Wall clock time and date at job start Tue Mar 31 2020 05:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40426 * 122.21174 * 2 1 4 4 C 1.41562 * 128.85335 * 0.02618 * 3 2 1 5 5 C 1.35914 * 120.50074 * 179.97438 * 4 3 2 6 6 C 1.38979 * 120.69124 * 0.02987 * 5 4 3 7 7 C 1.37394 * 120.18260 * 359.97438 * 6 5 4 8 8 C 1.39891 * 120.18447 * 359.97438 * 7 6 5 9 9 S 1.75995 * 130.58237 * 179.71360 * 8 7 6 10 10 C 1.33680 * 122.21394 * 180.02562 * 2 1 3 11 11 C 1.47004 * 124.66154 * 359.93587 * 10 2 1 12 12 O 1.21652 * 119.99611 * 351.22323 * 11 10 2 13 13 N 1.34769 * 120.00361 * 171.21914 * 11 10 2 14 14 C 1.46507 * 120.00109 * 1.99023 * 13 11 10 15 15 C 1.50697 * 109.46709 * 82.01723 * 14 13 11 16 16 H 1.07995 * 120.00462 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99598 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00052 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47378 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47380 * 120.00130 * 19 17 15 22 22 H 1.48509 * 109.47051 * 239.99843 * 19 17 15 23 23 C 1.46500 * 120.00345 * 181.98983 * 13 11 10 24 24 C 1.50695 * 109.47407 * 89.99776 * 23 13 11 25 25 C 1.38673 * 120.42041 * 269.72672 * 24 23 13 26 26 C 1.38634 * 118.42188 * 179.77900 * 25 24 23 27 27 C 1.38228 * 119.15536 * 0.51669 * 26 25 24 28 28 N 1.31849 * 120.76719 * 359.72071 * 27 26 25 29 29 C 1.31888 * 121.72814 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47681 * 89.99523 * 1 2 3 31 31 H 1.09000 * 109.47095 * 209.99686 * 1 2 3 32 32 H 1.08996 * 109.47090 * 329.99542 * 1 2 3 33 33 H 1.08004 * 119.74742 * 359.97438 * 4 3 2 34 34 H 1.07996 * 119.66067 * 180.02562 * 5 4 3 35 35 H 1.08000 * 119.90630 * 180.02562 * 6 5 4 36 36 H 1.08002 * 119.90509 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.46921 * 202.02186 * 14 13 11 38 38 H 1.08995 * 109.46435 * 322.02060 * 14 13 11 39 39 H 0.97005 * 119.99778 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47607 * 210.00619 * 23 13 11 41 41 H 1.09008 * 109.46713 * 330.00142 * 23 13 11 42 42 H 1.07996 * 120.79080 * 0.02562 * 25 24 23 43 43 H 1.07999 * 120.42028 * 180.22173 * 26 25 24 44 44 H 1.07997 * 119.61426 * 179.74792 * 27 26 25 45 45 H 1.08002 * 119.61933 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2555 1.1881 0.0000 4 6 1.7961 2.5271 0.0005 5 6 2.6800 3.5596 0.0009 6 6 4.0492 3.3213 0.0003 7 6 4.5261 2.0328 -0.0003 8 6 3.6361 0.9535 0.0003 9 16 3.9391 -0.7802 -0.0069 10 6 2.2196 -1.1310 -0.0005 11 6 1.6422 -2.4829 0.0002 12 8 0.4460 -2.6333 0.1622 13 7 2.4381 -3.5557 -0.1785 14 6 3.8844 -3.3777 -0.3300 15 6 4.5181 -3.2351 1.0298 16 1 3.9049 -3.2735 1.9180 17 6 5.8807 -3.0554 1.1400 18 7 6.6274 -3.0090 0.0584 19 14 6.6662 -2.8792 2.8256 20 1 5.6167 -2.9663 3.8724 21 1 7.6574 -3.9667 3.0259 22 1 7.3492 -1.5637 2.9183 23 6 1.8572 -4.8999 -0.2214 24 6 1.4964 -5.2462 -1.6429 25 6 0.2371 -4.9471 -2.1405 26 6 -0.0489 -5.2799 -3.4556 27 6 0.9202 -5.9042 -4.2183 28 7 2.1057 -6.1780 -3.7102 29 6 2.4143 -5.8714 -2.4652 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 0.7353 2.7297 0.0005 34 1 2.3146 4.5759 0.0017 35 1 4.7402 4.1513 0.0010 36 1 5.5910 1.8528 -0.0004 37 1 4.3059 -4.2450 -0.8382 38 1 4.0804 -2.4812 -0.9181 39 1 7.5861 -2.8829 0.1359 40 1 2.5821 -5.6214 0.1557 41 1 0.9607 -4.9281 0.3982 42 1 -0.5019 -4.4627 -1.5197 43 1 -1.0182 -5.0585 -3.8773 44 1 0.7040 -6.1705 -5.2424 45 1 3.3960 -6.1111 -2.0841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058368072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:05 Heat of formation + Delta-G solvation = 49.215459 kcal Electronic energy + Delta-G solvation = -30402.623941 eV Core-core repulsion = 26476.427667 eV Total energy + Delta-G solvation = -3926.196274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.17719 -39.50062 -38.79211 -35.79591 -34.91734 -33.34630 -32.27195 -31.46265 -30.73690 -29.45725 -28.12841 -27.74749 -25.89442 -23.68760 -23.38513 -22.93213 -22.41210 -21.69969 -19.84296 -18.20195 -17.69842 -17.06565 -16.73691 -16.47870 -16.00043 -15.74595 -15.24937 -14.81492 -14.69688 -14.59216 -14.35629 -13.91342 -13.63444 -13.46474 -13.42205 -12.99573 -12.90915 -12.75918 -12.70656 -12.50297 -12.28848 -12.01547 -11.90194 -11.78011 -11.36154 -11.17698 -11.13824 -10.89701 -10.70865 -10.46818 -10.36702 -10.02952 -9.65868 -9.31476 -9.23981 -9.22280 -9.12563 -8.83599 -8.74078 -8.12199 -7.91824 -6.92517 -6.42917 -4.43987 0.88486 1.23508 1.46795 1.70158 2.38107 2.44984 2.82063 3.11489 3.20742 3.24598 3.62940 3.70447 4.10318 4.15180 4.17124 4.61126 4.91889 4.94734 5.04091 5.07599 5.15315 5.20869 5.22240 5.25921 5.41578 5.55085 5.58322 5.75522 5.79176 5.83488 5.96160 6.02407 6.06005 6.09356 6.13411 6.29427 6.32239 6.34992 6.44414 6.52131 6.61679 6.76105 6.81535 6.87032 6.92412 6.96061 7.20860 7.27482 7.51884 7.66621 7.99527 8.13064 8.51935 8.73996 9.14262 10.61107 Molecular weight = 366.11amu Principal moments of inertia in cm(-1) A = 0.007935 B = 0.004518 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.861866 B = 6195.443740 C = 8559.826234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.041 4.041 3 C -0.087 4.087 4 C -0.077 4.077 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.081 4.081 8 C -0.219 4.219 9 S 0.320 5.680 10 C -0.246 4.246 11 C 0.592 3.408 12 O -0.555 6.555 13 N -0.589 5.589 14 C 0.224 3.776 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.078 3.922 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.163 3.837 24 C -0.148 4.148 25 C -0.055 4.055 26 C -0.181 4.181 27 C 0.091 3.909 28 N -0.489 5.489 29 C 0.115 3.885 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.271 0.729 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.150 0.850 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 3.432 -3.214 9.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.057 4.057 3 C -0.096 4.096 4 C -0.097 4.097 5 C -0.159 4.159 6 C -0.137 4.137 7 C -0.103 4.103 8 C -0.334 4.334 9 S 0.601 5.399 10 C -0.365 4.365 11 C 0.381 3.619 12 O -0.437 6.437 13 N -0.318 5.318 14 C 0.101 3.899 15 C -0.579 4.579 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.203 1.203 23 C 0.040 3.960 24 C -0.151 4.151 25 C -0.081 4.081 26 C -0.200 4.200 27 C -0.066 4.066 28 N -0.197 5.197 29 C -0.043 4.043 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.168 0.832 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.228 1.996 -3.749 7.538 hybrid contribution -1.128 1.586 1.341 2.363 sum -7.356 3.582 -2.408 8.529 Atomic orbital electron populations 1.20806 0.89958 1.03676 1.02130 1.18693 0.96982 0.90028 1.00008 1.17992 0.91944 0.93393 1.06293 1.20716 0.99172 0.90928 0.98835 1.20472 0.93411 0.98393 1.03624 1.20969 0.95475 0.96183 1.01092 1.20461 0.98447 0.91079 1.00323 1.25113 0.96972 1.06333 1.05024 1.87396 0.97545 0.86884 1.68085 1.23682 1.00250 0.96716 1.15875 1.17095 0.85502 0.83225 0.76039 1.90591 1.14783 1.85886 1.52459 1.48073 1.09646 1.04572 1.69529 1.19776 0.73773 0.98173 0.98168 1.21498 0.92879 1.51087 0.92449 0.91094 1.24894 0.96764 0.93920 0.97315 1.69919 1.06455 1.46666 1.27913 0.86502 0.79626 0.78274 0.83817 1.19218 1.20466 1.20315 1.20170 1.00157 0.84570 0.91147 1.21405 0.94920 0.99821 0.99003 1.21669 0.96461 0.94803 0.95192 1.22117 1.01124 1.01510 0.95295 1.22709 0.89012 0.95104 0.99773 1.67703 1.19772 1.18539 1.13705 1.22795 0.99063 0.93574 0.88826 0.91913 0.88267 0.92719 0.86550 0.86535 0.86277 0.86223 0.92815 0.93628 0.91946 0.88819 0.89301 0.84384 0.85186 0.83234 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.35 36.00 0.34 -1.41 16 2 C -0.04 -0.77 5.86 -105.40 -0.62 -1.39 16 3 C -0.09 -1.59 5.85 -107.13 -0.63 -2.22 16 4 C -0.08 -1.17 9.62 -39.15 -0.38 -1.55 16 5 C -0.14 -1.90 9.94 -40.14 -0.40 -2.30 16 6 C -0.11 -1.63 10.03 -39.61 -0.40 -2.03 16 7 C -0.08 -1.36 10.07 -39.27 -0.40 -1.76 16 8 C -0.22 -4.19 6.50 -38.29 -0.25 -4.43 16 9 S 0.32 6.68 15.81 -107.50 -1.70 4.98 16 10 C -0.25 -5.05 6.12 -37.63 -0.23 -5.28 16 11 C 0.59 12.18 7.53 -12.71 -0.10 12.09 16 12 O -0.55 -11.40 13.21 5.23 0.07 -11.34 16 13 N -0.59 -11.58 2.47 -177.86 -0.44 -12.02 16 14 C 0.22 4.85 4.75 -5.19 -0.02 4.82 16 15 C -0.54 -12.50 6.86 -34.44 -0.24 -12.73 16 16 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.08 1.84 4.96 -17.82 -0.09 1.75 16 18 N -0.87 -21.40 13.29 55.43 0.74 -20.67 16 19 Si 0.89 19.11 29.54 -169.99 -5.02 14.09 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C 0.16 2.70 5.54 -5.20 -0.03 2.67 16 24 C -0.15 -2.32 5.48 -104.48 -0.57 -2.89 16 25 C -0.05 -0.80 9.86 -39.27 -0.39 -1.19 16 26 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 27 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 28 N -0.49 -7.71 10.36 -13.25 -0.14 -7.85 16 29 C 0.11 1.81 10.86 -17.55 -0.19 1.62 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.76 5.55 -51.93 -0.29 1.47 16 32 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 33 H 0.12 1.50 7.42 -52.48 -0.39 1.11 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.05 1.19 8.01 -51.93 -0.42 0.78 16 38 H 0.05 1.07 4.52 -22.09 -0.10 0.97 16 39 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 40 H 0.09 1.45 8.02 -51.93 -0.42 1.03 16 41 H 0.09 1.43 7.35 -51.92 -0.38 1.05 16 42 H 0.14 2.01 7.80 -52.49 -0.41 1.60 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.16 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -26.97 385.08 -11.15 -38.12 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.29 Total: 6.78 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -5.17 Total: -17.91 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.16 Total: -40.53 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.70 Total: 4.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -26.97 -11.15 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058368072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.333 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds