Wall clock time and date at job start Tue Mar 31 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46892 * 111.00070 * 2 1 4 4 C 1.50703 * 109.47409 * 66.04553 * 3 2 1 5 5 C 1.38220 * 120.01366 * 104.99729 * 4 3 2 6 6 C 1.38224 * 120.02670 * 180.02562 * 5 4 3 7 7 C 1.38261 * 120.05053 * 359.97438 * 6 5 4 8 8 C 1.38180 * 120.02492 * 359.97438 * 7 6 5 9 9 C 1.38431 * 120.01204 * 285.00473 * 4 3 2 10 10 F 1.35103 * 120.02705 * 359.97438 * 9 4 3 11 11 C 1.46898 * 110.99827 * 236.04537 * 2 1 3 12 12 C 1.50697 * 109.47320 * 293.95429 * 11 2 1 13 13 N 1.29827 * 118.35000 * 359.73294 * 12 11 2 14 14 C 1.35639 * 121.62708 * 179.76332 * 13 12 11 15 15 C 1.39627 * 121.62293 * 180.27544 * 14 13 12 16 16 C 1.37712 * 119.69455 * 180.19838 * 15 14 13 17 17 C 1.38878 * 120.82617 * 359.97438 * 16 15 14 18 18 C 1.37798 * 120.56921 * 0.02562 * 17 16 15 19 19 C 1.39376 * 119.51608 * 359.97438 * 18 17 16 20 20 C 1.46956 * 121.90164 * 180.02562 * 19 18 17 21 21 O 1.21719 * 121.29329 * 359.97438 * 20 19 18 22 22 N 1.35344 * 117.42438 * 179.97438 * 20 19 18 23 23 C 1.37107 * 119.71987 * 179.97438 * 22 20 19 24 24 H 1.07994 * 119.99875 * 138.86517 * 23 22 20 25 25 C 1.39071 * 119.99471 * 318.86927 * 23 22 20 26 26 N 1.31258 * 120.00703 * 340.40338 * 25 23 22 27 27 Si 1.86806 * 119.99975 * 160.40611 * 25 23 22 28 28 H 1.48503 * 109.46650 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47206 * 119.99211 * 27 25 23 30 30 H 1.48494 * 109.47439 * 239.99957 * 27 25 23 31 31 H 1.09003 * 109.46950 * 59.99704 * 1 2 3 32 32 H 1.09003 * 109.47258 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47289 * 299.99897 * 1 2 3 34 34 H 1.09002 * 109.47356 * 306.04613 * 3 2 1 35 35 H 1.09003 * 109.47541 * 186.04483 * 3 2 1 36 36 H 1.08003 * 119.98326 * 359.97438 * 5 4 3 37 37 H 1.07998 * 119.97062 * 179.97438 * 6 5 4 38 38 H 1.08000 * 119.98984 * 180.02562 * 7 6 5 39 39 H 1.08003 * 120.00754 * 179.74887 * 8 7 6 40 40 H 1.09005 * 109.47222 * 53.95447 * 11 2 1 41 41 H 1.09004 * 109.47059 * 173.95188 * 11 2 1 42 42 H 1.07997 * 120.15365 * 0.18132 * 15 14 13 43 43 H 1.07999 * 119.59386 * 179.97438 * 16 15 14 44 44 H 1.07997 * 119.71637 * 180.02562 * 17 16 15 45 45 H 1.07999 * 120.23926 * 180.02562 * 18 17 16 46 46 H 0.96997 * 120.00357 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 6 2.6026 2.2361 2.2692 6 6 2.2740 2.8554 3.4604 7 6 0.9793 3.2870 3.6822 8 6 0.0125 3.1001 2.7128 9 6 0.3403 2.4787 1.5195 10 9 -0.6043 2.2949 0.5712 11 6 1.9954 -0.7660 -1.1376 12 6 1.6369 -2.2204 -0.9729 13 7 0.9644 -2.5742 0.0798 14 6 0.6025 -3.8640 0.2923 15 6 -0.1257 -4.2435 1.4216 16 6 -0.4686 -5.5653 1.5998 17 6 -0.0997 -6.5279 0.6692 18 6 0.6190 -6.1783 -0.4533 19 6 0.9762 -4.8459 -0.6526 20 6 1.7415 -4.4150 -1.8308 21 8 2.0944 -5.2110 -2.6814 22 7 2.0389 -3.0986 -1.9337 23 6 2.7516 -2.6451 -3.0136 24 1 2.4766 -1.7160 -3.4905 25 6 3.8286 -3.3817 -3.4949 26 7 4.4069 -4.2764 -2.7282 27 14 4.4523 -3.0978 -5.2327 28 1 3.6350 -2.0439 -5.8858 29 1 5.8720 -2.6651 -5.1846 30 1 4.3452 -4.3589 -6.0094 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.5611 1.9273 -0.8309 35 1 3.0798 1.3444 -0.1082 36 1 3.6141 1.8990 2.0971 37 1 3.0291 3.0022 4.2184 38 1 0.7237 3.7712 4.6132 39 1 -0.9996 3.4338 2.8880 40 1 1.5611 -0.3872 -2.0628 41 1 3.0797 -0.6611 -1.1756 42 1 -0.4183 -3.5039 2.1522 43 1 -1.0315 -5.8571 2.4741 44 1 -0.3786 -7.5593 0.8266 45 1 0.9027 -6.9312 -1.1738 46 1 5.1583 -4.7899 -3.0637 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058329035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:07 Heat of formation + Delta-G solvation = 16.446926 kcal Electronic energy + Delta-G solvation = -33139.424657 eV Core-core repulsion = 28716.001440 eV Total energy + Delta-G solvation = -4423.423217 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.144 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.02860 -42.23457 -40.09113 -39.23486 -38.75421 -37.27549 -35.53861 -33.72609 -32.96916 -31.93968 -31.38866 -30.73522 -28.73912 -27.81933 -27.60580 -25.07333 -24.50291 -23.55858 -22.92550 -22.49387 -21.61102 -20.51941 -19.52836 -18.68386 -18.38753 -17.60983 -17.47369 -17.29879 -16.82150 -16.65865 -16.32495 -16.11462 -15.76888 -15.56932 -15.47302 -15.32224 -15.11631 -14.81838 -14.61702 -14.23883 -14.19824 -13.88782 -13.74889 -13.68306 -13.58722 -13.19105 -13.01635 -12.94898 -12.74825 -12.62415 -12.52316 -12.34110 -12.19533 -12.10661 -12.02569 -11.79086 -11.27478 -10.79914 -10.44982 -10.19751 -9.91613 -9.86515 -9.57843 -9.17170 -8.78489 -8.52635 -6.48231 -0.10063 0.08769 0.27917 0.37266 1.32789 1.40192 1.50920 1.53650 2.00281 2.25735 2.41730 2.72957 2.88683 3.20132 3.28223 3.39131 3.41072 3.74681 3.81367 3.87560 3.95157 4.13227 4.16876 4.23442 4.33828 4.37635 4.47793 4.48884 4.54156 4.59874 4.60251 4.65020 4.77745 4.80183 4.96768 5.03878 5.14755 5.17306 5.21507 5.29577 5.33532 5.37086 5.51523 5.55903 5.57393 5.59056 5.78364 5.95166 6.03554 6.07622 6.15604 6.32288 6.61807 6.85557 7.42089 7.63533 8.46292 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.003460 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.735500 B = 8091.494133 C =10382.672870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.518 5.518 3 C 0.092 3.908 4 C -0.116 4.116 5 C -0.085 4.085 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.161 4.161 9 C 0.078 3.922 10 F -0.147 7.147 11 C 0.133 3.867 12 C 0.352 3.648 13 N -0.530 5.530 14 C 0.136 3.864 15 C -0.126 4.126 16 C -0.072 4.072 17 C -0.150 4.150 18 C -0.067 4.067 19 C -0.239 4.239 20 C 0.495 3.505 21 O -0.553 6.553 22 N -0.369 5.369 23 C -0.403 4.403 24 H 0.122 0.878 25 C 0.033 3.967 26 N -0.848 5.848 27 Si 0.992 3.008 28 H -0.244 1.244 29 H -0.261 1.261 30 H -0.291 1.291 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.147 0.853 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.171 0.829 44 H 0.158 0.842 45 H 0.110 0.890 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 13.897 13.048 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.242 5.242 3 C -0.035 4.035 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.146 4.146 7 C -0.110 4.110 8 C -0.179 4.179 9 C 0.059 3.941 10 F -0.126 7.126 11 C 0.004 3.996 12 C 0.089 3.911 13 N -0.256 5.256 14 C 0.021 3.979 15 C -0.146 4.146 16 C -0.091 4.091 17 C -0.168 4.168 18 C -0.087 4.087 19 C -0.246 4.246 20 C 0.291 3.709 21 O -0.431 6.431 22 N -0.074 5.074 23 C -0.529 4.529 24 H 0.139 0.861 25 C -0.179 4.179 26 N -0.478 5.478 27 Si 0.813 3.187 28 H -0.167 1.167 29 H -0.186 1.186 30 H -0.217 1.217 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.165 0.835 43 H 0.189 0.811 44 H 0.176 0.824 45 H 0.128 0.872 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.867 13.469 13.510 19.959 hybrid contribution 0.368 -0.841 -2.793 2.940 sum -5.500 12.628 10.717 17.452 Atomic orbital electron populations 1.22897 0.86693 1.02632 1.00199 1.61724 1.08913 1.12044 1.41522 1.21055 1.01555 0.87235 0.93668 1.19849 0.92812 1.00938 0.98164 1.21208 0.99495 0.97014 0.92632 1.21561 0.97603 0.98109 0.97335 1.21381 0.92253 0.98144 0.99196 1.21390 1.02318 1.01648 0.92564 1.17856 0.85962 1.02195 0.88129 1.91438 1.64207 1.93061 1.63867 1.20706 1.01395 0.84890 0.92625 1.23370 0.90587 0.94237 0.82931 1.68576 1.21982 1.16208 1.18865 1.19340 0.95762 0.88247 0.94520 1.20989 0.99861 0.97629 0.96107 1.21563 0.97030 0.91318 0.99165 1.21346 1.00253 1.01442 0.93805 1.21018 0.96188 0.93338 0.98158 1.21006 1.08025 0.97542 0.97997 1.18843 0.81546 0.82998 0.87486 1.90586 1.54957 1.53019 1.44560 1.42369 1.39614 1.07047 1.18374 1.20011 1.12124 1.11932 1.08822 0.86075 1.26385 0.94506 0.94037 1.02964 1.69934 1.18932 1.21106 1.37793 0.84948 0.78750 0.78468 0.76525 1.16685 1.18574 1.21703 0.96766 0.91268 0.90247 0.93755 0.88185 0.84008 0.82758 0.82185 0.83475 0.91944 0.87557 0.83477 0.81112 0.82443 0.87195 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 7.58 127.69 0.97 1.74 16 2 N -0.52 -16.97 4.41 -931.64 -4.11 -21.08 16 3 C 0.09 2.40 5.04 85.56 0.43 2.83 16 4 C -0.12 -2.77 5.28 -19.82 -0.10 -2.87 16 5 C -0.08 -1.65 9.67 22.26 0.22 -1.43 16 6 C -0.13 -1.91 10.04 22.27 0.22 -1.69 16 7 C -0.09 -1.29 10.04 22.26 0.22 -1.07 16 8 C -0.16 -2.91 10.03 22.31 0.22 -2.68 16 9 C 0.08 1.85 5.93 22.37 0.13 1.98 16 10 F -0.15 -3.92 13.19 44.97 0.59 -3.33 16 11 C 0.13 4.97 4.08 85.56 0.35 5.32 16 12 C 0.35 16.31 7.19 137.94 0.99 17.30 16 13 N -0.53 -23.55 7.10 -179.54 -1.27 -24.82 16 14 C 0.14 6.01 6.63 39.65 0.26 6.27 16 15 C -0.13 -4.32 10.03 22.48 0.23 -4.10 16 16 C -0.07 -1.99 10.00 22.30 0.22 -1.77 16 17 C -0.15 -4.68 10.02 22.32 0.22 -4.46 16 18 C -0.07 -2.85 9.68 22.44 0.22 -2.63 16 19 C -0.24 -11.80 5.89 -19.96 -0.12 -11.92 16 20 C 0.49 28.49 6.93 86.44 0.60 29.09 16 21 O -0.55 -35.17 14.28 -4.41 -0.06 -35.23 16 22 N -0.37 -19.80 2.68 -460.26 -1.23 -21.04 16 23 C -0.40 -21.22 8.24 84.07 0.69 -20.53 16 24 H 0.12 5.73 7.07 -2.91 -0.02 5.71 16 25 C 0.03 1.76 4.36 84.98 0.37 2.13 16 26 N -0.85 -49.87 11.54 21.68 0.25 -49.62 16 27 Si 0.99 41.82 29.60 68.60 2.03 43.85 16 28 H -0.24 -9.37 7.11 99.48 0.71 -8.67 16 29 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 30 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 31 H 0.01 0.45 7.74 -2.39 -0.02 0.43 16 32 H 0.07 2.59 5.61 -2.39 -0.01 2.58 16 33 H 0.08 2.47 4.61 -2.39 -0.01 2.46 16 34 H 0.04 1.14 8.06 -2.39 -0.02 1.13 16 35 H 0.10 2.32 7.74 -2.39 -0.02 2.31 16 36 H 0.14 2.39 8.00 -2.91 -0.02 2.37 16 37 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.06 2.23 7.56 -2.38 -0.02 2.22 16 41 H 0.11 3.92 7.83 -2.38 -0.02 3.91 16 42 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.11 4.82 7.83 -2.91 -0.02 4.80 16 46 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -75.67 379.50 3.57 -72.10 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.03 Total: 27.66 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.35 Total: 11.50 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -6.37 Total: -116.55 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.06 Total: -35.23 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.59 Total: -3.33 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -75.67 3.57 -72.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058329035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.547 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds