Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39718 * 125.78209 * 2 1 4 4 C 1.36156 * 107.86400 * 179.97438 * 3 2 1 5 5 N 1.39349 * 126.26951 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99908 * 0.04844 * 5 4 3 7 7 O 1.21679 * 119.99549 * 359.97438 * 6 5 4 8 8 C 1.46920 * 119.99765 * 179.97438 * 6 5 4 9 9 O 1.34945 * 125.13220 * 0.02562 * 8 6 5 10 10 C 1.34730 * 110.86392 * 180.02562 * 9 8 6 11 11 C 1.40761 * 107.59482 * 0.02562 * 10 9 8 12 12 C 1.35838 * 125.12538 * 179.72415 * 8 6 5 13 13 C 1.50698 * 126.96383 * 359.96331 * 12 8 6 14 14 C 1.39669 * 120.09099 * 180.02562 * 11 10 9 15 15 C 1.50692 * 120.14722 * 179.97438 * 14 11 10 16 16 C 1.36666 * 119.70644 * 359.93768 * 14 11 10 17 17 C 1.38787 * 120.44336 * 0.03922 * 16 14 11 18 18 C 1.37848 * 120.74227 * 0.02562 * 17 16 14 19 19 C 1.50708 * 120.06988 * 179.97438 * 18 17 16 20 20 N 1.35814 * 107.46706 * 0.02562 * 4 3 2 21 21 C 1.46494 * 126.09596 * 180.02562 * 20 4 3 22 22 C 1.50697 * 109.47443 * 269.97984 * 21 20 4 23 23 H 1.08000 * 119.99784 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00476 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99791 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00283 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47100 * 90.00357 * 26 24 22 28 28 H 1.48500 * 109.47160 * 210.00691 * 26 24 22 29 29 H 1.48497 * 109.46983 * 330.00400 * 26 24 22 30 30 N 1.30835 * 125.77310 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47482 * 270.02860 * 1 2 3 32 32 H 1.09000 * 109.47157 * 30.02570 * 1 2 3 33 33 H 1.09001 * 109.47556 * 150.02579 * 1 2 3 34 34 H 1.08005 * 126.07179 * 0.02562 * 3 2 1 35 35 H 0.96997 * 120.00043 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47112 * 90.02901 * 13 12 8 37 37 H 1.09000 * 109.47245 * 210.02841 * 13 12 8 38 38 H 1.09000 * 109.46763 * 330.02586 * 13 12 8 39 39 H 1.09003 * 109.47334 * 270.00256 * 15 14 11 40 40 H 1.09000 * 109.47336 * 29.99868 * 15 14 11 41 41 H 1.09003 * 109.47559 * 150.00474 * 15 14 11 42 42 H 1.07996 * 119.77568 * 180.02562 * 16 14 11 43 43 H 1.08000 * 119.62957 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.46941 * 270.02197 * 19 18 17 45 45 H 1.08998 * 109.46934 * 30.01650 * 19 18 17 46 46 H 1.09000 * 109.47191 * 150.01800 * 19 18 17 47 47 H 1.09004 * 109.47209 * 29.97866 * 21 20 4 48 48 H 1.09005 * 109.47599 * 149.97851 * 21 20 4 49 49 H 0.97000 * 119.99649 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7146 0.0006 5 7 4.7495 1.5299 0.0003 6 6 4.6130 2.8708 0.0003 7 8 3.5029 3.3693 0.0001 8 6 5.8044 3.7305 0.0006 9 8 7.0799 3.2898 0.0003 10 6 7.9445 4.3231 0.0012 11 6 7.1885 5.5105 0.0027 12 6 5.7882 5.0887 -0.0047 13 6 4.5733 5.9804 -0.0126 14 6 7.8318 6.7502 0.0034 15 6 7.0237 8.0222 0.0044 16 6 9.1974 6.8047 0.0038 17 6 9.9477 5.6371 0.0028 18 6 9.3319 4.4038 0.0008 19 6 10.1615 3.1456 -0.0009 20 7 3.6088 -0.6435 0.0004 21 6 4.7856 -1.5159 0.0013 22 6 5.1903 -1.8152 -1.4191 23 1 4.6273 -1.3971 -2.2405 24 6 6.2798 -2.6220 -1.6702 25 7 6.9657 -3.1308 -0.6699 26 14 6.7818 -2.9925 -3.4309 27 1 7.7482 -1.9657 -3.8966 28 1 7.4162 -4.3337 -3.4930 29 1 5.5799 -2.9726 -4.3029 30 7 2.2718 -1.0615 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.9875 2.1598 0.0004 35 1 5.6343 1.1325 0.0004 36 1 4.2770 6.1998 1.0132 37 1 4.8087 6.9107 -0.5296 38 1 3.7556 5.4757 -0.5271 39 1 6.8286 8.3296 -1.0230 40 1 6.0778 7.8513 0.5184 41 1 7.5802 8.8059 0.5186 42 1 9.6960 7.7626 0.0047 43 1 11.0261 5.6954 0.0027 44 1 10.3621 2.8440 -1.0290 45 1 11.1042 3.3313 0.5137 46 1 9.6182 2.3515 0.5113 47 1 5.6072 -1.0172 0.5157 48 1 4.5473 -2.4472 0.5151 49 1 7.7319 -3.6987 -0.8466 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = 58.239177 kcal Electronic energy + Delta-G solvation = -32820.364077 eV Core-core repulsion = 28522.213413 eV Total energy + Delta-G solvation = -4298.150664 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.74260 -40.84434 -39.23220 -38.41074 -35.21458 -34.71563 -33.80747 -32.73159 -32.08014 -30.41512 -29.68687 -29.19952 -28.55292 -27.34005 -26.04062 -25.13355 -23.99883 -22.92985 -22.74817 -21.35907 -19.86347 -19.65271 -19.30921 -17.76809 -17.19241 -16.86454 -16.64565 -16.47533 -15.61191 -15.50421 -15.06208 -14.94929 -14.52060 -14.23133 -14.05607 -13.95281 -13.85918 -13.49799 -13.39083 -13.10043 -12.99179 -12.89025 -12.84177 -12.78391 -12.55928 -12.50265 -12.07486 -11.97853 -11.82665 -11.65794 -11.60419 -11.54962 -11.10237 -11.07776 -10.88647 -10.49982 -10.34623 -10.12571 -9.85661 -9.81642 -9.64615 -8.83175 -8.71586 -8.18291 -7.93787 -7.49924 -6.32953 -4.41375 0.34822 1.11743 1.57655 2.27452 2.53438 2.79009 3.16765 3.19314 3.23899 3.29900 3.38356 3.58377 3.70693 4.19726 4.24999 4.27458 4.52055 4.64593 4.74756 4.87197 4.94343 5.00460 5.13942 5.22500 5.30655 5.31522 5.32470 5.44542 5.51668 5.54735 5.58143 5.65724 5.70598 5.77977 5.95540 5.97407 6.01123 6.09480 6.11767 6.16542 6.18930 6.24701 6.27022 6.34935 6.39821 6.60403 6.81988 6.90020 7.02177 7.44038 7.51606 7.59976 7.77371 7.80464 8.13509 8.58494 8.68843 9.26183 10.74297 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.007964 B = 0.003296 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.828329 B = 8494.392314 C =11408.163872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.298 3.702 5 N -0.626 5.626 6 C 0.607 3.393 7 O -0.490 6.490 8 C -0.030 4.030 9 O -0.177 6.177 10 C 0.081 3.919 11 C -0.138 4.138 12 C -0.073 4.073 13 C -0.098 4.098 14 C -0.031 4.031 15 C -0.121 4.121 16 C -0.140 4.140 17 C -0.084 4.084 18 C -0.079 4.079 19 C -0.116 4.116 20 N -0.343 5.343 21 C 0.256 3.744 22 C -0.541 4.541 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.906 3.094 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.271 1.271 30 N -0.280 5.280 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.163 0.837 35 H 0.422 0.578 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 21.478 2.964 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.321 4.321 4 C 0.076 3.924 5 N -0.271 5.271 6 C 0.393 3.607 7 O -0.365 6.365 8 C -0.080 4.080 9 O -0.079 6.079 10 C 0.032 3.968 11 C -0.139 4.139 12 C -0.076 4.076 13 C -0.154 4.154 14 C -0.031 4.031 15 C -0.178 4.178 16 C -0.158 4.158 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.173 4.173 20 N -0.129 5.129 21 C 0.139 3.861 22 C -0.580 4.580 23 H 0.083 0.917 24 C -0.136 4.136 25 N -0.527 5.527 26 Si 0.732 3.268 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.196 1.196 30 N -0.105 5.105 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.180 0.820 35 H 0.260 0.740 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.062 0.938 48 H 0.076 0.924 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.251 20.056 3.021 20.541 hybrid contribution 1.240 0.226 -0.963 1.586 sum 4.491 20.282 2.058 20.875 Atomic orbital electron populations 1.20026 0.87472 1.02512 1.02090 1.22015 0.96575 0.90919 1.01956 1.21255 0.88911 1.00512 1.21407 1.17949 0.87594 0.83416 1.03470 1.42540 1.09032 1.05073 1.70473 1.16372 0.86188 0.80558 0.77550 1.90780 1.23115 1.73541 1.49059 1.21412 0.82317 0.93035 1.11225 1.84066 1.13914 1.33716 1.76188 1.19495 0.91232 0.84683 1.01381 1.19586 0.92030 0.93791 1.08478 1.21305 0.94152 0.91949 1.00170 1.20589 0.93763 0.97812 1.03207 1.19093 0.93652 0.93018 0.97368 1.20940 1.00140 0.93945 1.02759 1.20634 0.92787 0.98639 1.03735 1.20866 1.00049 0.90416 0.98871 1.18876 0.87960 0.96808 1.04294 1.20783 0.99097 0.94286 1.03102 1.49534 1.06550 1.01950 1.54855 1.19651 0.77774 0.89710 0.99006 1.21333 1.13422 1.31918 0.91290 0.91677 1.24928 0.95646 0.94856 0.98188 1.69919 1.19137 1.32571 1.31035 0.86359 0.78871 0.77854 0.83690 1.20307 1.20741 1.19577 1.77353 0.86088 1.21811 1.25243 0.91325 0.91080 0.91456 0.82003 0.74025 0.90320 0.90927 0.88810 0.90685 0.90689 0.91161 0.85205 0.84615 0.90650 0.91000 0.90855 0.93812 0.92402 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.53 16 2 C 0.05 1.00 7.20 -82.46 -0.59 0.41 16 3 C -0.29 -5.87 9.58 -39.78 -0.38 -6.25 16 4 C 0.30 6.40 7.68 -152.77 -1.17 5.22 16 5 N -0.63 -11.83 5.41 -12.46 -0.07 -11.90 16 6 C 0.61 10.47 7.76 -12.74 -0.10 10.38 16 7 O -0.49 -8.71 11.74 5.21 0.06 -8.65 16 8 C -0.03 -0.47 7.06 -36.93 -0.26 -0.73 16 9 O -0.18 -2.78 10.28 2.74 0.03 -2.75 16 10 C 0.08 1.13 7.07 -38.36 -0.27 0.86 16 11 C -0.14 -1.78 6.15 -105.19 -0.65 -2.42 16 12 C -0.07 -0.98 6.38 -102.27 -0.65 -1.63 16 13 C -0.10 -1.06 8.65 36.00 0.31 -0.75 16 14 C -0.03 -0.32 5.88 -104.66 -0.62 -0.93 16 15 C -0.12 -0.88 9.17 36.00 0.33 -0.55 16 16 C -0.14 -1.23 9.63 -39.95 -0.38 -1.61 16 17 C -0.08 -0.77 9.67 -39.52 -0.38 -1.15 16 18 C -0.08 -0.91 5.89 -104.49 -0.62 -1.53 16 19 C -0.12 -1.20 10.02 36.01 0.36 -0.84 16 20 N -0.34 -8.16 3.62 -61.45 -0.22 -8.38 16 21 C 0.26 6.52 6.02 -5.20 -0.03 6.49 16 22 C -0.54 -14.79 9.39 -34.44 -0.32 -15.12 16 23 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 24 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 25 N -0.89 -24.58 13.29 55.43 0.74 -23.85 16 26 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 30 N -0.28 -6.52 12.56 33.64 0.42 -6.10 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.16 3.10 5.82 -52.48 -0.31 2.80 16 35 H 0.42 7.81 7.70 -40.82 -0.31 7.50 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.62 6.33 -51.93 -0.33 0.29 16 38 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.54 5.89 -51.93 -0.31 0.23 16 41 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 47 H 0.04 1.09 7.52 -51.93 -0.39 0.70 16 48 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 410.00 15.07 6.18 6.18 Total: -1.00 -31.55 410.00 -9.62 -41.17 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.59 Total: 7.26 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -5.15 Total: -8.96 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.87 Total: -50.23 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.55 -9.62 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.410 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds