Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39759 * 125.84043 * 2 1 4 4 C 1.36106 * 107.82934 * 180.13854 * 3 2 1 5 5 N 1.39472 * 126.21886 * 179.90505 * 4 3 2 6 6 C 1.34774 * 119.99702 * 359.68849 * 5 4 3 7 7 O 1.21296 * 120.00278 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00014 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.46982 * 180.02562 * 8 6 5 10 10 C 1.38234 * 120.00257 * 90.00130 * 9 8 6 11 11 C 1.38238 * 119.99675 * 180.27927 * 10 9 8 12 12 C 1.38228 * 120.00120 * 359.47825 * 11 10 9 13 13 C 1.50698 * 120.00201 * 180.23979 * 12 11 10 14 14 F 1.39900 * 109.47070 * 270.28167 * 13 12 11 15 15 F 1.39900 * 109.47156 * 30.27633 * 13 12 11 16 16 F 1.39898 * 109.47473 * 150.27881 * 13 12 11 17 17 C 1.38234 * 120.00000 * 0.52176 * 12 11 10 18 18 C 1.38234 * 119.99503 * 270.01730 * 9 8 6 19 19 N 1.35260 * 107.56698 * 359.64001 * 4 3 2 20 20 C 1.46499 * 126.04836 * 180.22536 * 19 4 3 21 21 C 1.50706 * 109.47223 * 90.00059 * 20 19 4 22 22 H 1.07995 * 119.99554 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00019 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99659 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 120.00207 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47004 * 90.00097 * 25 23 21 27 27 H 1.48496 * 109.46816 * 210.00007 * 25 23 21 28 28 H 1.48496 * 109.46872 * 330.00257 * 25 23 21 29 29 N 1.30850 * 125.83818 * 179.73663 * 2 1 3 30 30 H 1.08998 * 109.47302 * 270.23813 * 1 2 3 31 31 H 1.09002 * 109.46770 * 30.24036 * 1 2 3 32 32 H 1.09003 * 109.46960 * 150.23415 * 1 2 3 33 33 H 1.08000 * 126.08258 * 0.03216 * 3 2 1 34 34 H 0.96998 * 120.00322 * 179.68713 * 5 4 3 35 35 H 1.08988 * 109.47229 * 59.99708 * 8 6 5 36 36 H 1.09000 * 109.46558 * 299.99688 * 8 6 5 37 37 H 1.08002 * 119.99744 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.99577 * 179.72816 * 11 10 9 39 39 H 1.08001 * 120.00310 * 179.72161 * 17 12 11 40 40 H 1.07997 * 120.00460 * 0.02562 * 18 9 8 41 41 H 1.09001 * 109.47119 * 209.99959 * 20 19 4 42 42 H 1.08999 * 109.47082 * 329.99974 * 20 19 4 43 43 H 0.97007 * 119.99865 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6197 0.7121 -0.0031 5 7 4.7513 1.5274 -0.0061 6 6 4.6158 2.8683 -0.0123 7 8 3.5097 3.3660 -0.0158 8 6 5.8385 3.7493 -0.0160 9 6 5.4154 5.1957 -0.0222 10 6 5.2214 5.8642 1.1721 11 6 4.8277 7.1893 1.1663 12 6 4.6386 7.8489 -0.0336 13 6 4.2146 9.2950 -0.0399 14 9 2.8177 9.3715 -0.0398 15 9 4.7166 9.9331 1.0995 16 9 4.7160 9.9231 -1.1851 17 6 4.8326 7.1804 -1.2279 18 6 5.2211 5.8538 -1.2222 19 7 3.6092 -0.6404 0.0031 20 6 4.7870 -1.5116 0.0071 21 6 5.1908 -1.8039 1.4293 22 1 4.6263 -1.3831 2.2482 23 6 6.2803 -2.6093 1.6850 24 7 6.6323 -2.8647 2.9261 25 14 7.2563 -3.3377 0.2685 26 1 8.3479 -2.4055 -0.1115 27 1 7.8389 -4.6382 0.6860 28 1 6.3578 -3.5484 -0.8949 29 7 2.2731 -1.0608 0.0049 30 1 -0.3634 0.0043 1.0276 31 1 -0.3633 0.8879 -0.5176 32 1 -0.3633 -0.8921 -0.5102 33 1 1.9902 2.1596 0.0005 34 1 5.6359 1.1294 -0.0036 35 1 6.4339 3.5407 -0.9048 36 1 6.4333 3.5489 0.8751 37 1 5.3726 5.3498 2.1096 38 1 4.6719 7.7104 2.0994 39 1 4.6804 7.6945 -2.1655 40 1 5.3720 5.3313 -2.1553 41 1 4.5499 -2.4456 -0.5024 42 1 5.6084 -1.0146 -0.5090 43 1 7.3990 -3.4311 3.1060 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058289355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = -102.029124 kcal Electronic energy + Delta-G solvation = -31871.429674 eV Core-core repulsion = 26888.639421 eV Total energy + Delta-G solvation = -4982.790254 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.19228 -48.70714 -48.66453 -42.45652 -41.03701 -39.89677 -36.26810 -35.53675 -34.52523 -33.97288 -32.08805 -31.26006 -30.58418 -29.21341 -28.01032 -26.18497 -24.40486 -23.95006 -23.30902 -22.07631 -21.23334 -20.70184 -19.53260 -19.46206 -19.40030 -19.25195 -18.48889 -17.81149 -16.96776 -16.82254 -16.44113 -16.20251 -15.93237 -15.69318 -15.51080 -15.50178 -15.29560 -15.24879 -15.11901 -14.90640 -14.84432 -14.82249 -14.38999 -14.37395 -14.15511 -13.82014 -13.71214 -13.49762 -13.48217 -13.20341 -13.08522 -12.87719 -12.52763 -12.34113 -12.13804 -12.09626 -11.85648 -11.75140 -11.48767 -10.95683 -10.90170 -10.05904 -10.02146 -9.61236 -9.06437 -8.41421 -6.54204 -0.14674 0.31506 0.79181 1.31703 1.34039 1.41636 1.49329 1.64072 1.64532 2.06152 2.17367 2.25984 2.54261 2.70530 2.90306 3.01008 3.39828 3.50760 3.72661 3.78734 3.79260 3.90332 4.22314 4.25069 4.31561 4.46547 4.54941 4.56364 4.60171 4.68823 4.72547 4.87045 4.91221 4.94751 4.96131 5.13390 5.16032 5.17869 5.20056 5.23375 5.45582 5.77651 5.87446 5.99515 6.23187 6.35733 6.50537 6.94927 7.03727 7.11236 8.74929 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.002119 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.483608 B =13211.264902 C =14552.895868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.059 3.941 3 C -0.308 4.308 4 C 0.305 3.695 5 N -0.639 5.639 6 C 0.521 3.479 7 O -0.536 6.536 8 C -0.094 4.094 9 C -0.042 4.042 10 C -0.114 4.114 11 C -0.078 4.078 12 C -0.196 4.196 13 C 0.511 3.489 14 F -0.184 7.184 15 F -0.180 7.180 16 F -0.178 7.178 17 C -0.076 4.076 18 C -0.108 4.108 19 N -0.367 5.367 20 C 0.238 3.762 21 C -0.553 4.553 22 H 0.022 0.978 23 C 0.025 3.975 24 N -0.935 5.935 25 Si 0.949 3.051 26 H -0.241 1.241 27 H -0.283 1.283 28 H -0.248 1.248 29 N -0.331 5.331 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.425 0.575 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 21.971 -10.371 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C -0.339 4.339 4 C 0.082 3.918 5 N -0.288 5.288 6 C 0.310 3.690 7 O -0.410 6.410 8 C -0.133 4.133 9 C -0.042 4.042 10 C -0.131 4.131 11 C -0.096 4.096 12 C -0.198 4.198 13 C 0.457 3.543 14 F -0.165 7.165 15 F -0.161 7.161 16 F -0.159 7.159 17 C -0.094 4.094 18 C -0.125 4.125 19 N -0.152 5.152 20 C 0.118 3.882 21 C -0.591 4.591 22 H 0.040 0.960 23 C -0.176 4.176 24 N -0.573 5.573 25 Si 0.770 3.230 26 H -0.165 1.165 27 H -0.208 1.208 28 H -0.172 1.172 29 N -0.156 5.156 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.185 0.815 34 H 0.263 0.737 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.757 20.981 -10.252 23.364 hybrid contribution 0.699 0.162 0.359 0.802 sum 1.455 21.144 -9.893 23.389 Atomic orbital electron populations 1.20225 0.84148 1.04125 1.03542 1.22871 0.98684 0.90229 0.98881 1.21474 0.89263 1.00713 1.22493 1.18298 0.89753 0.82665 1.01061 1.43013 1.07441 1.06025 1.72295 1.21329 0.92448 0.80512 0.74711 1.90665 1.28482 1.73827 1.48069 1.20813 0.94240 0.88717 1.09511 1.19668 0.96498 0.94262 0.93800 1.21270 0.98949 0.93981 0.98947 1.21073 0.96206 0.95046 0.97256 1.20055 1.10367 0.92128 0.97217 1.18350 0.74671 0.87862 0.73406 1.93221 1.30201 1.96948 1.96164 1.93182 1.87266 1.84172 1.51476 1.93180 1.87268 1.84565 1.50918 1.21120 0.96030 0.95019 0.97230 1.21288 0.98619 0.93864 0.98763 1.48824 1.06044 1.02834 1.57481 1.19759 0.80585 0.90732 0.97087 1.21208 1.13968 1.32934 0.90955 0.96009 1.25827 0.97643 0.95140 0.98943 1.70037 1.27850 1.37831 1.21549 0.85706 0.79563 0.78903 0.78827 1.16457 1.20816 1.17173 1.77307 0.86401 1.23513 1.28338 0.90058 0.88569 0.90503 0.81549 0.73730 0.83315 0.84482 0.83734 0.83701 0.83246 0.82772 0.93255 0.91142 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.44 71.24 0.74 -0.97 16 2 C 0.06 2.28 7.21 43.07 0.31 2.59 16 3 C -0.31 -12.00 9.58 22.14 0.21 -11.79 16 4 C 0.30 11.96 7.66 131.32 1.01 12.97 16 5 N -0.64 -18.91 5.42 -308.56 -1.67 -20.59 16 6 C 0.52 13.12 7.79 87.66 0.68 13.80 16 7 O -0.54 -17.13 13.16 -3.08 -0.04 -17.17 16 8 C -0.09 -1.32 5.83 29.10 0.17 -1.15 16 9 C -0.04 -0.69 4.37 -19.87 -0.09 -0.77 16 10 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 11 C -0.08 -1.35 9.40 22.27 0.21 -1.14 16 12 C -0.20 -3.52 5.45 -19.87 -0.11 -3.63 16 13 C 0.51 9.36 3.36 71.24 0.24 9.59 16 14 F -0.18 -3.79 17.30 44.97 0.78 -3.01 16 15 F -0.18 -3.33 16.47 44.97 0.74 -2.59 16 16 F -0.18 -3.18 16.46 44.97 0.74 -2.44 16 17 C -0.08 -1.21 9.40 22.27 0.21 -1.00 16 18 C -0.11 -1.63 9.70 22.27 0.22 -1.41 16 19 N -0.37 -16.36 3.60 -348.71 -1.26 -17.62 16 20 C 0.24 10.65 5.07 85.64 0.43 11.08 16 21 C -0.55 -30.04 9.94 25.60 0.25 -29.79 16 22 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 23 C 0.02 1.32 5.47 84.65 0.46 1.78 16 24 N -0.93 -54.42 13.96 21.44 0.30 -54.12 16 25 Si 0.95 37.94 27.47 68.60 1.88 39.82 16 26 H -0.24 -8.49 7.11 99.48 0.71 -7.78 16 27 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 28 H -0.25 -9.27 6.54 99.48 0.65 -8.62 16 29 N -0.33 -15.08 12.56 -47.45 -0.60 -15.67 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.17 6.31 5.83 -2.91 -0.02 6.29 16 34 H 0.42 10.69 7.96 -92.71 -0.74 9.96 16 35 H 0.15 1.08 8.09 -2.39 -0.02 1.06 16 36 H 0.14 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.15 2.10 7.61 -2.91 -0.02 2.08 16 39 H 0.15 1.84 7.60 -2.91 -0.02 1.81 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.05 2.25 7.20 -2.39 -0.02 2.23 16 42 H 0.07 2.62 6.93 -2.39 -0.02 2.61 16 43 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -75.90 383.76 6.34 -69.55 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.29 Total: 25.39 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.17 Total: -1.57 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.22 Total: -107.99 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.04 Total: -17.17 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.26 Total: -8.04 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.88 Total: 39.82 kcal Total: -75.90 6.34 -69.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.476 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds