Wall clock time and date at job start Tue Mar 31 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39758 * 125.83379 * 2 1 4 4 C 1.36108 * 107.82615 * 180.02562 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.50697 * 109.46932 * 179.97438 * 8 6 5 10 10 C 1.34551 * 126.08300 * 124.71366 * 9 8 6 11 11 O 1.34780 * 107.27245 * 179.89852 * 10 9 8 12 12 C 1.34423 * 107.69281 * 0.36112 * 11 10 9 13 13 C 1.47829 * 125.72388 * 179.80569 * 12 11 10 14 14 C 1.39577 * 120.14265 * 179.68210 * 13 12 11 15 15 C 1.37954 * 119.85050 * 179.74701 * 14 13 12 16 16 C 1.38359 * 120.14455 * 0.55869 * 15 14 13 17 17 C 1.38348 * 120.29474 * 359.69280 * 16 15 14 18 18 C 1.37963 * 120.14157 * 0.02865 * 17 16 15 19 19 N 1.31223 * 108.55212 * 359.77462 * 12 11 10 20 20 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 21 21 C 1.46495 * 126.05131 * 179.73218 * 20 4 3 22 22 C 1.50704 * 109.46917 * 90.00227 * 21 20 4 23 23 H 1.07996 * 119.99789 * 0.02562 * 22 21 20 24 24 C 1.37877 * 119.99975 * 180.02562 * 22 21 20 25 25 N 1.31506 * 120.00217 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99911 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46993 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47356 * 119.99801 * 26 24 22 29 29 H 1.48499 * 109.46972 * 240.00022 * 26 24 22 30 30 N 1.30845 * 125.84224 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47266 * 90.00036 * 1 2 3 32 32 H 1.09005 * 109.47037 * 209.99685 * 1 2 3 33 33 H 1.09000 * 109.47039 * 329.99915 * 1 2 3 34 34 H 1.07998 * 126.09135 * 0.05460 * 3 2 1 35 35 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46758 * 299.99577 * 8 6 5 37 37 H 1.08999 * 109.47133 * 60.00019 * 8 6 5 38 38 H 1.08002 * 126.35987 * 0.02562 * 10 9 8 39 39 H 1.08000 * 120.07089 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.93247 * 180.29889 * 15 14 13 41 41 H 1.08002 * 119.85060 * 179.71916 * 16 15 14 42 42 H 1.07996 * 119.93343 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.07418 * 180.02562 * 18 17 16 44 44 H 1.09000 * 109.47596 * 210.00544 * 21 20 4 45 45 H 1.09004 * 109.47027 * 330.01061 * 21 20 4 46 46 H 0.97005 * 120.00533 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7513 1.5277 -0.0013 6 6 4.6156 2.8686 -0.0009 7 8 3.5095 3.3663 -0.0004 8 6 5.8383 3.7496 -0.0011 9 6 5.4152 5.1959 -0.0012 10 6 5.7871 6.1304 0.8925 11 8 5.1931 7.2859 0.5338 12 6 4.4606 7.0442 -0.5670 13 6 3.6405 8.0370 -1.2932 14 6 2.9283 7.6589 -2.4325 15 6 2.1607 8.5890 -3.1025 16 6 2.1052 9.8967 -2.6542 17 6 2.8129 10.2792 -1.5286 18 6 3.5797 9.3576 -0.8460 19 7 4.5961 5.7794 -0.8893 20 7 3.6093 -0.6403 -0.0004 21 6 4.7870 -1.5115 -0.0063 22 6 5.1982 -1.8101 1.4125 23 1 4.6379 -1.3929 2.2361 24 6 6.2896 -2.6157 1.6589 25 7 6.9715 -3.1240 0.6559 26 14 6.7988 -2.9864 3.4176 27 1 5.8746 -2.2998 4.3556 28 1 6.7428 -4.4519 3.6507 29 1 8.1839 -2.5015 3.6445 30 7 2.2732 -1.0607 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.9901 2.1597 0.0008 35 1 5.6358 1.1296 -0.0013 36 1 6.4336 3.5449 0.8887 37 1 6.4331 3.5453 -0.8913 38 1 6.4417 5.9826 1.7387 39 1 2.9744 6.6394 -2.7860 40 1 1.6053 8.2967 -3.9814 41 1 1.5064 10.6220 -3.1850 42 1 2.7650 11.3015 -1.1836 43 1 4.1314 9.6573 0.0328 44 1 4.5474 -2.4431 -0.5189 45 1 5.6058 -1.0120 -0.5243 46 1 7.7396 -3.6906 0.8293 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058332221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:16 Heat of formation + Delta-G solvation = 70.157516 kcal Electronic energy + Delta-G solvation = -31098.562759 eV Core-core repulsion = 26762.814481 eV Total energy + Delta-G solvation = -4335.748278 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.148 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.32484 -42.40111 -40.52762 -39.93221 -36.35776 -36.08979 -35.54537 -33.88340 -33.77008 -32.04186 -31.74281 -30.74032 -29.91257 -28.47922 -27.81200 -24.92011 -24.79949 -24.00224 -23.22542 -22.17687 -21.74014 -21.20839 -20.67799 -18.91841 -18.77186 -18.36390 -17.94282 -17.47831 -17.37298 -16.80190 -16.66606 -16.47522 -16.19839 -15.86306 -15.70539 -15.31012 -14.92983 -14.63641 -14.53115 -14.41777 -14.38669 -14.05717 -13.96268 -13.87781 -13.66831 -13.38867 -13.30860 -13.13762 -12.87771 -12.71114 -12.38496 -12.31846 -12.21352 -12.05716 -11.89341 -11.67211 -11.54205 -11.44632 -10.93596 -10.76190 -10.61413 -9.95328 -9.63482 -9.20790 -9.05839 -8.36208 -6.53609 -0.32961 0.41593 0.77129 0.82220 1.33394 1.35459 1.39347 1.50979 1.65112 1.67302 1.75136 2.06220 2.24858 2.36994 2.83309 2.86629 2.94102 3.54686 3.59600 3.82274 3.91211 4.01179 4.04988 4.22099 4.25564 4.38916 4.42524 4.48124 4.55152 4.62337 4.70705 4.73635 4.83158 4.84313 4.86540 4.89191 4.94416 4.95775 5.07939 5.11704 5.20123 5.23853 5.44746 5.48994 5.51540 5.53460 5.77047 5.94951 5.95330 6.16879 6.31581 6.58119 6.70459 6.98879 7.06324 7.18591 8.70488 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002123 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.330355 B =13182.654461 C =14794.920753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.311 4.311 4 C 0.304 3.696 5 N -0.639 5.639 6 C 0.518 3.482 7 O -0.530 6.530 8 C -0.043 4.043 9 C -0.024 4.024 10 C -0.045 4.045 11 O -0.201 6.201 12 C 0.213 3.787 13 C -0.041 4.041 14 C -0.090 4.090 15 C -0.124 4.124 16 C -0.098 4.098 17 C -0.119 4.119 18 C -0.097 4.097 19 N -0.478 5.478 20 N -0.366 5.366 21 C 0.271 3.729 22 C -0.553 4.553 23 H 0.046 0.954 24 C 0.027 3.973 25 N -0.914 5.914 26 Si 0.970 3.030 27 H -0.277 1.277 28 H -0.278 1.278 29 H -0.262 1.262 30 N -0.332 5.332 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.424 0.576 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.266 0.734 39 H 0.118 0.882 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.026 0.974 45 H 0.051 0.949 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 27.663 -3.358 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.108 4.108 3 C -0.343 4.343 4 C 0.081 3.919 5 N -0.288 5.288 6 C 0.307 3.693 7 O -0.404 6.404 8 C -0.083 4.083 9 C -0.146 4.146 10 C -0.115 4.115 11 O -0.087 6.087 12 C 0.009 3.991 13 C -0.043 4.043 14 C -0.110 4.110 15 C -0.142 4.142 16 C -0.116 4.116 17 C -0.137 4.137 18 C -0.117 4.117 19 N -0.207 5.207 20 N -0.152 5.152 21 C 0.153 3.847 22 C -0.591 4.591 23 H 0.065 0.935 24 C -0.175 4.175 25 N -0.551 5.551 26 Si 0.795 3.205 27 H -0.202 1.202 28 H -0.203 1.203 29 H -0.187 1.187 30 N -0.157 5.157 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.262 0.738 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.281 0.719 39 H 0.136 0.864 40 H 0.167 0.833 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.157 0.843 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.870 26.338 -3.912 26.781 hybrid contribution 1.282 -0.265 1.296 1.842 sum -1.588 26.073 -2.616 26.252 Atomic orbital electron populations 1.20208 0.84061 1.03780 1.03800 1.22857 0.98697 0.90099 0.99139 1.21411 0.89391 1.00514 1.22976 1.18299 0.89648 0.82826 1.01128 1.42982 1.07489 1.05831 1.72474 1.21252 0.92544 0.80572 0.74972 1.90656 1.28460 1.73810 1.47511 1.20028 0.94082 0.84955 1.09223 1.21296 1.00450 0.97564 0.95249 1.25707 1.01766 0.81558 1.02461 1.84487 1.49190 1.36500 1.38543 1.24149 0.96511 0.91640 0.86796 1.17532 0.99115 0.91214 0.96396 1.21248 0.95521 1.00560 0.93632 1.21414 0.98637 0.93427 1.00725 1.21778 0.97714 0.96191 0.95901 1.21464 0.96153 1.00623 0.95441 1.21432 0.98966 0.91003 1.00276 1.70486 1.16813 1.04986 1.28368 1.49162 1.06277 1.02848 1.56907 1.19253 0.78597 0.88960 0.97920 1.21408 1.13567 1.32651 0.91519 0.93522 1.25687 0.95433 0.94293 1.02043 1.69995 1.19572 1.32841 1.32733 0.85324 0.78503 0.78091 0.78627 1.20171 1.20331 1.18683 1.77286 0.86515 1.23492 1.28372 0.89292 0.90738 0.89130 0.82182 0.73826 0.82344 0.84537 0.71883 0.86377 0.83257 0.82298 0.82234 0.84347 0.95618 0.93172 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.80 10.44 71.24 0.74 -1.06 16 2 C 0.06 2.41 7.21 43.07 0.31 2.72 16 3 C -0.31 -13.49 9.58 22.14 0.21 -13.27 16 4 C 0.30 13.37 7.66 131.31 1.01 14.37 16 5 N -0.64 -22.39 5.42 -308.56 -1.67 -24.07 16 6 C 0.52 16.48 7.79 87.66 0.68 17.16 16 7 O -0.53 -20.89 12.70 -3.07 -0.04 -20.93 16 8 C -0.04 -0.88 6.27 29.10 0.18 -0.70 16 9 C -0.02 -0.60 5.87 41.36 0.24 -0.35 16 10 C -0.04 -0.83 12.06 66.97 0.81 -0.02 16 11 O -0.20 -4.62 10.52 -8.38 -0.09 -4.71 16 12 C 0.21 5.73 7.90 87.32 0.69 6.42 16 13 C -0.04 -0.95 5.87 -20.10 -0.12 -1.07 16 14 C -0.09 -1.98 9.69 22.53 0.22 -1.76 16 15 C -0.12 -1.89 10.03 22.23 0.22 -1.67 16 16 C -0.10 -1.09 10.04 22.32 0.22 -0.86 16 17 C -0.12 -1.39 10.03 22.23 0.22 -1.17 16 18 C -0.10 -1.64 9.72 22.52 0.22 -1.42 16 19 N -0.48 -14.51 10.29 -293.19 -3.02 -17.53 16 20 N -0.37 -18.00 3.60 -348.71 -1.26 -19.25 16 21 C 0.27 14.07 6.00 85.64 0.51 14.58 16 22 C -0.55 -30.19 9.39 25.60 0.24 -29.95 16 23 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 24 C 0.03 1.43 5.46 84.66 0.46 1.89 16 25 N -0.91 -49.62 13.29 21.45 0.28 -49.34 16 26 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 30 N -0.33 -16.24 12.56 -47.45 -0.60 -16.84 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.16 6.93 5.83 -2.91 -0.02 6.91 16 35 H 0.42 13.17 7.97 -92.71 -0.74 12.43 16 36 H 0.16 1.89 8.11 -2.39 -0.02 1.87 16 37 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.27 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.12 2.99 7.83 -2.91 -0.02 2.96 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 43 H 0.14 1.96 7.90 -2.91 -0.02 1.94 16 44 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 2.48 7.51 -2.38 -0.02 2.47 16 46 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 Total: -1.00 -80.54 404.46 3.02 -77.51 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.30 Total: 27.57 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 7.08 Total: 3.84 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -6.26 Total: -127.02 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.13 Total: -25.64 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -80.54 3.02 -77.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058332221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.671 kcal (2) G-P(sol) polarization free energy of solvation -80.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds