Wall clock time and date at job start Tue Mar 31 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.46972 * 180.02562 * 8 6 5 10 10 C 1.38330 * 120.01569 * 269.72845 * 9 8 6 11 11 Cl 1.73609 * 120.00635 * 0.02562 * 10 9 8 12 12 C 1.38358 * 119.98843 * 179.70061 * 10 9 8 13 13 C 1.38213 * 120.01385 * 0.59707 * 12 10 9 14 14 C 1.38228 * 120.02349 * 359.68122 * 13 12 10 15 15 C 1.38328 * 120.01240 * 90.00567 * 9 8 6 16 16 Cl 1.73599 * 120.00871 * 359.97438 * 15 9 8 17 17 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 18 18 C 1.46491 * 126.04623 * 179.87688 * 17 4 3 19 19 C 1.50702 * 109.46957 * 269.71277 * 18 17 4 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 29 29 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 30 30 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 31 31 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 32 32 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 33 33 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 34 34 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 35 35 H 1.08005 * 119.99616 * 180.31767 * 12 10 9 36 36 H 1.08004 * 119.98912 * 179.69752 * 13 12 10 37 37 H 1.08001 * 119.98889 * 180.02562 * 14 13 12 38 38 H 1.09004 * 109.47166 * 149.71543 * 18 17 4 39 39 H 1.08994 * 109.47507 * 29.71250 * 18 17 4 40 40 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4153 5.1957 0.0307 10 6 5.2314 5.8663 -1.1652 11 17 5.4872 5.0416 -2.6713 12 6 4.8369 7.1924 -1.1608 13 6 4.6387 7.8508 0.0382 14 6 4.8279 7.1829 1.2336 15 6 5.2163 5.8549 1.2304 16 17 5.4532 5.0161 2.7317 17 7 3.6093 -0.6405 0.0013 18 6 4.7870 -1.5116 0.0026 19 6 5.1921 -1.8109 -1.4178 20 1 4.6288 -1.3935 -2.2393 21 6 6.2856 -2.6124 -1.6685 22 7 6.9718 -3.1203 -0.6681 23 14 6.7923 -2.9770 -3.4290 24 1 7.1127 -1.7052 -4.1255 25 1 7.9891 -3.8562 -3.4277 26 1 5.6777 -3.6601 -4.1337 27 7 2.2731 -1.0608 0.0005 28 1 -0.3634 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.9901 2.1596 -0.0009 32 1 5.6359 1.1294 0.0155 33 1 6.4297 3.5415 0.9182 34 1 6.4372 3.5481 -0.8617 35 1 4.6883 7.7147 -2.0944 36 1 4.3355 8.8874 0.0412 37 1 4.6724 7.6977 2.1701 38 1 4.5494 -2.4431 0.5166 39 1 5.6079 -1.0120 0.5169 40 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058244781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:14 Heat of formation + Delta-G solvation = 33.129708 kcal Electronic energy + Delta-G solvation = -27714.314999 eV Core-core repulsion = 23581.685633 eV Total energy + Delta-G solvation = -4132.629366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.45592 -41.13081 -39.96594 -37.80776 -37.29278 -36.27447 -35.59950 -34.20787 -33.82735 -31.62785 -30.88341 -30.17399 -28.51881 -27.80990 -24.82756 -23.88403 -23.82037 -22.31199 -21.26156 -20.74138 -18.90702 -18.52301 -18.18945 -17.87859 -17.50831 -16.77857 -16.51566 -16.40056 -16.03665 -15.56105 -15.44876 -15.36437 -14.71550 -14.54240 -14.44552 -14.23500 -14.05416 -13.71874 -13.48466 -13.39369 -13.29645 -13.20033 -13.10722 -12.91182 -12.71796 -12.54245 -12.29759 -12.12598 -11.95922 -11.90402 -11.89609 -11.70451 -11.49435 -10.97863 -10.77241 -9.89146 -9.74285 -9.63999 -9.07118 -8.37452 -6.54874 -0.04245 -0.01746 0.78000 0.80695 1.24857 1.33495 1.36128 1.38184 1.47006 1.61922 2.04996 2.15880 2.33159 2.48290 2.92930 3.28900 3.56303 3.67395 3.83033 3.87223 4.18028 4.23392 4.28894 4.33613 4.39334 4.59473 4.61429 4.71622 4.82714 4.88287 4.89030 4.95476 5.04151 5.08486 5.20926 5.21276 5.23107 5.49756 5.58909 5.75838 5.95952 6.13202 6.25952 6.55638 6.92140 7.02479 7.17054 8.68874 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.003185 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.641918 B = 8790.287511 C = 9815.571207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.306 4.306 4 C 0.302 3.698 5 N -0.641 5.641 6 C 0.530 3.470 7 O -0.524 6.524 8 C -0.104 4.104 9 C -0.068 4.068 10 C -0.027 4.027 11 Cl -0.065 7.065 12 C -0.106 4.106 13 C -0.082 4.082 14 C -0.106 4.106 15 C -0.026 4.026 16 Cl -0.062 7.062 17 N -0.367 5.367 18 C 0.273 3.727 19 C -0.557 4.557 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.967 3.033 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.278 1.278 27 N -0.331 5.331 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.167 0.833 32 H 0.421 0.579 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.027 0.973 39 H 0.048 0.952 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 25.063 2.560 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.337 4.337 4 C 0.080 3.920 5 N -0.288 5.288 6 C 0.318 3.682 7 O -0.398 6.398 8 C -0.143 4.143 9 C -0.070 4.070 10 C -0.054 4.054 11 Cl -0.036 7.036 12 C -0.125 4.125 13 C -0.100 4.100 14 C -0.124 4.124 15 C -0.053 4.053 16 Cl -0.033 7.033 17 N -0.152 5.152 18 C 0.154 3.846 19 C -0.595 4.595 20 H 0.065 0.935 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.195 1.195 26 H -0.203 1.203 27 N -0.156 5.156 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.184 0.816 32 H 0.258 0.742 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.179 0.821 36 H 0.198 0.802 37 H 0.181 0.819 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.473 23.833 2.622 24.022 hybrid contribution 1.108 -0.569 -0.745 1.451 sum -0.366 23.264 1.877 23.343 Atomic orbital electron populations 1.20217 0.83944 1.03846 1.03850 1.22879 0.98715 0.90060 0.99041 1.21445 0.89020 1.00745 1.22537 1.18290 0.89462 0.82798 1.01491 1.42942 1.07655 1.05915 1.72328 1.20807 0.91872 0.80565 0.74951 1.90618 1.27668 1.73737 1.47783 1.20748 0.95523 0.89843 1.08236 1.18879 1.02304 0.94430 0.91394 1.20858 1.04106 0.94396 0.86067 1.98401 1.94911 1.79159 1.31152 1.21491 0.98095 0.91579 1.01331 1.21529 0.96906 1.01857 0.89705 1.21499 0.98081 0.91487 1.01336 1.20826 1.04057 0.94270 0.86100 1.98390 1.95172 1.78459 1.31309 1.49150 1.06301 1.02837 1.56941 1.19208 0.78624 0.88969 0.97785 1.21373 1.13581 1.32914 0.91617 0.93510 1.25664 0.95351 0.94283 1.01995 1.69983 1.19354 1.32852 1.32890 0.85475 0.77814 0.78697 0.78938 1.19041 1.19545 1.20330 1.77301 0.86417 1.23610 1.28314 0.89218 0.88890 0.90889 0.81567 0.74192 0.85148 0.85538 0.82106 0.80208 0.81942 0.95524 0.93448 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.23 0.74 -0.99 16 2 C 0.06 2.39 7.21 43.07 0.31 2.70 16 3 C -0.31 -12.83 9.58 22.14 0.21 -12.62 16 4 C 0.30 13.22 7.66 131.32 1.01 14.22 16 5 N -0.64 -23.22 5.41 -308.55 -1.67 -24.90 16 6 C 0.53 16.98 7.79 87.66 0.68 17.67 16 7 O -0.52 -19.08 13.16 -3.07 -0.04 -19.12 16 8 C -0.10 -2.49 5.04 29.10 0.15 -2.34 16 9 C -0.07 -1.53 4.38 -19.82 -0.09 -1.62 16 10 C -0.03 -0.57 6.31 22.32 0.14 -0.43 16 11 Cl -0.07 -1.50 27.29 -2.72 -0.07 -1.57 16 12 C -0.11 -1.57 9.83 22.29 0.22 -1.35 16 13 C -0.08 -0.91 10.04 22.26 0.22 -0.68 16 14 C -0.11 -1.50 9.83 22.30 0.22 -1.28 16 15 C -0.03 -0.52 6.31 22.32 0.14 -0.37 16 16 Cl -0.06 -1.32 27.30 -2.72 -0.07 -1.39 16 17 N -0.37 -18.02 3.60 -348.73 -1.26 -19.27 16 18 C 0.27 14.31 6.01 85.64 0.51 14.82 16 19 C -0.56 -30.88 9.39 25.60 0.24 -30.64 16 20 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 21 C 0.03 1.55 5.46 84.66 0.46 2.01 16 22 N -0.91 -50.38 13.29 21.45 0.28 -50.09 16 23 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 N -0.33 -16.08 12.56 -47.45 -0.60 -16.68 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.17 6.75 5.83 -2.91 -0.02 6.73 16 32 H 0.42 14.17 7.96 -92.70 -0.74 13.43 16 33 H 0.13 2.68 6.90 -2.39 -0.02 2.66 16 34 H 0.13 2.76 6.89 -2.39 -0.02 2.74 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.05 2.40 7.49 -2.39 -0.02 2.38 16 40 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -70.66 376.71 4.15 -66.51 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.37 Total: 22.86 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.18 Total: -0.91 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.24 Total: -110.94 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.04 Total: -19.12 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.15 Total: -2.96 kcal Total: -70.66 4.15 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058244781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.637 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds