Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39758 * 125.83379 * 2 1 4 4 C 1.36108 * 107.82615 * 180.02562 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.46932 * 179.97438 * 8 6 5 10 10 C 1.34551 * 126.08300 * 124.71366 * 9 8 6 11 11 O 1.34780 * 107.27245 * 179.89852 * 10 9 8 12 12 C 1.34423 * 107.69281 * 0.36112 * 11 10 9 13 13 C 1.47829 * 125.72388 * 179.80569 * 12 11 10 14 14 C 1.39577 * 120.14265 * 179.68210 * 13 12 11 15 15 C 1.37954 * 119.85050 * 179.74701 * 14 13 12 16 16 C 1.38359 * 120.14455 * 0.55869 * 15 14 13 17 17 C 1.38348 * 120.29474 * 359.69280 * 16 15 14 18 18 C 1.37963 * 120.14157 * 0.02865 * 17 16 15 19 19 N 1.31223 * 108.55212 * 359.77462 * 12 11 10 20 20 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 21 21 C 1.46495 * 126.05131 * 179.73218 * 20 4 3 22 22 C 1.50704 * 109.46917 * 90.00227 * 21 20 4 23 23 H 1.07996 * 119.99789 * 0.02562 * 22 21 20 24 24 C 1.37877 * 119.99975 * 180.02562 * 22 21 20 25 25 N 1.31506 * 120.00217 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99911 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46993 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47356 * 119.99801 * 26 24 22 29 29 H 1.48499 * 109.46972 * 240.00022 * 26 24 22 30 30 N 1.30845 * 125.84224 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47266 * 90.00036 * 1 2 3 32 32 H 1.09005 * 109.47037 * 209.99685 * 1 2 3 33 33 H 1.09000 * 109.47039 * 329.99915 * 1 2 3 34 34 H 1.07998 * 126.09135 * 0.05460 * 3 2 1 35 35 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46758 * 299.99577 * 8 6 5 37 37 H 1.08999 * 109.47133 * 60.00019 * 8 6 5 38 38 H 1.08002 * 126.35987 * 0.02562 * 10 9 8 39 39 H 1.08000 * 120.07089 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.93247 * 180.29889 * 15 14 13 41 41 H 1.08002 * 119.85060 * 179.71916 * 16 15 14 42 42 H 1.07996 * 119.93343 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.07418 * 180.02562 * 18 17 16 44 44 H 1.09000 * 109.47596 * 210.00544 * 21 20 4 45 45 H 1.09004 * 109.47027 * 330.01061 * 21 20 4 46 46 H 0.97005 * 120.00533 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7513 1.5277 -0.0013 6 6 4.6156 2.8686 -0.0009 7 8 3.5095 3.3663 -0.0004 8 6 5.8383 3.7496 -0.0011 9 6 5.4152 5.1959 -0.0012 10 6 5.7871 6.1304 0.8925 11 8 5.1931 7.2859 0.5338 12 6 4.4606 7.0442 -0.5670 13 6 3.6405 8.0370 -1.2932 14 6 2.9283 7.6589 -2.4325 15 6 2.1607 8.5890 -3.1025 16 6 2.1052 9.8967 -2.6542 17 6 2.8129 10.2792 -1.5286 18 6 3.5797 9.3576 -0.8460 19 7 4.5961 5.7794 -0.8893 20 7 3.6093 -0.6403 -0.0004 21 6 4.7870 -1.5115 -0.0063 22 6 5.1982 -1.8101 1.4125 23 1 4.6379 -1.3929 2.2361 24 6 6.2896 -2.6157 1.6589 25 7 6.9715 -3.1240 0.6559 26 14 6.7988 -2.9864 3.4176 27 1 5.8746 -2.2998 4.3556 28 1 6.7428 -4.4519 3.6507 29 1 8.1839 -2.5015 3.6445 30 7 2.2732 -1.0607 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.9901 2.1597 0.0008 35 1 5.6358 1.1296 -0.0013 36 1 6.4336 3.5449 0.8887 37 1 6.4331 3.5453 -0.8913 38 1 6.4417 5.9826 1.7387 39 1 2.9744 6.6394 -2.7860 40 1 1.6053 8.2967 -3.9814 41 1 1.5064 10.6220 -3.1850 42 1 2.7650 11.3015 -1.1836 43 1 4.1314 9.6573 0.0328 44 1 4.5474 -2.4431 -0.5189 45 1 5.6058 -1.0120 -0.5243 46 1 7.7396 -3.6906 0.8293 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058332221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = 93.282184 kcal Electronic energy + Delta-G solvation = -31097.559998 eV Core-core repulsion = 26762.814481 eV Total energy + Delta-G solvation = -4334.745517 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.45860 -40.79109 -39.33613 -39.08718 -35.29478 -34.62237 -33.73122 -33.03518 -32.05686 -31.35927 -30.87254 -29.16607 -28.54833 -27.34903 -26.01413 -24.14608 -23.28067 -22.88885 -22.07455 -21.32789 -20.71438 -19.66908 -19.21598 -17.99775 -17.08581 -16.86963 -16.75949 -16.52283 -16.22689 -15.87275 -15.47322 -15.28041 -14.90792 -14.49649 -14.26143 -14.15654 -13.92621 -13.77782 -13.58116 -13.21909 -13.11189 -12.83088 -12.77504 -12.49555 -12.46021 -11.97577 -11.80315 -11.75358 -11.55808 -11.45340 -11.27501 -11.05818 -10.91805 -10.61725 -10.36199 -10.30137 -10.00987 -9.79788 -9.78783 -9.42590 -9.32440 -8.73638 -8.44271 -7.88223 -7.39033 -6.34216 -4.42495 0.39428 1.04180 1.56881 2.32755 2.45121 2.50536 2.95558 3.13451 3.14862 3.22923 3.29106 3.52062 3.61550 3.65532 3.84038 4.23526 4.42134 4.50524 4.60574 4.63988 4.76302 4.88109 4.99125 5.04710 5.11618 5.16357 5.25420 5.40063 5.41788 5.58908 5.62460 5.68176 5.71539 5.90249 6.05594 6.10907 6.11619 6.18117 6.19447 6.23385 6.32165 6.47582 6.53992 6.71478 6.85687 7.06175 7.55232 7.56884 7.59624 7.67022 7.79847 7.96314 8.37087 8.63790 8.73386 9.25057 10.72856 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002123 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.330355 B =13182.654461 C =14794.920753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.304 3.696 5 N -0.642 5.642 6 C 0.520 3.480 7 O -0.496 6.496 8 C -0.055 4.055 9 C 0.011 3.989 10 C -0.063 4.063 11 O -0.197 6.197 12 C 0.226 3.774 13 C -0.013 4.013 14 C -0.068 4.068 15 C -0.121 4.121 16 C -0.104 4.104 17 C -0.123 4.123 18 C -0.092 4.092 19 N -0.438 5.438 20 N -0.345 5.345 21 C 0.256 3.744 22 C -0.538 4.538 23 H 0.065 0.935 24 C 0.066 3.934 25 N -0.890 5.890 26 Si 0.906 3.094 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.281 1.281 30 N -0.287 5.287 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.416 0.584 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.220 0.780 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 25.276 -4.439 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.082 3.918 5 N -0.290 5.290 6 C 0.306 3.694 7 O -0.368 6.368 8 C -0.096 4.096 9 C -0.111 4.111 10 C -0.134 4.134 11 O -0.084 6.084 12 C 0.022 3.978 13 C -0.014 4.014 14 C -0.088 4.088 15 C -0.139 4.139 16 C -0.123 4.123 17 C -0.141 4.141 18 C -0.111 4.111 19 N -0.166 5.166 20 N -0.131 5.131 21 C 0.138 3.862 22 C -0.577 4.577 23 H 0.083 0.917 24 C -0.138 4.138 25 N -0.528 5.528 26 Si 0.732 3.268 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 N -0.112 5.112 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.178 0.822 35 H 0.252 0.748 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.236 0.764 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.417 23.936 -4.980 24.686 hybrid contribution 1.520 0.365 1.692 2.304 sum -1.897 24.301 -3.288 24.596 Atomic orbital electron populations 1.20012 0.87669 1.02367 1.02002 1.22019 0.96478 0.91088 1.01890 1.21261 0.89126 1.00387 1.21953 1.17911 0.88047 0.83277 1.02607 1.42765 1.08222 1.05509 1.72470 1.20228 0.91266 0.81141 0.76801 1.90680 1.26473 1.73468 1.46140 1.19909 0.96376 0.86985 1.06321 1.20944 0.99288 0.96533 0.94357 1.24854 1.03040 0.82789 1.02688 1.84476 1.49237 1.35785 1.38852 1.23756 0.96115 0.91550 0.86373 1.17289 0.98112 0.90339 0.95685 1.21270 0.93906 1.00801 0.92778 1.21148 0.99209 0.93126 1.00423 1.21367 0.98339 0.96343 0.96205 1.21057 0.97488 0.99624 0.95951 1.21233 0.98492 0.91676 0.99741 1.70529 1.15375 1.03874 1.26813 1.49327 1.06489 1.02186 1.55082 1.19616 0.77883 0.89785 0.98882 1.21384 1.13113 1.31780 0.91411 0.91671 1.24941 0.95776 0.94921 0.98132 1.69924 1.19246 1.32711 1.30875 0.86309 0.78309 0.78467 0.83669 1.19576 1.20553 1.20650 1.77341 0.86161 1.21802 1.25908 0.91404 0.91543 0.91213 0.82241 0.74768 0.86433 0.86544 0.76358 0.84191 0.85044 0.85540 0.85318 0.85231 0.92586 0.93797 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.44 36.01 0.38 -0.58 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.45 16 3 C -0.30 -6.27 9.58 -39.78 -0.38 -6.65 16 4 C 0.30 6.52 7.66 -153.15 -1.17 5.35 16 5 N -0.64 -11.15 5.42 -11.46 -0.06 -11.21 16 6 C 0.52 8.28 7.79 -10.99 -0.09 8.19 16 7 O -0.50 -9.53 12.70 5.55 0.07 -9.46 16 8 C -0.06 -0.61 6.27 -29.04 -0.18 -0.79 16 9 C 0.01 0.14 5.87 -82.88 -0.49 -0.35 16 10 C -0.06 -0.64 12.06 29.43 0.35 -0.29 16 11 O -0.20 -2.32 10.52 4.06 0.04 -2.28 16 12 C 0.23 2.95 7.90 -13.89 -0.11 2.84 16 13 C -0.01 -0.15 5.87 -104.98 -0.62 -0.76 16 14 C -0.07 -0.71 9.69 -39.19 -0.38 -1.09 16 15 C -0.12 -0.96 10.03 -39.64 -0.40 -1.36 16 16 C -0.10 -0.70 10.04 -39.50 -0.40 -1.10 16 17 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 18 C -0.09 -0.81 9.72 -39.19 -0.38 -1.19 16 19 N -0.44 -6.43 10.29 -7.97 -0.08 -6.51 16 20 N -0.35 -8.19 3.60 -61.57 -0.22 -8.42 16 21 C 0.26 6.40 6.00 -5.19 -0.03 6.37 16 22 C -0.54 -14.40 9.39 -34.44 -0.32 -14.72 16 23 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 24 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.89 -24.15 13.29 55.43 0.74 -23.42 16 26 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 N -0.29 -6.81 12.56 33.65 0.42 -6.39 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.16 3.36 5.83 -52.49 -0.31 3.06 16 35 H 0.42 6.46 7.97 -40.82 -0.33 6.14 16 36 H 0.12 0.89 8.11 -51.93 -0.42 0.47 16 37 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.22 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.14 1.56 7.83 -52.49 -0.41 1.15 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.98 7.90 -52.48 -0.41 0.56 16 44 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.04 1.05 7.51 -51.93 -0.39 0.66 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -35.24 404.46 -8.94 -44.18 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.62 Total: 7.22 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -5.30 Total: -5.30 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.79 Total: -55.95 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.11 Total: -11.74 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.24 -8.94 -44.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058332221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.461 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds