Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39867 * 125.89894 * 2 1 4 4 C 1.35314 * 107.91716 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.12724 * 180.26523 * 4 3 2 6 6 N 1.34946 * 107.74993 * 0.02562 * 4 3 2 7 7 C 1.46503 * 126.04031 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47483 * 89.99334 * 7 6 4 9 9 C 1.38388 * 119.92702 * 89.99581 * 8 7 6 10 10 C 1.38332 * 120.29443 * 179.97438 * 9 8 7 11 11 C 1.37982 * 120.14353 * 0.02562 * 10 9 8 12 12 C 1.39560 * 119.85356 * 0.02562 * 11 10 9 13 13 C 1.47842 * 120.14086 * 180.02562 * 12 11 10 14 14 O 1.21554 * 119.99309 * 129.52390 * 13 12 11 15 15 N 1.34769 * 120.00736 * 309.52019 * 13 12 11 16 16 C 1.46503 * 119.99646 * 3.45283 * 15 13 12 17 17 C 1.50696 * 109.47178 * 93.89105 * 16 15 13 18 18 H 1.08005 * 120.00395 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47255 * 59.99897 * 21 19 17 23 23 H 1.48504 * 109.47597 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47358 * 299.99801 * 21 19 17 25 25 C 1.46499 * 120.00400 * 183.45086 * 15 13 12 26 26 C 1.52997 * 109.46981 * 84.85942 * 25 15 13 27 27 C 1.47207 * 109.47093 * 180.02562 * 26 25 15 28 28 N 9.45690 * 131.77185 * 251.50216 * 4 1 2 29 29 C 1.37936 * 119.92829 * 269.72634 * 8 7 6 30 30 N 1.30835 * 125.89339 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.46742 * 269.97249 * 1 2 3 32 32 H 1.09002 * 109.46819 * 29.97045 * 1 2 3 33 33 H 1.09001 * 109.47532 * 149.97001 * 1 2 3 34 34 H 1.08001 * 126.04246 * 0.02562 * 3 2 1 35 35 H 1.08994 * 109.47234 * 269.69852 * 5 4 3 36 36 H 1.09000 * 109.46536 * 29.69445 * 5 4 3 37 37 H 1.08999 * 109.46847 * 149.69150 * 5 4 3 38 38 H 1.09000 * 109.46804 * 209.99479 * 7 6 4 39 39 H 1.08995 * 109.46651 * 329.99436 * 7 6 4 40 40 H 1.07998 * 119.85036 * 359.97438 * 9 8 7 41 41 H 1.08001 * 119.93180 * 180.02562 * 10 9 8 42 42 H 1.08007 * 120.07233 * 180.02562 * 11 10 9 43 43 H 1.09007 * 109.46866 * 213.88520 * 16 15 13 44 44 H 1.08993 * 109.47288 * 333.88834 * 16 15 13 45 45 H 0.97004 * 120.00281 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.47213 * 204.85961 * 25 15 13 47 47 H 1.09003 * 109.47034 * 324.85744 * 25 15 13 48 48 H 1.08995 * 109.47421 * 300.00087 * 26 25 15 49 49 H 1.09000 * 109.47338 * 60.00800 * 26 25 15 50 50 H 1.07994 * 120.07167 * 359.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8351 1.5988 0.0064 6 7 3.6088 -0.6342 0.0004 7 6 4.7899 -1.5009 0.0013 8 6 5.1937 -1.7983 1.4224 9 6 4.6691 -2.9014 2.0728 10 6 5.0349 -3.1818 3.3771 11 6 5.9260 -2.3616 4.0383 12 6 6.4580 -1.2469 3.3886 13 6 7.4136 -0.3642 4.0909 14 8 8.4676 -0.0676 3.5630 15 7 7.1164 0.1115 5.3163 16 6 5.8812 -0.3060 5.9843 17 6 6.1676 -1.4841 6.8792 18 1 7.1695 -1.8824 6.9437 19 6 5.1507 -2.0537 7.6158 20 7 3.9309 -1.5685 7.5378 21 14 5.5056 -3.5145 8.7246 22 1 6.5143 -3.1287 9.7440 23 1 4.2538 -3.9369 9.4028 24 1 6.0310 -4.6389 7.9091 25 6 8.0283 1.0461 5.9803 26 6 7.7283 2.4713 5.5116 27 6 8.6451 3.4104 6.1784 28 7 9.3598 4.1280 6.6919 29 6 6.0897 -0.9735 2.0702 30 7 2.2741 -1.0599 -0.0005 31 1 -0.3632 -0.0005 1.0276 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 1.9924 2.1598 0.0004 35 1 5.1345 1.8116 -1.0198 36 1 4.6051 2.5328 0.5190 37 1 5.6486 1.0908 0.5244 38 1 4.5567 -2.4333 -0.5128 39 1 5.6097 -0.9983 -0.5117 40 1 3.9709 -3.5462 1.5598 41 1 4.6222 -4.0444 3.8789 42 1 6.2111 -2.5819 5.0566 43 1 5.4949 0.5192 6.5826 44 1 5.1414 -0.5897 5.2359 45 1 3.2153 -1.9694 8.0557 46 1 7.8914 0.9823 7.0599 47 1 9.0576 0.7900 5.7289 48 1 7.8652 2.5352 4.4322 49 1 6.6991 2.7275 5.7632 50 1 6.5020 -0.1156 1.5599 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058380755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = 87.504358 kcal Electronic energy + Delta-G solvation = -32854.990708 eV Core-core repulsion = 28655.827739 eV Total energy + Delta-G solvation = -4199.162968 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25315 -39.92821 -38.24585 -36.67568 -35.35369 -34.50546 -33.08038 -32.40676 -31.55871 -31.02967 -30.35177 -28.52522 -27.38238 -27.01411 -25.22391 -24.74633 -23.32630 -22.25240 -21.57354 -20.32646 -19.33118 -18.69249 -17.52153 -16.93366 -16.71549 -16.43313 -16.14602 -15.59119 -15.33463 -15.11882 -14.72187 -14.62737 -14.20240 -14.00985 -13.86319 -13.72132 -13.46050 -13.40593 -13.15503 -12.96140 -12.94001 -12.59874 -12.49133 -12.38138 -12.30987 -12.18230 -12.10942 -12.06486 -11.81597 -11.68719 -11.55511 -11.29110 -11.07292 -10.91301 -10.71565 -10.68235 -10.42915 -10.27740 -9.95821 -9.38522 -8.97461 -8.74608 -8.62224 -8.45841 -8.34827 -8.02015 -6.34047 -4.42484 1.35136 1.53761 1.96045 2.67227 2.79431 2.84605 2.91006 3.13883 3.20224 3.21198 3.26464 3.57842 4.13471 4.20115 4.30461 4.45895 4.62591 4.74566 4.91719 4.93988 4.97821 5.05001 5.18958 5.26734 5.28416 5.30568 5.33882 5.39669 5.47947 5.59800 5.61232 5.65426 5.70495 5.81027 5.86494 5.89980 5.90871 5.98464 6.18516 6.19932 6.25348 6.28029 6.51453 6.63297 6.77005 6.85442 6.90353 7.04706 7.09723 7.27063 7.31694 7.58489 7.66601 7.84440 7.86814 8.06316 8.58669 8.74753 9.24318 10.71690 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.007037 B = 0.003479 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3977.887130 B = 8046.948922 C =10095.066874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.069 3.931 3 C -0.277 4.277 4 C 0.090 3.910 5 C -0.099 4.099 6 N -0.361 5.361 7 C 0.180 3.820 8 C -0.142 4.142 9 C -0.075 4.075 10 C -0.130 4.130 11 C -0.051 4.051 12 C -0.124 4.124 13 C 0.562 3.438 14 O -0.564 6.564 15 N -0.588 5.588 16 C 0.231 3.769 17 C -0.549 4.549 18 H 0.064 0.936 19 C 0.072 3.928 20 N -0.879 5.879 21 Si 0.892 3.108 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.127 3.873 26 C -0.046 4.046 27 C 0.221 3.779 28 N -0.449 5.449 29 C -0.060 4.060 30 N -0.294 5.294 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.170 0.830 43 H 0.038 0.962 44 H 0.048 0.952 45 H 0.268 0.732 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 2.068 -14.410 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 C -0.306 4.306 4 C -0.037 4.037 5 C -0.157 4.157 6 N -0.143 5.143 7 C 0.059 3.941 8 C -0.143 4.143 9 C -0.094 4.094 10 C -0.148 4.148 11 C -0.069 4.069 12 C -0.127 4.127 13 C 0.350 3.650 14 O -0.445 6.445 15 N -0.317 5.317 16 C 0.111 3.889 17 C -0.587 4.587 18 H 0.083 0.917 19 C -0.133 4.133 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.198 1.198 25 C 0.001 3.999 26 C -0.087 4.087 27 C -0.097 4.097 28 N -0.126 5.126 29 C -0.079 4.079 30 N -0.116 5.116 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.187 0.813 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.127 0.873 49 H 0.130 0.870 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.947 1.922 -13.834 14.102 hybrid contribution -0.396 -0.247 0.706 0.846 sum -2.344 1.675 -13.128 13.440 Atomic orbital electron populations 1.20142 0.87018 1.02818 1.02930 1.22251 0.96771 0.90911 0.99785 1.21057 0.91038 0.99589 1.18943 1.21062 0.97219 0.84758 1.00652 1.20568 0.93460 0.98546 1.03095 1.48623 1.05044 1.03857 1.56769 1.20469 0.84005 0.95181 0.94447 1.19641 1.00814 0.97844 0.96027 1.21127 0.97336 0.95993 0.94945 1.21143 0.98791 1.00618 0.94243 1.22492 0.91746 0.91302 1.01375 1.19784 1.00361 0.98063 0.94454 1.18348 0.85754 0.79613 0.81271 1.90706 1.25154 1.61053 1.67539 1.48146 1.24323 1.43077 1.16159 1.19671 0.80166 0.95925 0.93119 1.21380 0.95766 1.15107 1.26425 0.91741 1.24922 0.94809 0.97263 0.96287 1.69905 1.00465 1.40770 1.40404 0.86648 0.77890 0.82607 0.81001 1.19965 1.21019 1.19832 1.21128 0.95040 0.85267 0.98417 1.19770 0.96648 0.91665 1.00626 1.29062 0.93677 0.93723 0.93221 1.81164 1.10513 1.10962 1.09980 1.20895 0.95809 0.98126 0.93103 1.77286 0.86311 1.22650 1.25372 0.90568 0.90743 0.91218 0.83958 0.90344 0.89551 0.90758 0.88106 0.88383 0.86234 0.85673 0.81330 0.94402 0.93381 0.92173 0.88902 0.90075 0.87343 0.87036 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.45 36.01 0.38 -0.31 16 2 C 0.07 0.92 7.22 -82.40 -0.59 0.33 16 3 C -0.28 -3.48 10.65 -40.01 -0.43 -3.91 16 4 C 0.09 1.12 6.93 -82.26 -0.57 0.55 16 5 C -0.10 -0.90 9.90 36.01 0.36 -0.55 16 6 N -0.36 -4.87 3.60 -58.31 -0.21 -5.08 16 7 C 0.18 2.05 6.19 -5.19 -0.03 2.02 16 8 C -0.14 -1.97 5.46 -104.68 -0.57 -2.54 16 9 C -0.08 -1.10 9.69 -39.49 -0.38 -1.48 16 10 C -0.13 -2.11 10.03 -39.64 -0.40 -2.51 16 11 C -0.05 -0.93 7.65 -39.18 -0.30 -1.23 16 12 C -0.12 -2.19 4.82 -104.97 -0.51 -2.69 16 13 C 0.56 10.44 7.19 -12.33 -0.09 10.35 16 14 O -0.56 -11.25 16.68 5.32 0.09 -11.16 16 15 N -0.59 -10.59 2.47 -176.18 -0.43 -11.03 16 16 C 0.23 4.79 4.65 -5.19 -0.02 4.77 16 17 C -0.55 -12.52 6.64 -34.44 -0.23 -12.75 16 18 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.88 -22.22 13.29 55.43 0.74 -21.48 16 21 Si 0.89 18.88 29.54 -169.99 -5.02 13.86 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C 0.13 1.94 5.36 -4.04 -0.02 1.92 16 26 C -0.05 -0.57 5.99 -29.52 -0.18 -0.75 16 27 C 0.22 3.08 15.43 -20.77 -0.32 2.76 16 28 N -0.45 -7.31 18.53 42.14 0.78 -6.53 16 29 C -0.06 -0.91 9.15 -39.19 -0.36 -1.27 16 30 N -0.29 -4.43 12.58 33.67 0.42 -4.00 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.70 5.33 -51.93 -0.28 0.43 16 38 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.10 0.88 7.61 -51.93 -0.39 0.49 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.17 3.43 4.84 -52.48 -0.25 3.18 16 43 H 0.04 0.82 8.10 -51.92 -0.42 0.40 16 44 H 0.05 1.08 5.74 -51.93 -0.30 0.78 16 45 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 46 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 47 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 48 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.12 1.63 5.97 -52.49 -0.31 1.32 16 LS Contribution 425.35 15.07 6.41 6.41 Total: -1.00 -29.76 425.35 -8.55 -38.31 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.96 Total: 6.35 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -4.36 Total: -5.65 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 1.30 Total: -48.12 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -29.76 -8.55 -38.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058380755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.814 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds