Wall clock time and date at job start Tue Mar 31 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39718 * 125.78209 * 2 1 4 4 C 1.36156 * 107.86400 * 179.97438 * 3 2 1 5 5 N 1.39349 * 126.26951 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99908 * 0.04844 * 5 4 3 7 7 O 1.21679 * 119.99549 * 359.97438 * 6 5 4 8 8 C 1.46920 * 119.99765 * 179.97438 * 6 5 4 9 9 O 1.34945 * 125.13220 * 0.02562 * 8 6 5 10 10 C 1.34730 * 110.86392 * 180.02562 * 9 8 6 11 11 C 1.40761 * 107.59482 * 0.02562 * 10 9 8 12 12 C 1.35838 * 125.12538 * 179.72415 * 8 6 5 13 13 C 1.50698 * 126.96383 * 359.96331 * 12 8 6 14 14 C 1.39669 * 120.09099 * 180.02562 * 11 10 9 15 15 C 1.50692 * 120.14722 * 179.97438 * 14 11 10 16 16 C 1.36666 * 119.70644 * 359.93768 * 14 11 10 17 17 C 1.38787 * 120.44336 * 0.03922 * 16 14 11 18 18 C 1.37848 * 120.74227 * 0.02562 * 17 16 14 19 19 C 1.50708 * 120.06988 * 179.97438 * 18 17 16 20 20 N 1.35814 * 107.46706 * 0.02562 * 4 3 2 21 21 C 1.46494 * 126.09596 * 180.02562 * 20 4 3 22 22 C 1.50697 * 109.47443 * 269.97984 * 21 20 4 23 23 H 1.08000 * 119.99784 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00476 * 179.97438 * 22 21 20 25 25 N 1.31519 * 119.99791 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00283 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47100 * 90.00357 * 26 24 22 28 28 H 1.48500 * 109.47160 * 210.00691 * 26 24 22 29 29 H 1.48497 * 109.46983 * 330.00400 * 26 24 22 30 30 N 1.30835 * 125.77310 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47482 * 270.02860 * 1 2 3 32 32 H 1.09000 * 109.47157 * 30.02570 * 1 2 3 33 33 H 1.09001 * 109.47556 * 150.02579 * 1 2 3 34 34 H 1.08005 * 126.07179 * 0.02562 * 3 2 1 35 35 H 0.96997 * 120.00043 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47112 * 90.02901 * 13 12 8 37 37 H 1.09000 * 109.47245 * 210.02841 * 13 12 8 38 38 H 1.09000 * 109.46763 * 330.02586 * 13 12 8 39 39 H 1.09003 * 109.47334 * 270.00256 * 15 14 11 40 40 H 1.09000 * 109.47336 * 29.99868 * 15 14 11 41 41 H 1.09003 * 109.47559 * 150.00474 * 15 14 11 42 42 H 1.07996 * 119.77568 * 180.02562 * 16 14 11 43 43 H 1.08000 * 119.62957 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.46941 * 270.02197 * 19 18 17 45 45 H 1.08998 * 109.46934 * 30.01650 * 19 18 17 46 46 H 1.09000 * 109.47191 * 150.01800 * 19 18 17 47 47 H 1.09004 * 109.47209 * 29.97866 * 21 20 4 48 48 H 1.09005 * 109.47599 * 149.97851 * 21 20 4 49 49 H 0.97000 * 119.99649 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7146 0.0006 5 7 4.7495 1.5299 0.0003 6 6 4.6130 2.8708 0.0003 7 8 3.5029 3.3693 0.0001 8 6 5.8044 3.7305 0.0006 9 8 7.0799 3.2898 0.0003 10 6 7.9445 4.3231 0.0012 11 6 7.1885 5.5105 0.0027 12 6 5.7882 5.0887 -0.0047 13 6 4.5733 5.9804 -0.0126 14 6 7.8318 6.7502 0.0034 15 6 7.0237 8.0222 0.0044 16 6 9.1974 6.8047 0.0038 17 6 9.9477 5.6371 0.0028 18 6 9.3319 4.4038 0.0008 19 6 10.1615 3.1456 -0.0009 20 7 3.6088 -0.6435 0.0004 21 6 4.7856 -1.5159 0.0013 22 6 5.1903 -1.8152 -1.4191 23 1 4.6273 -1.3971 -2.2405 24 6 6.2798 -2.6220 -1.6702 25 7 6.9657 -3.1308 -0.6699 26 14 6.7818 -2.9925 -3.4309 27 1 7.7482 -1.9657 -3.8966 28 1 7.4162 -4.3337 -3.4930 29 1 5.5799 -2.9726 -4.3029 30 7 2.2718 -1.0615 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.9875 2.1598 0.0004 35 1 5.6343 1.1325 0.0004 36 1 4.2770 6.1998 1.0132 37 1 4.8087 6.9107 -0.5296 38 1 3.7556 5.4757 -0.5271 39 1 6.8286 8.3296 -1.0230 40 1 6.0778 7.8513 0.5184 41 1 7.5802 8.8059 0.5186 42 1 9.6960 7.7626 0.0047 43 1 11.0261 5.6954 0.0027 44 1 10.3621 2.8440 -1.0290 45 1 11.1042 3.3313 0.5137 46 1 9.6182 2.3515 0.5113 47 1 5.6072 -1.0172 0.5157 48 1 4.5473 -2.4472 0.5151 49 1 7.7319 -3.6987 -0.8466 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058226689.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:10 Heat of formation + Delta-G solvation = 41.680536 kcal Electronic energy + Delta-G solvation = -32821.082113 eV Core-core repulsion = 28522.213413 eV Total energy + Delta-G solvation = -4298.868700 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.75059 -42.44014 -40.62551 -39.29646 -36.53396 -35.91226 -35.61159 -33.90952 -33.60270 -31.49397 -30.73327 -30.40908 -29.98838 -28.47029 -27.83814 -25.93841 -25.15828 -24.64837 -23.73729 -22.64600 -21.39500 -21.03851 -20.29974 -19.10330 -18.90336 -18.33047 -17.93962 -17.75422 -16.99246 -16.63118 -16.50477 -16.26595 -15.93329 -15.57901 -15.54373 -14.87151 -14.63884 -14.59518 -14.48260 -14.34699 -14.26260 -14.09394 -13.90054 -13.76700 -13.63506 -13.59711 -13.46105 -13.32778 -13.15134 -12.95730 -12.75179 -12.72144 -12.38998 -12.34718 -12.31149 -12.07798 -11.94152 -11.76159 -11.54642 -11.18037 -10.80878 -10.79651 -9.76590 -9.68269 -9.21429 -8.97993 -8.41258 -6.59127 -0.66117 0.26950 0.50753 1.00179 1.08288 1.31726 1.33063 1.44137 1.50175 1.74951 2.05569 2.06385 2.29646 2.58039 2.88862 3.10313 3.40288 3.59673 3.75950 3.78357 3.91414 4.09539 4.13534 4.18851 4.32413 4.41462 4.51627 4.64796 4.65365 4.68441 4.70951 4.71697 4.74031 4.78582 4.80597 4.86804 4.88843 4.90317 4.91764 5.08825 5.14565 5.16573 5.18578 5.23839 5.38016 5.41313 5.45490 5.50249 5.57063 5.70879 5.89975 5.93792 6.00992 6.15572 6.48277 6.64763 6.94214 7.12739 8.65569 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.007964 B = 0.003296 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.828329 B = 8494.392314 C =11408.163872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.061 3.939 3 C -0.295 4.295 4 C 0.293 3.707 5 N -0.632 5.632 6 C 0.610 3.390 7 O -0.499 6.499 8 C -0.071 4.071 9 O -0.202 6.202 10 C 0.053 3.947 11 C -0.160 4.160 12 C -0.051 4.051 13 C -0.097 4.097 14 C -0.032 4.032 15 C -0.123 4.123 16 C -0.137 4.137 17 C -0.067 4.067 18 C -0.105 4.105 19 C -0.114 4.114 20 N -0.369 5.369 21 C 0.274 3.726 22 C -0.559 4.559 23 H 0.047 0.953 24 C 0.027 3.973 25 N -0.913 5.913 26 Si 0.969 3.031 27 H -0.266 1.266 28 H -0.270 1.270 29 H -0.276 1.276 30 N -0.323 5.323 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.176 0.824 35 H 0.419 0.581 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.169 0.831 43 H 0.171 0.829 44 H 0.073 0.927 45 H 0.098 0.902 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.031 0.969 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 25.053 2.294 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.326 4.326 4 C 0.071 3.929 5 N -0.278 5.278 6 C 0.399 3.601 7 O -0.375 6.375 8 C -0.120 4.120 9 O -0.105 6.105 10 C 0.005 3.995 11 C -0.161 4.161 12 C -0.054 4.054 13 C -0.153 4.153 14 C -0.032 4.032 15 C -0.179 4.179 16 C -0.154 4.154 17 C -0.085 4.085 18 C -0.106 4.106 19 C -0.170 4.170 20 N -0.154 5.154 21 C 0.155 3.845 22 C -0.597 4.597 23 H 0.066 0.934 24 C -0.175 4.175 25 N -0.551 5.551 26 Si 0.793 3.207 27 H -0.191 1.191 28 H -0.194 1.194 29 H -0.201 1.201 30 N -0.148 5.148 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.193 0.807 35 H 0.256 0.744 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.186 0.814 43 H 0.188 0.812 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.286 23.658 2.362 24.159 hybrid contribution 0.993 -0.666 -0.702 1.387 sum 5.279 22.992 1.659 23.648 Atomic orbital electron populations 1.20252 0.83475 1.04086 1.04047 1.22924 0.98895 0.89788 0.98876 1.21516 0.88450 1.01198 1.21462 1.18354 0.88964 0.82889 1.02683 1.42687 1.08258 1.05611 1.71217 1.16621 0.86981 0.79896 0.76588 1.90734 1.23706 1.73495 1.49539 1.21123 0.82012 0.93451 1.15436 1.83999 1.14203 1.34974 1.77284 1.20095 0.92276 0.84826 1.02293 1.19828 0.91396 0.94743 1.10130 1.21746 0.95599 0.91333 0.96736 1.20702 0.92142 0.98231 1.04191 1.19560 0.94715 0.92991 0.95909 1.21042 1.00048 0.92964 1.03817 1.21134 0.92294 1.00092 1.01896 1.21365 1.01869 0.89414 0.95828 1.19227 0.87200 0.98317 1.05840 1.20771 0.99832 0.93410 1.03027 1.49323 1.06423 1.02580 1.57115 1.19188 0.78544 0.88920 0.97853 1.21409 1.13980 1.32736 0.91562 0.93442 1.25715 0.95272 0.94265 1.02256 1.69996 1.19433 1.32715 1.32925 0.85386 0.78389 0.78347 0.78595 1.19124 1.19425 1.20068 1.77304 0.86125 1.23690 1.27717 0.89028 0.88488 0.90853 0.80696 0.74355 0.88933 0.88131 0.90240 0.89519 0.90750 0.88747 0.81398 0.81159 0.90842 0.88310 0.93306 0.94239 0.95111 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.24 0.74 -0.92 16 2 C 0.06 2.44 7.20 43.06 0.31 2.75 16 3 C -0.29 -12.21 9.58 22.14 0.21 -12.00 16 4 C 0.29 13.26 7.68 131.20 1.01 14.26 16 5 N -0.63 -25.71 5.41 -311.56 -1.69 -27.39 16 6 C 0.61 22.31 7.76 86.52 0.67 22.98 16 7 O -0.50 -18.27 11.74 -4.28 -0.05 -18.32 16 8 C -0.07 -2.34 7.06 23.99 0.17 -2.17 16 9 O -0.20 -6.83 10.28 -13.13 -0.13 -6.96 16 10 C 0.05 1.52 7.07 23.06 0.16 1.68 16 11 C -0.16 -4.01 6.15 -20.23 -0.12 -4.13 16 12 C -0.05 -1.38 6.38 -18.34 -0.12 -1.50 16 13 C -0.10 -1.99 8.65 71.24 0.62 -1.37 16 14 C -0.03 -0.55 5.88 -19.89 -0.12 -0.67 16 15 C -0.12 -1.30 9.17 71.23 0.65 -0.64 16 16 C -0.14 -1.84 9.63 22.03 0.21 -1.63 16 17 C -0.07 -1.02 9.67 22.31 0.22 -0.80 16 18 C -0.11 -2.37 5.89 -19.78 -0.12 -2.49 16 19 C -0.11 -2.36 10.02 71.24 0.71 -1.65 16 20 N -0.37 -18.60 3.62 -348.34 -1.26 -19.86 16 21 C 0.27 14.92 6.02 85.63 0.52 15.44 16 22 C -0.56 -32.10 9.39 25.60 0.24 -31.86 16 23 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 24 C 0.03 1.48 5.46 84.65 0.46 1.94 16 25 N -0.91 -51.90 13.29 21.45 0.28 -51.61 16 26 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 N -0.32 -15.70 12.56 -47.48 -0.60 -16.29 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.18 6.72 5.82 -2.91 -0.02 6.70 16 35 H 0.42 17.15 7.70 -92.71 -0.71 16.44 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 1.47 6.33 -2.39 -0.02 1.46 16 38 H 0.08 1.90 6.38 -2.39 -0.02 1.89 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.81 5.89 -2.39 -0.01 0.80 16 41 H 0.09 0.58 8.08 -2.39 -0.02 0.56 16 42 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 44 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.10 1.43 8.09 -2.39 -0.02 1.41 16 46 H 0.05 1.22 8.09 -2.39 -0.02 1.20 16 47 H 0.04 2.14 7.52 -2.38 -0.02 2.12 16 48 H 0.03 1.80 8.14 -2.38 -0.02 1.79 16 49 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -72.86 410.00 5.31 -67.55 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.29 Total: 29.80 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.43 Total: -2.75 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -3.26 Total: -115.16 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.19 Total: -25.29 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.86 5.31 -67.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226689.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.233 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds