Wall clock time and date at job start Tue Mar 31 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38244 * 120.00492 * 2 1 4 4 C 1.38226 * 120.00320 * 180.02562 * 3 2 1 5 5 C 1.38231 * 120.00140 * 359.97438 * 4 3 2 6 6 S 1.76203 * 120.00272 * 179.97438 * 5 4 3 7 7 O 1.42106 * 106.39766 * 336.45992 * 6 5 4 8 8 O 1.42108 * 106.40200 * 203.54476 * 6 5 4 9 9 N 1.65593 * 107.21924 * 90.00107 * 6 5 4 10 10 C 1.46499 * 119.99947 * 65.00161 * 9 6 5 11 11 C 1.53009 * 109.47095 * 165.00094 * 10 9 6 12 12 H 1.09006 * 109.49863 * 305.07705 * 11 10 9 13 13 C 1.53112 * 109.50118 * 65.19485 * 11 10 9 14 14 C 1.53124 * 109.15575 * 177.59502 * 13 11 10 15 15 C 1.53033 * 109.28194 * 302.34693 * 14 13 11 16 16 N 1.46846 * 109.52188 * 59.17806 * 15 14 13 17 17 C 1.46904 * 110.99937 * 174.16022 * 16 15 14 18 18 H 1.09007 * 109.46566 * 64.21273 * 17 16 15 19 19 C 1.52998 * 109.47027 * 184.21248 * 17 16 15 20 20 C 1.50701 * 109.47195 * 304.21598 * 17 16 15 21 21 H 1.08002 * 119.99761 * 359.97438 * 20 17 16 22 22 C 1.37871 * 119.99694 * 180.27796 * 20 17 16 23 23 N 1.31514 * 120.00482 * 359.71466 * 22 20 17 24 24 Si 1.86801 * 119.99746 * 179.72062 * 22 20 17 25 25 H 1.48504 * 109.47209 * 89.99886 * 24 22 20 26 26 H 1.48501 * 109.47358 * 209.99377 * 24 22 20 27 27 H 1.48496 * 109.47341 * 329.99989 * 24 22 20 28 28 C 1.46845 * 111.19980 * 298.26178 * 16 15 14 29 29 C 1.38237 * 119.99996 * 0.25759 * 5 4 3 30 30 C 1.38233 * 119.99889 * 359.49077 * 29 5 4 31 31 H 1.09001 * 109.47306 * 89.99329 * 1 2 3 32 32 H 1.09000 * 109.47521 * 210.00174 * 1 2 3 33 33 H 1.09002 * 109.47027 * 329.99991 * 1 2 3 34 34 H 1.08004 * 119.99483 * 0.02562 * 3 2 1 35 35 H 1.08006 * 119.99904 * 179.97438 * 4 3 2 36 36 H 0.97003 * 120.00047 * 245.00299 * 9 6 5 37 37 H 1.09002 * 109.47391 * 45.00443 * 10 9 6 38 38 H 1.08997 * 109.47419 * 285.00069 * 10 9 6 39 39 H 1.08998 * 109.52381 * 297.50031 * 13 11 10 40 40 H 1.09003 * 109.52260 * 57.63225 * 13 11 10 41 41 H 1.08995 * 109.50197 * 62.29198 * 14 13 11 42 42 H 1.09004 * 109.49986 * 182.40677 * 14 13 11 43 43 H 1.09005 * 109.45877 * 299.16587 * 15 14 13 44 44 H 1.08997 * 109.46632 * 179.19532 * 15 14 13 45 45 H 1.09004 * 109.46783 * 180.02562 * 19 17 16 46 46 H 1.09005 * 109.46870 * 300.00063 * 19 17 16 47 47 H 1.08998 * 109.47156 * 60.00002 * 19 17 16 48 48 H 0.96995 * 120.00207 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.46396 * 181.76194 * 28 16 15 50 50 H 1.09003 * 109.45840 * 301.72131 * 28 16 15 51 51 H 1.08004 * 120.00200 * 179.72299 * 29 5 4 52 52 H 1.08002 * 120.00355 * 180.23295 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0005 6 16 6.0337 -0.0001 -0.0019 7 8 6.4345 1.2495 -0.5472 8 8 6.4345 -1.2501 -0.5462 9 7 6.5251 0.0006 1.5794 10 6 6.2304 -1.1489 2.4385 11 6 7.0903 -1.0751 3.7020 12 1 8.1412 -0.9981 3.4229 13 6 6.6873 0.1526 4.5235 14 6 7.5104 0.1857 5.8143 15 6 7.2834 -1.1127 6.5917 16 7 7.6845 -2.2571 5.7635 17 6 7.6109 -3.5105 6.5263 18 1 6.5753 -3.7062 6.8045 19 6 8.1344 -4.6624 5.6661 20 6 8.4515 -3.3909 7.7714 21 1 8.9871 -2.4755 7.9754 22 6 8.5416 -4.4522 8.6467 23 7 7.8897 -5.5670 8.3981 24 14 9.5898 -4.3067 10.1861 25 1 8.7620 -3.7793 11.3006 26 1 10.1190 -5.6448 10.5530 27 1 10.7214 -3.3803 9.9288 28 6 6.8755 -2.3370 4.5406 29 6 3.5805 -1.1971 -0.0054 30 6 2.1981 -1.1972 0.0004 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6582 2.1325 0.0004 35 1 4.1205 2.1325 -0.0010 36 1 7.0081 0.7621 1.9369 37 1 6.4529 -2.0708 1.9011 38 1 5.1762 -1.1350 2.7152 39 1 6.8794 1.0566 3.9456 40 1 5.6266 0.0951 4.7681 41 1 8.5679 0.2830 5.5691 42 1 7.1979 1.0339 6.4234 43 1 6.2278 -1.2025 6.8485 44 1 7.8791 -1.0985 7.5044 45 1 8.0794 -5.5924 6.2320 46 1 7.5264 -4.7488 4.7656 47 1 9.1700 -4.4666 5.3879 48 1 7.9534 -6.3138 9.0138 49 1 7.1749 -3.2119 3.9636 50 1 5.8219 -2.4211 4.8071 51 1 4.1205 -2.1325 -0.0099 52 1 1.6581 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058330647.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:34 Heat of formation + Delta-G solvation = -79.053383 kcal Electronic energy + Delta-G solvation = -31362.400605 eV Core-core repulsion = 27259.166352 eV Total energy + Delta-G solvation = -4103.234254 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.176 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.30608 -40.21891 -38.37256 -37.21275 -36.98485 -35.34678 -33.98476 -33.54126 -32.04707 -31.97027 -30.17360 -28.21404 -27.58567 -26.16113 -24.96469 -23.87454 -22.91868 -22.66623 -21.56058 -20.68423 -20.37445 -19.07303 -18.48845 -18.21529 -17.41062 -17.16263 -16.50030 -16.36483 -16.15184 -15.70381 -15.55386 -15.37301 -15.24710 -15.08967 -14.76799 -14.62638 -14.52159 -14.29337 -13.97660 -13.80933 -13.43944 -13.32160 -13.27577 -13.22012 -13.13385 -13.12331 -13.10498 -12.88858 -12.78647 -12.47282 -12.20689 -12.11207 -12.07888 -12.02560 -11.86683 -11.78766 -11.52723 -11.36761 -10.96830 -10.72032 -10.48399 -10.46381 -10.08737 -10.04891 -8.86322 -8.10153 -6.21414 -0.66116 -0.20701 0.30647 1.41785 1.43510 1.53738 1.96719 2.42822 2.46322 2.77608 3.17284 3.25097 3.39102 3.77823 3.82653 3.85658 3.88376 3.93591 4.06579 4.26911 4.31927 4.34536 4.38151 4.55365 4.58053 4.62495 4.66863 4.67969 4.74453 4.78553 4.83078 4.87341 4.95339 5.00355 5.03215 5.05666 5.08744 5.08809 5.09609 5.19024 5.23866 5.28634 5.33016 5.40576 5.48385 5.52107 5.60954 5.75713 5.84512 5.87746 6.06750 6.29280 6.46596 6.81938 6.94659 7.47772 8.95825 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.002130 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.205888 B =13144.702178 C =13698.390402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C -0.149 4.149 4 C -0.027 4.027 5 C -0.690 4.690 6 S 2.714 3.286 7 O -0.985 6.985 8 O -0.989 6.989 9 N -1.104 6.104 10 C 0.125 3.875 11 C -0.081 4.081 12 H 0.083 0.917 13 C -0.109 4.109 14 C -0.109 4.109 15 C 0.062 3.938 16 N -0.539 5.539 17 C 0.217 3.783 18 H -0.040 1.040 19 C -0.122 4.122 20 C -0.516 4.516 21 H 0.059 0.941 22 C 0.010 3.990 23 N -0.921 5.921 24 Si 0.958 3.042 25 H -0.276 1.276 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.056 3.944 29 C -0.033 4.033 30 C -0.151 4.151 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.427 0.573 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.008 0.992 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.261 0.739 49 H 0.070 0.930 50 H 0.020 0.980 51 H 0.143 0.857 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 15.155 -17.322 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.168 4.168 4 C -0.046 4.046 5 C -0.779 4.779 6 S 2.806 3.194 7 O -0.975 6.975 8 O -0.979 6.979 9 N -0.867 5.867 10 C -0.001 4.001 11 C -0.101 4.101 12 H 0.101 0.899 13 C -0.146 4.146 14 C -0.147 4.147 15 C -0.067 4.067 16 N -0.263 5.263 17 C 0.110 3.890 18 H -0.023 1.023 19 C -0.180 4.180 20 C -0.554 4.554 21 H 0.077 0.923 22 C -0.189 4.189 23 N -0.561 5.561 24 Si 0.784 3.216 25 H -0.202 1.202 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.072 4.072 29 C -0.052 4.052 30 C -0.170 4.170 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.026 0.974 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.038 0.962 51 H 0.161 0.839 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.642 14.884 -18.183 27.171 hybrid contribution -0.655 -0.450 1.760 1.931 sum -14.297 14.434 -16.423 26.124 Atomic orbital electron populations 1.21018 0.88564 1.04496 1.03902 1.20689 0.98080 0.93020 0.91610 1.21526 0.93854 0.99252 1.02135 1.21155 0.95545 0.96583 0.91346 1.30663 1.25972 1.00322 1.20906 1.00964 0.73878 0.72311 0.72231 1.93548 1.82391 1.44623 1.76980 1.93554 1.81603 1.45491 1.77212 1.55205 1.72504 1.28693 1.30259 1.21318 0.99913 0.87820 0.91091 1.21266 1.00657 0.94907 0.93286 0.89870 1.21631 0.99669 0.97645 0.95690 1.21574 1.00861 0.95619 0.96663 1.21981 0.96728 0.91191 0.96754 1.61950 1.53828 1.04071 1.06488 1.19004 0.92612 0.86075 0.91273 1.02257 1.21669 0.98444 1.00735 0.97161 1.21434 1.28799 0.99672 1.05541 0.92267 1.25710 0.97024 0.95016 1.01125 1.70018 1.43749 1.04467 1.37871 0.85549 0.79092 0.77322 0.79615 1.20216 1.21009 1.19357 1.22092 0.94562 0.98302 0.92293 1.21159 0.95652 0.96694 0.91680 1.21510 0.93861 0.99363 1.02256 0.89265 0.90162 0.89798 0.82685 0.83316 0.73537 0.90220 0.90263 0.89386 0.91873 0.91683 0.90290 0.97424 0.92188 0.92287 0.94940 0.95103 0.93008 0.91186 0.96184 0.83941 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.01 71.23 0.71 -0.13 16 2 C -0.03 -0.43 5.88 -19.87 -0.12 -0.55 16 3 C -0.15 -1.96 9.70 22.27 0.22 -1.74 16 4 C -0.03 -0.44 9.52 22.27 0.21 -0.23 16 5 C -0.69 -12.90 5.95 22.27 0.13 -12.77 16 6 S 2.71 57.63 5.74 -56.49 -0.32 57.31 16 7 O -0.99 -24.94 17.28 -128.00 -2.21 -27.15 16 8 O -0.99 -27.31 16.75 -128.00 -2.14 -29.45 16 9 N -1.10 -19.57 5.88 -187.48 -1.10 -20.68 16 10 C 0.13 2.51 5.62 86.38 0.49 2.99 16 11 C -0.08 -1.99 2.46 -10.74 -0.03 -2.02 16 12 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 13 C -0.11 -2.37 5.13 30.67 0.16 -2.21 16 14 C -0.11 -2.95 6.09 30.65 0.19 -2.76 16 15 C 0.06 2.31 5.21 86.32 0.45 2.76 16 16 N -0.54 -22.31 4.52 -875.52 -3.96 -26.27 16 17 C 0.22 11.02 2.07 44.17 0.09 11.12 16 18 H -0.04 -2.28 8.14 -2.38 -0.02 -2.30 16 19 C -0.12 -5.99 8.75 71.98 0.63 -5.36 16 20 C -0.52 -28.27 7.86 25.60 0.20 -28.07 16 21 H 0.06 3.22 6.40 -2.91 -0.02 3.20 16 22 C 0.01 0.53 5.30 84.65 0.45 0.98 16 23 N -0.92 -53.11 11.31 21.45 0.24 -52.87 16 24 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.06 1.89 4.50 86.32 0.39 2.28 16 29 C -0.03 -0.58 9.52 22.27 0.21 -0.37 16 30 C -0.15 -2.21 9.70 22.27 0.22 -2.00 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 33 H 0.08 0.41 8.09 -2.39 -0.02 0.39 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.15 2.02 7.62 -2.91 -0.02 2.00 16 36 H 0.43 6.10 7.45 -96.74 -0.72 5.38 16 37 H 0.08 1.67 7.75 -2.39 -0.02 1.65 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.41 6.98 -2.39 -0.02 1.39 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.06 2.53 6.02 -2.39 -0.01 2.51 16 45 H 0.06 3.20 6.06 -2.38 -0.01 3.19 16 46 H 0.03 1.39 6.28 -2.38 -0.01 1.37 16 47 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 48 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 49 H 0.07 2.40 6.01 -2.39 -0.01 2.39 16 50 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.14 2.40 7.61 -2.91 -0.02 2.38 16 52 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -72.23 415.80 -2.68 -74.91 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.19 Total: 16.60 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 4.60 Total: -38.08 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -4.82 Total: -99.81 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -4.36 Total: -56.60 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 57.63 SS G_CDS: -0.32 Total: 57.31 kcal Total: -72.23 -2.68 -74.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058330647.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.145 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds