Wall clock time and date at job start Tue Mar 31 2020 05:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86805 * 120.00303 * 2 1 4 4 H 1.48502 * 109.47135 * 274.51824 * 3 2 1 5 5 H 1.48502 * 109.46931 * 34.51443 * 3 2 1 6 6 H 1.48503 * 109.46961 * 154.51431 * 3 2 1 7 7 C 1.39892 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00279 * 197.95616 * 7 2 1 9 9 C 1.41217 * 119.99773 * 17.96155 * 7 2 1 10 10 C 1.40841 * 120.17715 * 25.17184 * 9 7 2 11 11 C 1.36439 * 119.80813 * 180.25224 * 10 9 7 12 12 C 1.39316 * 120.18508 * 359.46274 * 11 10 9 13 13 O 1.35671 * 119.81648 * 180.25172 * 12 11 10 14 14 C 1.42899 * 116.99921 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47053 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47025 * 55.00015 * 15 14 13 17 17 O 1.42903 * 109.47240 * 294.99883 * 15 14 13 18 18 C 1.53001 * 109.47017 * 174.99621 * 15 14 13 19 19 N 1.46503 * 109.46868 * 184.99719 * 18 15 14 20 20 N 1.28726 * 125.34021 * 269.69873 * 19 18 15 21 21 N 1.28988 * 108.94073 * 179.82931 * 20 19 18 22 22 C 1.34040 * 107.26877 * 0.42638 * 21 20 19 23 23 C 1.48463 * 126.67651 * 179.71749 * 22 21 20 24 24 C 1.39299 * 120.11856 * 179.75078 * 23 22 21 25 25 C 1.38035 * 119.87883 * 179.72361 * 24 23 22 26 26 C 1.38314 * 120.11961 * 0.55007 * 25 24 23 27 27 C 1.38317 * 120.23442 * 359.72238 * 26 25 24 28 28 C 1.38030 * 120.11761 * 0.02562 * 27 26 25 29 29 N 1.28866 * 125.33932 * 90.00513 * 19 18 15 30 30 C 1.39309 * 120.36677 * 0.26944 * 12 11 10 31 31 C 1.36442 * 120.18431 * 0.02562 * 30 12 11 32 32 H 0.96997 * 119.99710 * 359.97438 * 1 2 3 33 33 H 1.07995 * 120.09460 * 0.02562 * 10 9 7 34 34 H 1.07999 * 119.90624 * 179.73143 * 11 10 9 35 35 H 1.09002 * 109.46827 * 299.99579 * 14 13 12 36 36 H 1.08992 * 109.47401 * 60.00252 * 14 13 12 37 37 H 0.96698 * 113.99839 * 300.00536 * 17 15 14 38 38 H 1.08999 * 109.47442 * 305.00119 * 18 15 14 39 39 H 1.09008 * 109.46639 * 65.00168 * 18 15 14 40 40 H 1.08000 * 120.05953 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.93580 * 180.29851 * 25 24 23 42 42 H 1.07997 * 119.88606 * 179.69989 * 26 25 24 43 43 H 1.07999 * 119.94298 * 180.02562 * 27 26 25 44 44 H 1.08003 * 120.06021 * 180.02562 * 28 27 26 45 45 H 1.07997 * 119.90713 * 180.02562 * 30 12 11 46 46 H 1.07994 * 120.09728 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6233 0.7933 6 1 3.5849 1.4144 0.6024 7 6 2.0082 -1.2115 -0.0005 8 1 3.0487 -1.2344 0.2878 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2298 11 6 -0.3968 -3.5149 -1.5858 12 6 0.0727 -4.7404 -1.1184 13 8 -0.5562 -5.8865 -1.4812 14 6 -0.0237 -7.1092 -0.9676 15 6 -0.8576 -8.2844 -1.4820 16 1 -0.8989 -8.2517 -2.5707 17 8 -2.1819 -8.1968 -0.9522 18 6 -0.2156 -9.5994 -1.0353 19 7 -0.9447 -10.7243 -1.6263 20 7 -1.9477 -11.3262 -1.0888 21 7 -2.3465 -12.2635 -1.8802 22 6 -1.5451 -12.2452 -2.9544 23 6 -1.6181 -13.1479 -4.1308 24 6 -0.7133 -13.0034 -5.1801 25 6 -0.7821 -13.8491 -6.2688 26 6 -1.7543 -14.8314 -6.3243 27 6 -2.6587 -14.9756 -5.2877 28 6 -2.5955 -14.1386 -4.1920 29 7 -0.6792 -11.2699 -2.7631 30 6 1.1841 -4.7956 -0.2802 31 6 1.8217 -3.6475 0.0901 32 1 -0.4849 0.8400 0.0004 33 1 -0.1292 -1.4092 -1.5970 34 1 -1.2591 -3.4807 -2.2352 35 1 1.0082 -7.2237 -1.2994 36 1 -0.0553 -7.0901 0.1217 37 1 -2.2215 -8.2199 0.0137 38 1 0.8233 -9.6267 -1.3642 39 1 -0.2546 -9.6719 0.0517 40 1 0.0431 -12.2336 -5.1399 41 1 -0.0781 -13.7410 -7.0806 42 1 -1.8077 -15.4879 -7.1801 43 1 -3.4156 -15.7445 -5.3358 44 1 -3.3019 -14.2523 -3.3829 45 1 1.5420 -5.7497 0.0774 46 1 2.6834 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058218534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:17 Heat of formation + Delta-G solvation = 87.741104 kcal Electronic energy + Delta-G solvation = -30113.643238 eV Core-core repulsion = 25778.657442 eV Total energy + Delta-G solvation = -4334.985797 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.51634 -39.47880 -39.26728 -37.91695 -36.27037 -35.08030 -33.76885 -33.40115 -31.88332 -31.30893 -30.58572 -29.75037 -29.10914 -27.28425 -24.86532 -24.75311 -23.84332 -22.76379 -22.03007 -21.81437 -20.86331 -20.72182 -18.47198 -17.73055 -17.50736 -17.36632 -16.90458 -16.57297 -16.15044 -15.90991 -15.29924 -15.21816 -14.79121 -14.55743 -14.31622 -14.04074 -13.95616 -13.88245 -13.78298 -13.31965 -13.02029 -12.92654 -12.44011 -12.27561 -12.23529 -11.96725 -11.77819 -11.65530 -11.57106 -11.54580 -11.23141 -11.18197 -11.14272 -11.03521 -10.89398 -10.71688 -10.30325 -10.08322 -9.89767 -9.42544 -9.34912 -9.10659 -8.97579 -7.73385 -7.12631 -6.79278 -4.33228 0.44336 1.00652 1.05873 1.52608 2.16791 2.70469 2.86462 3.05106 3.08480 3.15046 3.38546 3.47186 3.51616 3.77982 3.90304 4.03819 4.33359 4.44989 4.53751 4.57528 4.58961 4.68129 4.71788 4.78291 4.93232 5.00350 5.16616 5.19739 5.33973 5.42699 5.51925 5.57730 5.64009 5.64929 5.81619 5.93688 6.06514 6.08700 6.11404 6.12979 6.51162 6.62213 6.89248 7.02441 7.10512 7.32289 7.37991 7.47203 7.68776 7.93217 8.09697 8.11969 8.33690 8.56501 8.82718 8.89998 10.15568 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.001376 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.900370 B =20338.672895 C =20759.669348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.090 3.910 10 C -0.133 4.133 11 C -0.116 4.116 12 C -0.014 4.014 13 O -0.314 6.314 14 C 0.043 3.957 15 C 0.097 3.903 16 H 0.118 0.882 17 O -0.540 6.540 18 C 0.096 3.904 19 N -0.127 5.127 20 N -0.044 5.044 21 N -0.278 5.278 22 C 0.206 3.794 23 C -0.011 4.011 24 C -0.082 4.082 25 C -0.123 4.123 26 C -0.104 4.104 27 C -0.123 4.123 28 C -0.079 4.079 29 N -0.299 5.299 30 C -0.166 4.166 31 C -0.199 4.199 32 H 0.281 0.719 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.379 0.621 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.093 0.907 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -24.791 -7.081 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.088 3.912 10 C -0.153 4.153 11 C -0.135 4.135 12 C -0.057 4.057 13 O -0.230 6.230 14 C -0.034 4.034 15 C 0.036 3.964 16 H 0.136 0.864 17 O -0.345 6.345 18 C -0.024 4.024 19 N -0.038 5.038 20 N -0.037 5.037 21 N -0.149 5.149 22 C -0.074 4.074 23 C -0.014 4.014 24 C -0.102 4.102 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.141 4.141 28 C -0.099 4.099 29 N -0.149 5.149 30 C -0.185 4.185 31 C -0.219 4.219 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.111 0.889 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.870 -24.275 -7.134 25.371 hybrid contribution 0.938 0.645 0.466 1.230 sum -0.932 -23.630 -6.668 24.570 Atomic orbital electron populations 1.69830 1.07537 1.29265 1.35606 1.25889 0.94722 1.01286 0.92300 0.86308 0.80555 0.80734 0.79168 1.19337 1.20302 1.18625 1.19492 0.98152 0.91239 1.40441 0.90452 1.17615 0.91767 0.92163 0.89701 1.20969 0.98572 0.96275 0.99437 1.19835 1.00729 0.90174 1.02721 1.18571 0.97234 0.84518 1.05391 1.85882 1.54864 1.11835 1.70404 1.22903 0.96995 0.84948 0.98598 1.22263 0.83637 0.89294 1.01232 0.86396 1.86727 1.25253 1.96121 1.26383 1.23055 0.97047 0.81774 1.00558 1.49841 1.20273 1.23327 1.10331 1.78939 1.00661 1.02950 1.21149 1.76018 1.22750 1.14314 1.01798 1.23591 0.91644 0.95690 0.96448 1.17280 0.98626 0.95115 0.90381 1.21229 0.97752 0.98837 0.92390 1.21117 0.99149 0.95645 0.98172 1.21344 0.94690 0.97739 0.98525 1.21117 0.99627 0.99622 0.93717 1.21222 0.96800 0.93359 0.98546 1.74869 1.25408 1.11125 1.03541 1.20370 0.97949 0.97743 1.02435 1.20558 1.03300 0.92503 1.05533 0.90823 0.85730 0.88411 0.91665 0.92044 0.77263 0.85139 0.85506 0.84920 0.85265 0.85583 0.85240 0.84679 0.88914 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.26 11.00 55.54 0.61 -19.65 16 2 C 0.08 1.85 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.99 9.04 -37.83 -0.34 -12.33 16 8 H 0.08 1.92 7.91 -52.49 -0.42 1.51 16 9 C 0.09 2.33 5.57 -106.80 -0.59 1.74 16 10 C -0.13 -3.39 8.64 -39.25 -0.34 -3.73 16 11 C -0.12 -2.73 9.92 -39.83 -0.40 -3.13 16 12 C -0.01 -0.31 6.71 -38.78 -0.26 -0.57 16 13 O -0.31 -5.94 10.09 -23.56 -0.24 -6.18 16 14 C 0.04 0.55 4.37 37.16 0.16 0.71 16 15 C 0.10 1.05 3.49 -26.73 -0.09 0.96 16 16 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 17 O -0.54 -6.80 13.25 -40.07 -0.53 -7.33 16 18 C 0.10 0.75 6.23 -4.04 -0.03 0.73 16 19 N -0.13 -1.44 3.94 -10.63 -0.04 -1.48 16 20 N -0.04 -0.57 13.23 60.35 0.80 0.22 16 21 N -0.28 -3.77 12.23 32.15 0.39 -3.37 16 22 C 0.21 2.57 7.94 -156.31 -1.24 1.33 16 23 C -0.01 -0.11 5.88 -104.89 -0.62 -0.73 16 24 C -0.08 -0.72 9.70 -39.26 -0.38 -1.10 16 25 C -0.12 -0.84 10.03 -39.63 -0.40 -1.24 16 26 C -0.10 -0.64 10.04 -39.52 -0.40 -1.04 16 27 C -0.12 -0.82 10.03 -39.63 -0.40 -1.22 16 28 C -0.08 -0.69 9.70 -39.26 -0.38 -1.08 16 29 N -0.30 -3.66 11.85 32.17 0.38 -3.28 16 30 C -0.17 -3.50 8.96 -39.83 -0.36 -3.85 16 31 C -0.20 -4.67 9.74 -39.25 -0.38 -5.06 16 32 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 33 H 0.12 3.26 6.21 -52.49 -0.33 2.94 16 34 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.07 0.74 7.65 -51.93 -0.40 0.34 16 36 H 0.06 0.70 7.64 -51.93 -0.40 0.30 16 37 H 0.38 3.34 9.05 45.56 0.41 3.75 16 38 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.13 1.11 7.88 -52.49 -0.41 0.69 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 44 H 0.14 1.13 7.89 -52.48 -0.41 0.72 16 45 H 0.09 1.60 6.27 -52.49 -0.33 1.27 16 46 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -32.52 401.14 -8.93 -41.46 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.80 Total: 8.14 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -6.53 Total: -27.84 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 2.14 Total: -27.56 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.77 Total: -13.51 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.52 -8.93 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058218534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.198 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds