 -21.51682 -21.17648 -20.79263 -20.48105 -18.63456 -17.73330 -17.30507 -16.81426 -16.50649 -16.32678 -16.13108 -15.79854 -15.59583 -15.32979 -15.01224 -14.79724 -14.33425 -14.17184 -13.97382 -13.59201 -13.37505 -13.07310 -13.00987 -12.69519 -12.63124 -12.56331 -12.47802 -12.24623 -11.73399 -11.61190 -11.52857 -11.25133 -11.20130 -11.02284 -10.85334 -10.56718 -10.28663 -10.16167 -9.75958 -9.69630 -9.65199 -9.13408 -8.92010 -8.42074 -8.32688 -8.18051 -7.77355 -6.02711 -4.07390 0.61157 1.23151 1.83182 1.87645 2.70516 2.79823 2.86119 3.11147 3.33675 3.38311 3.40556 3.48743 3.71575 3.90527 4.02961 4.46489 4.69614 4.75548 4.82497 4.88988 4.91806 4.95758 5.12892 5.23048 5.23179 5.27340 5.32619 5.38513 5.45022 5.48228 5.59579 5.68886 5.81204 5.86634 5.92712 5.95744 5.98904 6.15379 6.17687 6.27442 6.30252 6.33750 6.42892 6.69412 6.73588 7.03034 7.29448 7.45635 7.52044 7.87280 7.93562 8.23838 8.33325 8.91587 9.08625 9.57668 11.05482 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.007104 B = 0.003155 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3940.699120 B = 8874.021254 C =12366.834217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.249 3.751 10 N -0.596 5.596 11 C 0.190 3.810 12 C -0.026 4.026 13 C -0.193 4.193 14 C -0.213 4.213 15 C -0.052 4.052 16 O -0.179 6.179 17 C 0.513 3.487 18 O -0.513 6.513 19 C -0.067 4.067 20 C 0.022 3.978 21 C -0.074 4.074 22 O -0.200 6.200 23 C 0.220 3.780 24 C -0.009 4.009 25 C -0.068 4.068 26 C -0.121 4.121 27 C -0.106 4.106 28 C -0.125 4.125 29 C -0.094 4.094 30 N -0.432 5.432 31 H 0.263 0.737 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.198 0.802 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.217 0.783 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -16.761 5.177 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C 0.131 3.869 10 N -0.329 5.329 11 C 0.065 3.935 12 C -0.077 4.077 13 C -0.213 4.213 14 C -0.232 4.232 15 C -0.119 4.119 16 O -0.075 6.075 17 C 0.299 3.701 18 O -0.388 6.388 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.145 4.145 22 O -0.087 6.087 23 C 0.016 3.984 24 C -0.010 4.010 25 C -0.087 4.087 26 C -0.139 4.139 27 C -0.125 4.125 28 C -0.143 4.143 29 C -0.113 4.113 30 N -0.160 5.160 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.215 0.785 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.233 0.767 42 H 0.160 0.840 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.854 -15.853 5.898 19.576 hybrid contribution -0.259 0.064 -0.409 0.488 sum 9.595 -15.789 5.490 19.274 Atomic orbital electron populations 1.69926 1.06002 1.27104 1.50332 1.24922 0.94847 0.99171 0.95033 0.86569 0.79528 0.82729 0.78673 1.20212 1.21242 1.20137 1.21401 0.93395 0.90560 1.51215 0.92332 1.19285 0.87315 0.81824 0.98506 1.48296 1.46568 1.34903 1.03125 1.19901 0.93924 0.90597 0.89040 1.23352 1.00792 0.82689 1.00915 1.21714 0.96934 0.98883 1.03791 1.21838 1.02785 0.93252 1.05315 1.23919 0.90084 0.97768 1.00165 1.83966 1.44872 1.18805 1.59906 1.20012 0.82296 0.83549 0.84269 1.90721 1.57081 1.60413 1.30568 1.20154 1.00536 0.99515 0.90500 1.21113 1.02591 0.89639 0.96713 1.24771 1.06629 1.01301 0.81784 1.84439 1.63795 1.31516 1.28921 1.23776 1.01008 0.78152 0.95432 1.17292 1.02408 0.93955 0.87390 1.21324 0.95142 0.93496 0.98767 1.21149 0.99940 1.00338 0.92436 1.21340 0.98641 0.93739 0.98756 1.21030 1.00169 0.95748 0.97308 1.21212 0.98354 0.99701 0.92052 1.70573 1.14857 1.32196 0.98393 0.92688 0.94904 0.93917 0.86537 0.89800 0.83215 0.83790 0.78548 0.87542 0.87628 0.76674 0.84033 0.85072 0.85641 0.85434 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 10 N -0.60 -12.53 2.44 -176.43 -0.43 -12.96 16 11 C 0.19 3.02 5.75 -5.19 -0.03 2.99 16 12 C -0.03 -0.40 6.86 -35.63 -0.24 -0.64 16 13 C -0.19 -2.94 10.81 -39.70 -0.43 -3.37 16 14 C -0.21 -2.74 10.91 -39.70 -0.43 -3.17 16 15 C -0.05 -0.60 12.09 29.42 0.36 -0.24 16 16 O -0.18 -2.46 9.57 5.74 0.05 -2.40 16 17 C 0.51 11.00 7.66 -10.98 -0.08 10.91 16 18 O -0.51 -13.57 15.16 5.55 0.08 -13.48 16 19 C -0.07 -1.05 4.82 -29.03 -0.14 -1.19 16 20 C 0.02 0.36 5.86 -82.88 -0.49 -0.12 16 21 C -0.07 -1.01 12.06 29.43 0.35 -0.66 16 22 O -0.20 -2.96 10.52 4.08 0.04 -2.92 16 23 C 0.22 3.62 7.90 -13.89 -0.11 3.51 16 24 C -0.01 -0.13 5.87 -104.98 -0.62 -0.75 16 25 C -0.07 -0.93 9.69 -39.19 -0.38 -1.31 16 26 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 27 C -0.11 -0.97 10.04 -39.49 -0.40 -1.36 16 28 C -0.12 -1.15 10.03 -39.64 -0.40 -1.54 16 29 C -0.09 -1.05 9.72 -39.18 -0.38 -1.43 16 30 N -0.43 -8.18 10.31 -7.97 -0.08 -8.26 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.12 1.81 8.07 -51.93 -0.42 1.39 16 35 H 0.08 1.08 6.43 -51.93 -0.33 0.74 16 36 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.20 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.11 1.40 6.92 -51.93 -0.36 1.04 16 40 H 0.11 1.46 7.40 -51.93 -0.38 1.07 16 41 H 0.22 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.14 2.13 7.83 -52.48 -0.41 1.72 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.13 1.26 7.90 -52.49 -0.41 0.84 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -37.19 404.82 -8.41 -45.59 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.63 Total: 4.39 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -4.26 Total: -7.07 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.22 Total: -47.10 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.19 -8.41 -45.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058202250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.235 kcal (2) G-P(sol) polarization free energy of solvation -37.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds