Wall clock time and date at job start Tue Mar 31 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99801 * 2 1 4 4 H 1.48498 * 109.46927 * 239.99720 * 3 2 1 5 5 H 1.48496 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47040 * 119.99944 * 3 2 1 7 7 C 1.37881 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7 12 12 C 1.50699 * 109.47106 * 270.00004 * 11 10 9 13 13 C 1.34514 * 125.78670 * 89.71828 * 12 11 10 14 14 C 1.41378 * 106.83954 * 179.88663 * 13 12 11 15 15 C 1.34518 * 106.84080 * 0.37600 * 14 13 12 16 16 O 1.34295 * 108.41863 * 359.77015 * 15 14 13 17 17 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 10 9 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 10 9 20 20 C 1.50700 * 109.46869 * 179.72354 * 19 17 10 21 21 C 1.34548 * 126.07809 * 125.00266 * 20 19 17 22 22 O 1.34774 * 107.26778 * 179.97438 * 21 20 19 23 23 C 1.34424 * 107.69683 * 0.02562 * 22 21 20 24 24 C 1.47826 * 125.72546 * 179.97438 * 23 22 21 25 25 C 1.39572 * 120.14355 * 179.74583 * 24 23 22 26 26 C 1.37956 * 119.85639 * 179.71948 * 25 24 23 27 27 C 1.38364 * 120.14232 * 0.54944 * 26 25 24 28 28 C 1.38357 * 120.29079 * 359.72430 * 27 26 25 29 29 C 1.37968 * 120.14556 * 0.02562 * 28 27 26 30 30 N 1.31219 * 108.54759 * 359.72289 * 23 22 21 31 31 H 0.96991 * 119.99957 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46867 * 59.99962 * 9 7 2 33 33 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 34 34 H 1.08994 * 109.46996 * 30.00327 * 11 10 9 35 35 H 1.09001 * 109.46578 * 150.00190 * 11 10 9 36 36 H 1.07998 * 126.57973 * 0.02731 * 13 12 11 37 37 H 1.08005 * 126.58032 * 180.17039 * 14 13 12 38 38 H 1.08003 * 125.78426 * 179.75281 * 15 14 13 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 10 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 10 41 41 H 1.07997 * 126.36491 * 0.02562 * 21 20 19 42 42 H 1.08010 * 120.07009 * 359.97438 * 25 24 23 43 43 H 1.07992 * 119.93412 * 180.27465 * 26 25 24 44 44 H 1.07990 * 119.85472 * 179.74288 * 27 26 25 45 45 H 1.08000 * 119.92712 * 180.02562 * 28 27 26 46 46 H 1.07991 * 120.07334 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6801 -4.1688 -1.2702 12 6 1.7638 -5.2828 -1.7063 13 6 0.6687 -5.1451 -2.4753 14 6 0.1166 -6.4365 -2.6367 15 6 0.9025 -7.2851 -1.9499 16 8 1.8986 -6.5807 -1.3885 17 6 2.6403 -4.1254 1.1658 18 8 2.2457 -3.6647 2.2161 19 6 3.6244 -5.2667 1.1660 20 6 3.9539 -5.6455 2.5869 21 6 3.8364 -6.8720 3.1275 22 8 4.2321 -6.7823 4.4127 23 6 4.5855 -5.5061 4.6433 24 6 5.0811 -4.9662 5.9271 25 6 5.4210 -3.6168 6.0355 26 6 5.8774 -3.1180 7.2380 27 6 6.0093 -3.9546 8.3321 28 6 5.6795 -5.2944 8.2299 29 6 5.2170 -5.8049 7.0344 30 7 4.4219 -4.8211 3.5362 31 1 -0.4849 0.8400 -0.0004 32 1 0.6249 -2.5563 -0.8920 33 1 0.6242 -2.5575 0.8881 34 1 2.6884 -3.3868 -2.0294 35 1 3.6895 -4.5588 -1.1392 36 1 0.2861 -4.2249 -2.8915 37 1 -0.7686 -6.6923 -3.2004 38 1 0.7569 -8.3518 -1.8643 39 1 3.1870 -6.1236 0.6536 40 1 4.5350 -4.9612 0.6509 41 1 3.4902 -7.7629 2.6247 42 1 5.3229 -2.9637 5.1809 43 1 6.1365 -2.0731 7.3245 44 1 6.3709 -3.5601 9.2701 45 1 5.7844 -5.9421 9.0877 46 1 4.9596 -6.8507 6.9560 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058202250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:16 Heat of formation + Delta-G solvation = 14.791132 kcal Electronic energy + Delta-G solvation = -31826.729740 eV Core-core repulsion = 27456.287844 eV Total energy + Delta-G solvation = -4370.441896 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.32120 -43.41631 -40.65453 -39.95599 -36.97746 -36.07881 -34.89721 -33.88285 -33.72510 -32.03923 -31.74734 -31.41099 -29.67056 -28.29871 -26.75052 -25.06504 -24.78638 -23.74596 -22.60485 -22.31048 -21.91927 -21.60688 -20.13124 -18.85153 -18.75708 -18.31289 -17.93589 -17.49376 -17.44568 -17.23998 -16.66730 -16.52744 -16.31082 -16.26064 -15.83052 -15.29491 -14.99362 -14.69858 -14.53901 -14.41085 -14.28978 -14.00788 -13.89899 -13.88413 -13.72938 -13.53398 -13.27580 -13.18992 -12.99002 -12.69054 -12.54271 -12.40591 -12.23490 -12.19163 -12.07466 -11.77179 -11.47791 -10.85868 -10.78150 -10.64843 -10.51890 -9.97903 -9.67082 -9.35595 -9.21846 -8.23372 -6.37575 -0.34618 0.38958 0.75988 0.80630 1.35285 1.40157 1.47063 1.64103 1.66786 1.72268 1.77143 2.14423 2.35738 2.50304 2.82952 2.88158 3.06837 3.60347 3.63979 3.82894 3.91606 3.99714 4.05550 4.10707 4.18861 4.19950 4.33367 4.39699 4.42475 4.45784 4.53011 4.61895 4.72261 4.81393 4.90070 4.95309 4.98916 5.06182 5.07764 5.12781 5.21379 5.24884 5.43241 5.46785 5.50788 5.51050 5.64286 5.79314 5.93505 6.04820 6.24383 6.63028 6.72432 6.73166 7.27076 7.43850 8.84118 Molecular weight = 366.14amu Principal moments of inertia in cm(-1) A = 0.007104 B = 0.003155 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3940.699120 B = 8874.021254 C =12366.834217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.270 3.730 10 N -0.599 5.599 11 C 0.189 3.811 12 C -0.044 4.044 13 C -0.212 4.212 14 C -0.233 4.233 15 C -0.030 4.030 16 O -0.179 6.179 17 C 0.503 3.497 18 O -0.577 6.577 19 C -0.046 4.046 20 C -0.023 4.023 21 C -0.048 4.048 22 O -0.198 6.198 23 C 0.210 3.790 24 C -0.040 4.040 25 C -0.096 4.096 26 C -0.125 4.125 27 C -0.096 4.096 28 C -0.116 4.116 29 C -0.095 4.095 30 N -0.483 5.483 31 H 0.267 0.733 32 H 0.025 0.975 33 H -0.010 1.010 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.165 0.835 38 H 0.246 0.754 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.268 0.732 42 H 0.110 0.890 43 H 0.148 0.852 44 H 0.163 0.837 45 H 0.165 0.835 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.612 -19.401 5.915 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.149 3.851 10 N -0.331 5.331 11 C 0.066 3.934 12 C -0.095 4.095 13 C -0.232 4.232 14 C -0.252 4.252 15 C -0.097 4.097 16 O -0.075 6.075 17 C 0.292 3.708 18 O -0.456 6.456 19 C -0.086 4.086 20 C -0.144 4.144 21 C -0.118 4.118 22 O -0.085 6.085 23 C 0.006 3.994 24 C -0.042 4.042 25 C -0.115 4.115 26 C -0.143 4.143 27 C -0.114 4.114 28 C -0.134 4.134 29 C -0.115 4.115 30 N -0.212 5.212 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.182 0.818 38 H 0.262 0.738 39 H 0.158 0.842 40 H 0.144 0.856 41 H 0.283 0.717 42 H 0.128 0.872 43 H 0.165 0.835 44 H 0.180 0.820 45 H 0.183 0.817 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.609 -18.524 6.578 22.829 hybrid contribution -0.855 0.796 -0.599 1.313 sum 10.754 -17.728 5.979 21.579 Atomic orbital electron populations 1.70052 1.07583 1.28172 1.51018 1.25840 0.95751 1.02983 0.94405 0.85503 0.78350 0.78167 0.79022 1.18058 1.20314 1.20686 1.21684 0.93360 0.91814 1.51219 0.92640 1.18658 0.87661 0.83417 0.95406 1.48246 1.45539 1.33846 1.05426 1.20074 0.95818 0.91043 0.86471 1.22953 1.01046 0.83390 1.02078 1.21902 0.97418 0.99813 1.04099 1.22138 1.04143 0.92293 1.06649 1.24853 0.88009 0.99359 0.97460 1.83949 1.45586 1.17954 1.59996 1.21067 0.82305 0.84315 0.83145 1.90683 1.59414 1.62692 1.32789 1.20084 0.99478 0.97907 0.91136 1.21414 1.04972 0.90911 0.97094 1.25645 1.03553 1.01728 0.80894 1.84454 1.63647 1.30803 1.29549 1.24216 1.00853 0.78519 0.95788 1.17540 1.04329 0.94580 0.87708 1.21248 0.97530 0.93487 0.99258 1.21399 0.99397 1.01595 0.91878 1.21788 0.96806 0.93518 0.99287 1.21498 0.98140 0.96303 0.97434 1.21449 0.98120 1.00028 0.91858 1.70510 1.16619 1.34054 0.99967 0.92446 0.95707 0.99226 0.86826 0.86166 0.84566 0.81774 0.73768 0.84211 0.85596 0.71688 0.87217 0.83473 0.81956 0.81699 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.01 0.54 5.46 84.66 0.46 1.01 16 3 Si 0.97 46.05 29.54 68.60 2.03 48.08 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 9 C 0.27 14.99 5.16 85.63 0.44 15.43 16 10 N -0.60 -26.30 2.44 -830.49 -2.03 -28.33 16 11 C 0.19 6.01 5.75 85.63 0.49 6.50 16 12 C -0.04 -1.30 6.86 24.83 0.17 -1.13 16 13 C -0.21 -6.49 10.81 22.19 0.24 -6.25 16 14 C -0.23 -5.59 10.91 22.19 0.24 -5.35 16 15 C -0.03 -0.58 12.09 66.97 0.81 0.23 16 16 O -0.18 -4.42 9.57 -2.38 -0.02 -4.44 16 17 C 0.50 22.49 7.66 87.66 0.67 23.16 16 18 O -0.58 -32.71 15.16 -3.04 -0.05 -32.76 16 19 C -0.05 -1.44 4.82 29.10 0.14 -1.30 16 20 C -0.02 -0.77 5.86 41.36 0.24 -0.52 16 21 C -0.05 -1.23 12.06 66.97 0.81 -0.42 16 22 O -0.20 -5.75 10.52 -8.33 -0.09 -5.84 16 23 C 0.21 7.21 7.90 87.32 0.69 7.90 16 24 C -0.04 -1.19 5.87 -20.10 -0.12 -1.31 16 25 C -0.10 -2.81 9.69 22.53 0.22 -2.59 16 26 C -0.12 -2.64 10.03 22.23 0.22 -2.42 16 27 C -0.10 -1.49 10.04 22.33 0.22 -1.26 16 28 C -0.12 -1.80 10.03 22.23 0.22 -1.57 16 29 C -0.10 -2.04 9.72 22.53 0.22 -1.82 16 30 N -0.48 -19.31 10.31 -293.20 -3.02 -22.33 16 31 H 0.27 15.52 8.31 -92.72 -0.77 14.75 16 32 H 0.02 1.39 8.07 -2.39 -0.02 1.38 16 33 H -0.01 -0.68 7.42 -2.38 -0.02 -0.70 16 34 H 0.11 3.64 8.07 -2.39 -0.02 3.62 16 35 H 0.12 2.90 6.43 -2.39 -0.02 2.89 16 36 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.25 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.14 3.31 6.92 -2.38 -0.02 3.29 16 40 H 0.13 3.32 7.40 -2.39 -0.02 3.31 16 41 H 0.27 3.56 8.06 -2.91 -0.02 3.53 16 42 H 0.11 3.79 7.83 -2.91 -0.02 3.77 16 43 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.16 1.34 8.06 -2.92 -0.02 1.32 16 45 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.14 2.55 7.90 -2.92 -0.02 2.53 16 Total: -1.00 -90.28 404.82 4.76 -85.52 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 1.01 Total: 20.78 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 6.64 Total: -3.47 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.76 Total: -107.87 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.16 Total: -43.04 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -90.28 4.76 -85.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058202250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.311 kcal (2) G-P(sol) polarization free energy of solvation -90.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds