Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38234 * 120.00261 * 2 1 4 4 C 1.38236 * 120.00072 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00326 * 0.02562 * 4 3 2 6 6 S 1.76193 * 120.00400 * 179.97438 * 5 4 3 7 7 O 1.42105 * 106.40403 * 203.53958 * 6 5 4 8 8 O 1.42098 * 106.40145 * 336.45887 * 6 5 4 9 9 N 1.65606 * 107.21910 * 90.00069 * 6 5 4 10 10 C 1.46500 * 120.00055 * 64.99793 * 9 6 5 11 11 C 1.52996 * 109.46863 * 165.00064 * 10 9 6 12 12 H 1.09008 * 109.50063 * 55.00168 * 11 10 9 13 13 C 1.53122 * 109.50712 * 294.92231 * 11 10 9 14 14 C 1.53121 * 109.15918 * 182.44170 * 13 11 10 15 15 C 1.53042 * 109.30676 * 57.59774 * 14 13 11 16 16 N 1.46845 * 109.52388 * 300.83711 * 15 14 13 17 17 C 1.46898 * 111.00000 * 185.83943 * 16 15 14 18 18 H 1.09001 * 109.47076 * 175.78686 * 17 16 15 19 19 C 1.52995 * 109.47296 * 295.79208 * 17 16 15 20 20 C 1.50703 * 109.46981 * 55.79139 * 17 16 15 21 21 H 1.07997 * 119.99915 * 0.02562 * 20 17 16 22 22 C 1.37874 * 120.00070 * 179.97438 * 20 17 16 23 23 N 1.31515 * 120.00060 * 180.02562 * 22 20 17 24 24 Si 1.86807 * 120.00072 * 0.02562 * 22 20 17 25 25 H 1.48497 * 109.46860 * 89.99563 * 24 22 20 26 26 H 1.48490 * 109.47224 * 209.99786 * 24 22 20 27 27 H 1.48496 * 109.46959 * 329.99803 * 24 22 20 28 28 C 1.46850 * 111.19882 * 61.74332 * 16 15 14 29 29 C 1.38241 * 119.99609 * 0.24951 * 5 4 3 30 30 C 1.38232 * 120.00136 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46759 * 89.99534 * 1 2 3 32 32 H 1.08993 * 109.47232 * 210.00045 * 1 2 3 33 33 H 1.09006 * 109.47132 * 330.00100 * 1 2 3 34 34 H 1.08000 * 120.00363 * 0.02562 * 3 2 1 35 35 H 1.07999 * 119.99710 * 179.97438 * 4 3 2 36 36 H 0.97002 * 119.99610 * 244.99753 * 9 6 5 37 37 H 1.09002 * 109.46746 * 285.00258 * 10 9 6 38 38 H 1.09002 * 109.46843 * 45.00361 * 10 9 6 39 39 H 1.08997 * 109.52101 * 302.31209 * 13 11 10 40 40 H 1.09002 * 109.52136 * 62.49979 * 13 11 10 41 41 H 1.08993 * 109.47400 * 297.65924 * 14 13 11 42 42 H 1.09004 * 109.53607 * 177.57232 * 14 13 11 43 43 H 1.09006 * 109.45813 * 180.82232 * 15 14 13 44 44 H 1.08995 * 109.46613 * 60.85670 * 15 14 13 45 45 H 1.09001 * 109.47484 * 59.99728 * 19 17 16 46 46 H 1.09005 * 109.47387 * 179.97438 * 19 17 16 47 47 H 1.09002 * 109.46999 * 299.99609 * 19 17 16 48 48 H 0.97007 * 119.99888 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.46352 * 178.24126 * 28 16 15 50 50 H 1.09007 * 109.45817 * 58.27262 * 28 16 15 51 51 H 1.08005 * 119.99764 * 179.72636 * 29 5 4 52 52 H 1.08005 * 119.99829 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0016 6 16 6.0337 -0.0001 -0.0030 7 8 6.4345 -1.2497 -0.5483 8 8 6.4345 1.2498 -0.5472 9 7 6.5251 -0.0009 1.5785 10 6 6.2304 -1.1511 2.4366 11 6 7.0902 -1.0783 3.7000 12 1 6.9339 -0.1181 4.1918 13 6 8.5669 -1.2249 3.3226 14 6 9.4150 -1.2122 4.5975 15 6 8.9538 -2.3401 5.5233 16 7 7.5356 -2.1533 5.8556 17 6 7.0942 -3.1383 6.8520 18 1 6.0623 -2.9310 7.1355 19 6 7.1867 -4.5441 6.2553 20 6 7.9770 -3.0507 8.0703 21 1 8.7849 -2.3346 8.1013 22 6 7.7527 -3.8839 9.1456 23 7 8.5228 -3.8071 10.2089 24 14 6.3549 -5.1221 9.0921 25 1 6.8482 -6.4011 8.5211 26 1 5.8488 -5.3569 10.4682 27 1 5.2567 -4.5925 8.2445 28 6 6.6963 -2.2100 4.6519 29 6 3.5805 -1.1972 -0.0074 30 6 2.1982 -1.1971 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6583 2.1325 0.0004 35 1 4.1205 2.1324 -0.0010 36 1 7.0082 0.7603 1.9366 37 1 5.1761 -1.1373 2.7132 38 1 6.4528 -2.0724 1.8983 39 1 8.7164 -2.1673 2.7957 40 1 8.8626 -0.3960 2.6795 41 1 9.2959 -0.2543 5.1036 42 1 10.4637 -1.3595 4.3391 43 1 9.5463 -2.3242 6.4382 44 1 9.0860 -3.2988 5.0218 45 1 8.2186 -4.7514 5.9718 46 1 6.8596 -5.2750 6.9948 47 1 6.5481 -4.6074 5.3742 48 1 8.3652 -4.3937 10.9653 49 1 5.6492 -2.0996 4.9338 50 1 6.8392 -3.1693 4.1544 51 1 4.1205 -2.1325 -0.0127 52 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058330645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = -73.318076 kcal Electronic energy + Delta-G solvation = -31463.956547 eV Core-core repulsion = 27360.970995 eV Total energy + Delta-G solvation = -4102.985552 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.176 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.40878 -40.28202 -38.36638 -37.34739 -36.97140 -35.24404 -33.98325 -33.80317 -32.03968 -31.91441 -30.63215 -28.20903 -27.32981 -26.42872 -24.95389 -23.87269 -23.13750 -22.87753 -21.60743 -20.70348 -20.17055 -19.02128 -18.56127 -18.37828 -17.35678 -17.04201 -16.52692 -16.34570 -16.17076 -15.91481 -15.59390 -15.45036 -15.33994 -15.10070 -14.77335 -14.74663 -14.54538 -14.51402 -14.10544 -13.98913 -13.43164 -13.36039 -13.31823 -13.26860 -13.20976 -13.14288 -13.12329 -13.09909 -12.92022 -12.68600 -12.35645 -12.10674 -12.06892 -11.86733 -11.78427 -11.55655 -11.43957 -11.31035 -11.03649 -10.86990 -10.71902 -10.41665 -10.08045 -10.04159 -8.86675 -8.25369 -6.27825 -0.64472 -0.19837 0.31245 1.31196 1.36573 1.46722 1.98705 2.33748 2.47106 2.78852 3.08698 3.21983 3.34801 3.77927 3.80713 3.86119 3.92624 3.94278 4.05054 4.29406 4.30719 4.35165 4.36855 4.47050 4.51042 4.60119 4.62303 4.64537 4.67613 4.68386 4.71539 4.78813 4.79331 4.89651 4.97410 4.99240 5.01038 5.07336 5.09481 5.09873 5.18247 5.21004 5.24356 5.32347 5.41539 5.49027 5.49155 5.59492 5.67895 5.88342 6.07604 6.10347 6.47880 6.77863 6.81263 7.37054 8.91079 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.002390 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.263488 B =11714.714404 C =13340.531742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C -0.150 4.150 4 C -0.029 4.029 5 C -0.691 4.691 6 S 2.716 3.284 7 O -0.986 6.986 8 O -0.987 6.987 9 N -1.105 6.105 10 C 0.125 3.875 11 C -0.080 4.080 12 H 0.088 0.912 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.062 3.938 16 N -0.532 5.532 17 C 0.184 3.816 18 H 0.036 0.964 19 C -0.181 4.181 20 C -0.502 4.502 21 H 0.042 0.958 22 C 0.010 3.990 23 N -0.951 5.951 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.301 1.301 27 H -0.245 1.245 28 C 0.054 3.946 29 C -0.031 4.031 30 C -0.151 4.151 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.427 0.573 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.022 0.978 45 H 0.047 0.953 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.264 0.736 49 H 0.077 0.923 50 H 0.037 0.963 51 H 0.146 0.854 52 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.680 8.465 -24.661 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.035 4.035 3 C -0.169 4.169 4 C -0.048 4.048 5 C -0.779 4.779 6 S 2.808 3.192 7 O -0.976 6.976 8 O -0.978 6.978 9 N -0.867 5.867 10 C -0.002 4.002 11 C -0.100 4.100 12 H 0.106 0.894 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.066 4.066 16 N -0.256 5.256 17 C 0.075 3.925 18 H 0.054 0.946 19 C -0.239 4.239 20 C -0.541 4.541 21 H 0.060 0.940 22 C -0.187 4.187 23 N -0.592 5.592 24 Si 0.777 3.223 25 H -0.198 1.198 26 H -0.229 1.229 27 H -0.169 1.169 28 C -0.075 4.075 29 C -0.050 4.050 30 C -0.169 4.169 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.055 0.945 51 H 0.164 0.836 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.243 8.718 -25.099 30.633 hybrid contribution -0.343 -1.241 0.948 1.599 sum -15.587 7.478 -24.152 29.701 Atomic orbital electron populations 1.21018 0.88623 1.04494 1.03870 1.20684 0.98057 0.93060 0.91654 1.21518 0.93896 0.99270 1.02219 1.21148 0.95543 0.96663 0.91446 1.30698 1.26130 1.00275 1.20840 1.00928 0.73772 0.72291 0.72251 1.93552 1.81533 1.45379 1.77149 1.93549 1.82380 1.44757 1.77096 1.55207 1.72449 1.28700 1.30345 1.21352 0.99954 0.87805 0.91072 1.21266 0.94997 0.99997 0.93777 0.89393 1.21640 0.94076 1.02537 0.96669 1.21574 0.99328 0.98417 0.95587 1.21955 0.89725 0.96720 0.98209 1.61951 1.02758 1.50352 1.10509 1.19555 0.95774 0.86972 0.90179 0.94588 1.22697 1.01133 1.00012 1.00088 1.21255 1.14781 1.18615 0.99400 0.94005 1.25776 0.98641 0.99395 0.94878 1.70042 1.41203 1.40941 1.06979 0.85854 0.80691 0.79605 0.76162 1.19828 1.22901 1.16899 1.22143 0.97695 0.97268 0.90411 1.21169 0.95578 0.96685 0.91593 1.21516 0.93922 0.99291 1.02191 0.89311 0.90053 0.89930 0.82900 0.83532 0.73553 0.89906 0.90008 0.92098 0.90096 0.91925 0.91009 0.93181 0.95956 0.93356 0.94721 0.91689 0.92697 0.90503 0.94498 0.83647 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.01 71.23 0.71 -0.06 16 2 C -0.03 -0.41 5.88 -19.87 -0.12 -0.53 16 3 C -0.15 -1.92 9.70 22.27 0.22 -1.71 16 4 C -0.03 -0.45 9.52 22.27 0.21 -0.24 16 5 C -0.69 -12.06 5.95 22.27 0.13 -11.93 16 6 S 2.72 53.11 5.74 -56.49 -0.32 52.78 16 7 O -0.99 -24.86 16.75 -128.00 -2.14 -27.00 16 8 O -0.99 -24.04 17.28 -128.00 -2.21 -26.25 16 9 N -1.10 -17.48 5.57 -187.49 -1.04 -18.53 16 10 C 0.12 2.12 5.62 86.38 0.49 2.61 16 11 C -0.08 -1.75 2.37 -10.74 -0.03 -1.77 16 12 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 13 C -0.11 -2.52 5.14 30.68 0.16 -2.36 16 14 C -0.11 -3.13 6.09 30.65 0.19 -2.94 16 15 C 0.06 2.29 4.75 86.33 0.41 2.70 16 16 N -0.53 -20.24 4.67 -875.50 -4.09 -24.33 16 17 C 0.18 8.22 2.00 44.17 0.09 8.31 16 18 H 0.04 1.65 7.20 -2.39 -0.02 1.63 16 19 C -0.18 -7.28 7.98 71.98 0.57 -6.71 16 20 C -0.50 -27.97 8.44 25.60 0.22 -27.75 16 21 H 0.04 2.62 6.64 -2.91 -0.02 2.60 16 22 C 0.01 0.57 5.45 84.65 0.46 1.03 16 23 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 24 Si 0.95 44.25 24.37 68.60 1.67 45.93 16 25 H -0.27 -12.18 6.87 99.48 0.68 -11.50 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.25 -10.42 6.53 99.48 0.65 -9.77 16 28 C 0.05 1.51 4.17 86.33 0.36 1.87 16 29 C -0.03 -0.50 9.52 22.27 0.21 -0.29 16 30 C -0.15 -1.99 9.70 22.27 0.22 -1.78 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.40 8.09 -2.39 -0.02 0.38 16 33 H 0.08 0.38 8.09 -2.38 -0.02 0.36 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.15 1.98 7.62 -2.91 -0.02 1.96 16 36 H 0.43 5.54 8.39 -96.74 -0.81 4.73 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.41 7.75 -2.39 -0.02 1.39 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.50 7.62 -2.39 -0.02 1.49 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.05 2.25 6.02 -2.38 -0.01 2.24 16 44 H 0.02 0.82 6.71 -2.39 -0.02 0.80 16 45 H 0.05 1.98 6.63 -2.39 -0.02 1.96 16 46 H 0.03 1.45 3.27 -2.38 -0.01 1.45 16 47 H 0.06 2.16 6.54 -2.39 -0.02 2.15 16 48 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 49 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 50 H 0.04 1.01 6.63 -2.38 -0.02 1.00 16 51 H 0.15 2.09 7.61 -2.91 -0.02 2.07 16 52 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -75.38 407.36 -3.31 -78.69 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.03 Total: 19.07 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 4.50 Total: -41.55 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -4.84 Total: -101.68 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -4.36 Total: -53.25 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.67 Total: 45.93 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.32 Total: 52.78 kcal Total: -75.38 -3.31 -78.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058330645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.377 kcal (2) G-P(sol) polarization free energy of solvation -75.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds