Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46892 * 111.00070 * 2 1 4 4 C 1.50703 * 109.47409 * 66.04553 * 3 2 1 5 5 C 1.38220 * 120.01366 * 104.99729 * 4 3 2 6 6 C 1.38224 * 120.02670 * 180.02562 * 5 4 3 7 7 C 1.38261 * 120.05053 * 359.97438 * 6 5 4 8 8 C 1.38180 * 120.02492 * 359.97438 * 7 6 5 9 9 C 1.38431 * 120.01204 * 285.00473 * 4 3 2 10 10 F 1.35103 * 120.02705 * 359.97438 * 9 4 3 11 11 C 1.46898 * 110.99827 * 236.04537 * 2 1 3 12 12 C 1.50697 * 109.47320 * 293.95429 * 11 2 1 13 13 N 1.29827 * 118.35000 * 359.73294 * 12 11 2 14 14 C 1.35639 * 121.62708 * 179.76332 * 13 12 11 15 15 C 1.39627 * 121.62293 * 180.27544 * 14 13 12 16 16 C 1.37712 * 119.69455 * 180.19838 * 15 14 13 17 17 C 1.38878 * 120.82617 * 359.97438 * 16 15 14 18 18 C 1.37798 * 120.56921 * 0.02562 * 17 16 15 19 19 C 1.39376 * 119.51608 * 359.97438 * 18 17 16 20 20 C 1.46956 * 121.90164 * 180.02562 * 19 18 17 21 21 O 1.21719 * 121.29329 * 359.97438 * 20 19 18 22 22 N 1.35344 * 117.42438 * 179.97438 * 20 19 18 23 23 C 1.37107 * 119.71987 * 179.97438 * 22 20 19 24 24 H 1.07994 * 119.99875 * 138.86517 * 23 22 20 25 25 C 1.39071 * 119.99471 * 318.86927 * 23 22 20 26 26 N 1.31258 * 120.00703 * 340.40338 * 25 23 22 27 27 Si 1.86806 * 119.99975 * 160.40611 * 25 23 22 28 28 H 1.48503 * 109.46650 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47206 * 119.99211 * 27 25 23 30 30 H 1.48494 * 109.47439 * 239.99957 * 27 25 23 31 31 H 1.09003 * 109.46950 * 59.99704 * 1 2 3 32 32 H 1.09003 * 109.47258 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47289 * 299.99897 * 1 2 3 34 34 H 1.09002 * 109.47356 * 306.04613 * 3 2 1 35 35 H 1.09003 * 109.47541 * 186.04483 * 3 2 1 36 36 H 1.08003 * 119.98326 * 359.97438 * 5 4 3 37 37 H 1.07998 * 119.97062 * 179.97438 * 6 5 4 38 38 H 1.08000 * 119.98984 * 180.02562 * 7 6 5 39 39 H 1.08003 * 120.00754 * 179.74887 * 8 7 6 40 40 H 1.09005 * 109.47222 * 53.95447 * 11 2 1 41 41 H 1.09004 * 109.47059 * 173.95188 * 11 2 1 42 42 H 1.07997 * 120.15365 * 0.18132 * 15 14 13 43 43 H 1.07999 * 119.59386 * 179.97438 * 16 15 14 44 44 H 1.07997 * 119.71637 * 180.02562 * 17 16 15 45 45 H 1.07999 * 120.23926 * 180.02562 * 18 17 16 46 46 H 0.96997 * 120.00357 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.6026 2.2361 2.2692 6 6 2.2740 2.8554 3.4604 7 6 0.9793 3.2870 3.6822 8 6 0.0125 3.1001 2.7128 9 6 0.3403 2.4787 1.5195 10 9 -0.6043 2.2949 0.5712 11 6 1.9954 -0.7660 -1.1376 12 6 1.6369 -2.2204 -0.9729 13 7 0.9644 -2.5742 0.0798 14 6 0.6025 -3.8640 0.2923 15 6 -0.1257 -4.2435 1.4216 16 6 -0.4686 -5.5653 1.5998 17 6 -0.0997 -6.5279 0.6692 18 6 0.6190 -6.1783 -0.4533 19 6 0.9762 -4.8459 -0.6526 20 6 1.7415 -4.4150 -1.8308 21 8 2.0944 -5.2110 -2.6814 22 7 2.0389 -3.0986 -1.9337 23 6 2.7516 -2.6451 -3.0136 24 1 2.4766 -1.7160 -3.4905 25 6 3.8286 -3.3817 -3.4949 26 7 4.4069 -4.2764 -2.7282 27 14 4.4523 -3.0978 -5.2327 28 1 3.6350 -2.0439 -5.8858 29 1 5.8720 -2.6651 -5.1846 30 1 4.3452 -4.3589 -6.0094 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.5611 1.9273 -0.8309 35 1 3.0798 1.3444 -0.1082 36 1 3.6141 1.8990 2.0971 37 1 3.0291 3.0022 4.2184 38 1 0.7237 3.7712 4.6132 39 1 -0.9996 3.4338 2.8880 40 1 1.5611 -0.3872 -2.0628 41 1 3.0797 -0.6611 -1.1756 42 1 -0.4183 -3.5039 2.1522 43 1 -1.0315 -5.8571 2.4741 44 1 -0.3786 -7.5593 0.8266 45 1 0.9027 -6.9312 -1.1738 46 1 5.1583 -4.7899 -3.0637 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058329035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = 33.568493 kcal Electronic energy + Delta-G solvation = -33138.682210 eV Core-core repulsion = 28716.001440 eV Total energy + Delta-G solvation = -4422.680770 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.144 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.08800 -40.48110 -39.22062 -37.66541 -37.21341 -35.70164 -33.75479 -31.99317 -31.85890 -30.58361 -30.33506 -29.26339 -27.30076 -26.66279 -25.77899 -23.69327 -22.89254 -22.73921 -21.56184 -21.02925 -20.35199 -18.74354 -17.86103 -17.61880 -16.92729 -16.49876 -16.37415 -15.90847 -15.60003 -15.09086 -14.76822 -14.63933 -14.48377 -14.17830 -14.10598 -13.85266 -13.77036 -13.60916 -13.30882 -12.97905 -12.85795 -12.53085 -12.36795 -12.24307 -12.06197 -11.88472 -11.79264 -11.41683 -11.32655 -11.17800 -11.10197 -11.00096 -10.95712 -10.72356 -10.56359 -10.47303 -9.50718 -9.07306 -8.91050 -8.75704 -8.68030 -8.34024 -8.32007 -7.90844 -7.01416 -6.67635 -4.52393 1.08464 1.14311 1.53160 1.69849 3.03226 3.12253 3.15971 3.26297 3.45755 3.75454 3.94262 4.12455 4.22214 4.55914 4.62518 4.70013 4.71534 4.84932 4.92733 5.12720 5.15897 5.22538 5.38539 5.46652 5.50699 5.55501 5.59807 5.76152 5.81259 5.83152 5.89427 5.98200 6.00641 6.06756 6.08101 6.15283 6.22813 6.26878 6.36928 6.47359 6.65081 6.76965 6.82061 6.84207 7.05063 7.09227 7.17076 7.31982 7.43394 7.53673 7.62549 8.13622 8.48050 8.73413 9.21652 9.53041 10.33441 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.003460 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.735500 B = 8091.494133 C =10382.672870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.512 5.512 3 C 0.090 3.910 4 C -0.097 4.097 5 C -0.075 4.075 6 C -0.131 4.131 7 C -0.098 4.098 8 C -0.157 4.157 9 C 0.104 3.896 10 F -0.134 7.134 11 C 0.124 3.876 12 C 0.364 3.636 13 N -0.543 5.543 14 C 0.167 3.833 15 C -0.130 4.130 16 C -0.091 4.091 17 C -0.177 4.177 18 C -0.039 4.039 19 C -0.209 4.209 20 C 0.520 3.480 21 O -0.503 6.503 22 N -0.352 5.352 23 C -0.386 4.386 24 H 0.107 0.893 25 C 0.080 3.920 26 N -0.798 5.798 27 Si 0.927 3.073 28 H -0.263 1.263 29 H -0.277 1.277 30 H -0.273 1.273 31 H 0.014 0.986 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 12.516 9.882 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.235 5.235 3 C -0.037 4.037 4 C -0.098 4.098 5 C -0.094 4.094 6 C -0.149 4.149 7 C -0.116 4.116 8 C -0.176 4.176 9 C 0.084 3.916 10 F -0.112 7.112 11 C -0.005 4.005 12 C 0.101 3.899 13 N -0.270 5.270 14 C 0.051 3.949 15 C -0.150 4.150 16 C -0.110 4.110 17 C -0.196 4.196 18 C -0.058 4.058 19 C -0.217 4.217 20 C 0.314 3.686 21 O -0.377 6.377 22 N -0.055 5.055 23 C -0.512 4.512 24 H 0.124 0.876 25 C -0.137 4.137 26 N -0.425 5.425 27 Si 0.751 3.249 28 H -0.187 1.187 29 H -0.202 1.202 30 H -0.199 1.199 31 H 0.032 0.968 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.075 0.925 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.530 12.033 10.285 16.465 hybrid contribution 0.154 -0.392 -2.133 2.174 sum -4.376 11.641 8.152 14.870 Atomic orbital electron populations 1.23053 0.86525 1.04259 0.99769 1.61742 1.09030 1.10168 1.42599 1.21014 1.01039 0.89080 0.92587 1.19851 0.92103 0.99727 0.98115 1.20980 0.99358 0.96743 0.92295 1.21188 0.96697 0.99499 0.97562 1.20959 0.92818 0.99275 0.98554 1.21102 1.01004 1.02268 0.93178 1.17542 0.86042 1.00652 0.87350 1.91485 1.63761 1.92795 1.63180 1.20761 1.01360 0.86830 0.91520 1.22629 0.91241 0.92987 0.83078 1.68484 1.23168 1.16032 1.19332 1.18859 0.94273 0.88548 0.93259 1.20592 1.01299 0.95779 0.97336 1.20965 0.98839 0.92867 0.98362 1.20827 1.03656 0.99004 0.96111 1.20879 0.94106 0.94584 0.96269 1.20853 1.07041 0.95668 0.98172 1.18187 0.81226 0.82494 0.86662 1.90663 1.52506 1.51805 1.42700 1.42265 1.38952 1.06989 1.17342 1.19604 1.12173 1.11281 1.08160 0.87560 1.25394 0.94416 0.94528 0.99396 1.69818 1.17806 1.19044 1.35875 0.85912 0.78328 0.79056 0.81599 1.18716 1.20245 1.19871 0.96756 0.88904 0.91110 0.93794 0.89306 0.84885 0.85506 0.85393 0.85060 0.92534 0.87622 0.85786 0.86577 0.86690 0.85973 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 7.58 60.07 0.46 0.64 16 2 N -0.51 -8.35 4.41 -245.82 -1.08 -9.44 16 3 C 0.09 1.19 5.04 -4.98 -0.03 1.17 16 4 C -0.10 -1.19 5.28 -104.56 -0.55 -1.75 16 5 C -0.08 -0.80 9.67 -39.59 -0.38 -1.18 16 6 C -0.13 -1.19 10.04 -39.58 -0.40 -1.59 16 7 C -0.10 -0.86 10.04 -39.59 -0.40 -1.25 16 8 C -0.16 -1.59 10.03 -39.51 -0.40 -1.99 16 9 C 0.10 1.28 5.93 -39.42 -0.23 1.05 16 10 F -0.13 -1.80 13.19 2.25 0.03 -1.77 16 11 C 0.12 2.26 4.08 -4.98 -0.02 2.24 16 12 C 0.36 8.10 7.19 -154.87 -1.11 6.99 16 13 N -0.54 -11.84 7.10 -8.10 -0.06 -11.90 16 14 C 0.17 3.67 6.63 -84.50 -0.56 3.11 16 15 C -0.13 -2.40 10.03 -39.26 -0.39 -2.80 16 16 C -0.09 -1.48 10.00 -39.54 -0.40 -1.87 16 17 C -0.18 -3.05 10.02 -39.51 -0.40 -3.44 16 18 C -0.04 -0.81 9.68 -39.32 -0.38 -1.20 16 19 C -0.21 -5.00 5.89 -104.78 -0.62 -5.61 16 20 C 0.52 14.05 6.93 -12.47 -0.09 13.96 16 21 O -0.50 -14.85 14.28 5.17 0.07 -14.78 16 22 N -0.35 -8.94 2.68 -59.57 -0.16 -9.10 16 23 C -0.39 -9.69 8.24 -14.88 -0.12 -9.81 16 24 H 0.11 2.43 7.07 -52.49 -0.37 2.06 16 25 C 0.08 2.05 4.36 -17.49 -0.08 1.97 16 26 N -0.80 -22.06 11.54 55.50 0.64 -21.42 16 27 Si 0.93 19.62 29.60 -169.99 -5.03 14.59 16 28 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 29 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 30 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 31 H 0.01 0.22 7.74 -51.93 -0.40 -0.18 16 32 H 0.09 1.72 5.61 -51.93 -0.29 1.43 16 33 H 0.07 1.11 4.61 -51.93 -0.24 0.87 16 34 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 35 H 0.09 1.05 7.74 -51.93 -0.40 0.64 16 36 H 0.13 1.23 8.00 -52.48 -0.42 0.81 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.06 0.98 7.56 -51.93 -0.39 0.59 16 41 H 0.11 1.89 7.83 -51.93 -0.41 1.48 16 42 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.12 2.54 7.83 -52.49 -0.41 2.13 16 46 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -31.59 379.50 -11.39 -42.98 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.43 Total: 6.48 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -6.09 Total: -1.36 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.66 Total: -51.85 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.07 Total: -14.78 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.59 -11.39 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058329035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.549 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds