Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39759 * 125.84043 * 2 1 4 4 C 1.36106 * 107.82934 * 180.13854 * 3 2 1 5 5 N 1.39472 * 126.21886 * 179.90505 * 4 3 2 6 6 C 1.34774 * 119.99702 * 359.68849 * 5 4 3 7 7 O 1.21296 * 120.00278 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00014 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.46982 * 180.02562 * 8 6 5 10 10 C 1.38234 * 120.00257 * 90.00130 * 9 8 6 11 11 C 1.38238 * 119.99675 * 180.27927 * 10 9 8 12 12 C 1.38228 * 120.00120 * 359.47825 * 11 10 9 13 13 C 1.50698 * 120.00201 * 180.23979 * 12 11 10 14 14 F 1.39900 * 109.47070 * 270.28167 * 13 12 11 15 15 F 1.39900 * 109.47156 * 30.27633 * 13 12 11 16 16 F 1.39898 * 109.47473 * 150.27881 * 13 12 11 17 17 C 1.38234 * 120.00000 * 0.52176 * 12 11 10 18 18 C 1.38234 * 119.99503 * 270.01730 * 9 8 6 19 19 N 1.35260 * 107.56698 * 359.64001 * 4 3 2 20 20 C 1.46499 * 126.04836 * 180.22536 * 19 4 3 21 21 C 1.50706 * 109.47223 * 90.00059 * 20 19 4 22 22 H 1.07995 * 119.99554 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00019 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99659 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 120.00207 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47004 * 90.00097 * 25 23 21 27 27 H 1.48496 * 109.46816 * 210.00007 * 25 23 21 28 28 H 1.48496 * 109.46872 * 330.00257 * 25 23 21 29 29 N 1.30850 * 125.83818 * 179.73663 * 2 1 3 30 30 H 1.08998 * 109.47302 * 270.23813 * 1 2 3 31 31 H 1.09002 * 109.46770 * 30.24036 * 1 2 3 32 32 H 1.09003 * 109.46960 * 150.23415 * 1 2 3 33 33 H 1.08000 * 126.08258 * 0.03216 * 3 2 1 34 34 H 0.96998 * 120.00322 * 179.68713 * 5 4 3 35 35 H 1.08988 * 109.47229 * 59.99708 * 8 6 5 36 36 H 1.09000 * 109.46558 * 299.99688 * 8 6 5 37 37 H 1.08002 * 119.99744 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.99577 * 179.72816 * 11 10 9 39 39 H 1.08001 * 120.00310 * 179.72161 * 17 12 11 40 40 H 1.07997 * 120.00460 * 0.02562 * 18 9 8 41 41 H 1.09001 * 109.47119 * 209.99959 * 20 19 4 42 42 H 1.08999 * 109.47082 * 329.99974 * 20 19 4 43 43 H 0.97007 * 119.99865 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6197 0.7121 -0.0031 5 7 4.7513 1.5274 -0.0061 6 6 4.6158 2.8683 -0.0123 7 8 3.5097 3.3660 -0.0158 8 6 5.8385 3.7493 -0.0160 9 6 5.4154 5.1957 -0.0222 10 6 5.2214 5.8642 1.1721 11 6 4.8277 7.1893 1.1663 12 6 4.6386 7.8489 -0.0336 13 6 4.2146 9.2950 -0.0399 14 9 2.8177 9.3715 -0.0398 15 9 4.7166 9.9331 1.0995 16 9 4.7160 9.9231 -1.1851 17 6 4.8326 7.1804 -1.2279 18 6 5.2211 5.8538 -1.2222 19 7 3.6092 -0.6404 0.0031 20 6 4.7870 -1.5116 0.0071 21 6 5.1908 -1.8039 1.4293 22 1 4.6263 -1.3831 2.2482 23 6 6.2803 -2.6093 1.6850 24 7 6.6323 -2.8647 2.9261 25 14 7.2563 -3.3377 0.2685 26 1 8.3479 -2.4055 -0.1115 27 1 7.8389 -4.6382 0.6860 28 1 6.3578 -3.5484 -0.8949 29 7 2.2731 -1.0608 0.0049 30 1 -0.3634 0.0043 1.0276 31 1 -0.3633 0.8879 -0.5176 32 1 -0.3633 -0.8921 -0.5102 33 1 1.9902 2.1596 0.0005 34 1 5.6359 1.1294 -0.0036 35 1 6.4339 3.5407 -0.9048 36 1 6.4333 3.5489 0.8751 37 1 5.3726 5.3498 2.1096 38 1 4.6719 7.7104 2.0994 39 1 4.6804 7.6945 -2.1655 40 1 5.3720 5.3313 -2.1553 41 1 4.5499 -2.4456 -0.5024 42 1 5.6084 -1.0146 -0.5090 43 1 7.3990 -3.4311 3.1060 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = -82.689889 kcal Electronic energy + Delta-G solvation = -31870.591062 eV Core-core repulsion = 26888.639421 eV Total energy + Delta-G solvation = -4981.951641 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.42762 -47.95489 -47.87822 -41.05765 -40.07923 -38.90946 -34.87582 -33.83714 -33.75610 -32.21898 -31.43507 -29.92964 -29.34184 -27.98583 -26.37012 -25.36750 -23.28911 -22.77245 -22.14954 -21.09122 -19.83304 -19.39775 -18.78362 -18.72411 -18.64785 -17.26825 -17.04207 -16.65053 -16.04077 -15.84809 -15.16173 -15.09459 -14.85640 -14.74293 -14.66715 -14.45885 -14.35845 -14.14907 -14.09722 -14.04754 -13.94486 -13.71503 -13.19787 -12.97066 -12.78406 -12.74899 -12.70763 -12.51135 -12.26890 -11.94351 -11.88351 -11.64607 -11.49096 -11.19635 -10.88975 -10.55343 -10.28794 -10.09829 -9.81781 -9.64955 -9.36042 -9.32738 -8.91838 -8.01821 -7.55582 -6.38778 -4.43581 0.56013 0.97644 2.11745 2.38304 2.62528 2.98034 3.01602 3.12262 3.13208 3.20371 3.43439 3.49490 3.65799 3.74135 4.09061 4.15441 4.23589 4.41796 4.52295 4.65502 4.86794 4.87348 4.94720 5.14540 5.19242 5.25063 5.36491 5.55015 5.58913 5.81817 5.84517 5.97830 5.98443 6.06833 6.12531 6.16195 6.24738 6.31177 6.42961 6.58012 6.69316 7.14578 7.37966 7.47053 7.69321 8.09507 8.23063 8.51328 8.67408 9.15709 10.73387 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.002119 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.483608 B =13211.264902 C =14552.895868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.291 4.291 4 C 0.304 3.696 5 N -0.640 5.640 6 C 0.521 3.479 7 O -0.505 6.505 8 C -0.105 4.105 9 C -0.030 4.030 10 C -0.103 4.103 11 C -0.068 4.068 12 C -0.186 4.186 13 C 0.509 3.491 14 F -0.176 7.176 15 F -0.178 7.178 16 F -0.179 7.179 17 C -0.070 4.070 18 C -0.105 4.105 19 N -0.344 5.344 20 C 0.230 3.770 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.080 3.920 24 N -0.882 5.882 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.278 1.278 28 H -0.263 1.263 29 N -0.282 5.282 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.163 0.837 34 H 0.416 0.584 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 21.258 -8.143 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.323 4.323 4 C 0.082 3.918 5 N -0.288 5.288 6 C 0.307 3.693 7 O -0.378 6.378 8 C -0.145 4.145 9 C -0.031 4.031 10 C -0.121 4.121 11 C -0.086 4.086 12 C -0.187 4.187 13 C 0.455 3.545 14 F -0.158 7.158 15 F -0.160 7.160 16 F -0.160 7.160 17 C -0.088 4.088 18 C -0.123 4.123 19 N -0.129 5.129 20 C 0.111 3.889 21 C -0.584 4.584 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.519 5.519 25 Si 0.697 3.303 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.188 1.188 29 N -0.107 5.107 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.180 0.820 34 H 0.252 0.748 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.536 20.227 -8.017 21.765 hybrid contribution 1.206 0.261 -0.435 1.308 sum 0.669 20.488 -8.453 22.173 Atomic orbital electron populations 1.20039 0.87407 1.02396 1.02350 1.22065 0.96604 0.90976 1.01381 1.21282 0.88992 1.00517 1.21536 1.17902 0.88104 0.83068 1.02737 1.42774 1.08222 1.05611 1.72152 1.20356 0.91227 0.81189 0.76552 1.90685 1.26628 1.73578 1.46905 1.20730 0.96441 0.90591 1.06743 1.19499 0.96112 0.93868 0.93572 1.21052 0.98951 0.93804 0.98299 1.20889 0.96142 0.94797 0.96810 1.19941 1.09919 0.92230 0.96652 1.18329 0.75071 0.87656 0.73469 1.93238 1.29498 1.96896 1.96124 1.93187 1.87301 1.84101 1.51376 1.93182 1.87333 1.84533 1.50966 1.20868 0.96342 0.94709 0.96846 1.20999 0.99332 0.93858 0.98062 1.48903 1.06215 1.02008 1.55751 1.19935 0.79242 0.90070 0.99690 1.21186 1.14243 1.32717 0.90286 0.90075 1.24825 0.96648 0.95190 0.95789 1.69871 1.26800 1.36654 1.18559 0.86922 0.80740 0.79809 0.82803 1.19644 1.20332 1.18759 1.77374 0.85777 1.21743 1.25819 0.91127 0.91060 0.91485 0.81980 0.74782 0.86895 0.86600 0.84578 0.84622 0.84692 0.84769 0.92744 0.94750 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.07 7.21 -82.44 -0.59 0.47 16 3 C -0.29 -5.71 9.58 -39.78 -0.38 -6.09 16 4 C 0.30 6.00 7.66 -153.16 -1.17 4.83 16 5 N -0.64 -9.92 5.42 -11.46 -0.06 -9.98 16 6 C 0.52 7.03 7.79 -10.98 -0.09 6.94 16 7 O -0.50 -8.35 13.16 5.54 0.07 -8.27 16 8 C -0.11 -0.90 5.83 -29.03 -0.17 -1.07 16 9 C -0.03 -0.28 4.37 -104.62 -0.46 -0.74 16 10 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 11 C -0.07 -0.63 9.40 -39.58 -0.37 -1.00 16 12 C -0.19 -1.77 5.45 -104.63 -0.57 -2.34 16 13 C 0.51 4.86 3.36 36.00 0.12 4.98 16 14 F -0.18 -1.86 17.30 2.25 0.04 -1.82 16 15 F -0.18 -1.71 16.47 2.25 0.04 -1.67 16 16 F -0.18 -1.69 16.46 2.25 0.04 -1.65 16 17 C -0.07 -0.61 9.40 -39.58 -0.37 -0.99 16 18 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 19 N -0.34 -7.62 3.60 -61.57 -0.22 -7.85 16 20 C 0.23 5.20 5.07 -5.19 -0.03 5.17 16 21 C -0.55 -14.49 9.94 -34.44 -0.34 -14.83 16 22 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 23 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 24 N -0.88 -25.08 13.96 55.43 0.77 -24.31 16 25 Si 0.87 18.92 27.47 -169.99 -4.67 14.25 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 29 N -0.28 -6.34 12.56 33.65 0.42 -5.91 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.16 3.10 5.83 -52.49 -0.31 2.79 16 34 H 0.42 5.65 7.96 -40.82 -0.33 5.33 16 35 H 0.11 0.66 8.09 -51.94 -0.42 0.24 16 36 H 0.12 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 1.03 7.61 -52.48 -0.40 0.63 16 39 H 0.14 0.96 7.60 -52.49 -0.40 0.56 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 42 H 0.03 0.69 6.93 -51.93 -0.36 0.33 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -33.27 383.76 -7.41 -40.68 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.71 Total: 6.57 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.91 Total: -5.81 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.91 Total: -48.05 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.07 Total: -8.27 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.67 Total: 14.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.27 -7.41 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.009 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds